NO17G01300, NO17G01300 (gene) Nannochloropsis oceanica

Overview
NameNO17G01300
Unique NameNO17G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3123
Alignment locationchr17:402390..405512 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna polymerase i
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:402390..405512 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00171085'-flap endonuclease activity
GO:0003887DNA-directed DNA polymerase activity
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0016740transferase activity
GO:0004518nuclease activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0033567DNA replication, Okazaki fragment processing
GO:0006260DNA replication
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0362795-3_exonuclease_C_sf
IPR029060PIN_domain-like
IPR038969FEN_bact-like
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR0200455-3_exonuclease_C
IPR0200465-3_exonucl_a-hlix_arch_N
IPR008918HhH2
IPR0024215-3_exonuclease_N
Homology
BLAST of NO17G01300 vs. NCBI_GenBank
Match: EWM24231.1 (dna polymerase i [Nannochloropsis gaditana])

HSP 1 Score: 859.8 bits (2220), Expect = 6.300e-246
Identity = 526/729 (72.15%), Postives = 584/729 (80.11%), Query Frame = 0
Query:    1 MRTCALLSAALLATA----QQMGGL-AFVFRPTNRCSIRVIRQLGGRQSLERSKSVSFPAPLCAISTACGSSSITAGSSSDGRGXXXXXXXRLGGGSSKMPFMRPLNSVVEGRGERIKMARGDDDRDSGAASAAPVVV-----DAVQNSGIVPATATVDS-------ILRPXXXXXXXXXXXXXXGVVGAGGEGAPDLSAELARLEELGQDIFKMAGREFKITSYVELSRVLFEDLSLPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLDYRALLYLIRSKQGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMSPEEKLMMSMLKEESGIDALDRTMVRVGVDISKVMERVQTMTNGGGLRTPGGASTEEKDETFIPEEGGFEEPDLAEPIPMLMGTGEED---LEGEKPMSLYDKGWGVANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASRVTSTLAKAE 710
            MRT +L  A +L  A    QQM GL AFVF   N+C     RQ+    +   ++S   P     +    G+SS+                      S  + F++PL SVVEGRGER+K  RGD++R  G  SAAPVVV        + SG+   +   +S           XXXXXXXXXXXXXX      GE +PDLSAELARLEEL   IF+MAGREFKITSYVELSRVLFEDL LPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLDYRALLYLIRSKQG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RMSPEEKLMMSMLKE+SG+DALDRTMVRVGVDI KVMERVQTM+ GGGLRT GGA TE K+E+F+PEEGGFEE DLA PIPMLM   EE+   LEG  P+SLYDKGWG ANN VL+DAASI+YRT+HAMP+LTGPDGTP+NAVLGFCNVLNKLLLPA+ +SR+RPYVLVVFDGH P +RQTALYP+YKANRA TPE+L++QFPLAQEAA+AFGAINVTAP+GLEADDVIATFAQVA+EQV D+KVTIVSSDKDFLQLVG+D++VFDPFNM RLGPNEVFEKYGLE  QLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFL+SRRLIRLKKLFEPPSMT+MP+ARFSE ++  FC ++GFKTLA RV STLA+ E
Sbjct:    1 MRTISLWYAGVLGIAGWSPQQMSGLAAFVFSSANQCWRTAARQVTHGATFAPARSSRQPISFQGLP---GASSLR---------------------SRSVLFVKPLYSVVEGRGERLKTGRGDEER-GGGMSAAPVVVGVPSPGTAKESGVSKESEVANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGE-SPDLSAELARLEELAGTIFQMAGREFKITSYVELSRVLFEDLKLPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLDYRALLYLIRSKQG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMSPEEKLMMSMLKEDSGVDALDRTMVRVGVDIEKVMERVQTMSTGGGLRTAGGA-TEFKEESFVPEEGGFEETDLAAPIPMLMQAEEEEAENLEGGSPVSLYDKGWGAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSEQRLTDFCTRFGFKTLALRVKSTLARVE 698          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: OIN85711.1 (DNA polymerase I [Alphaproteobacteria bacterium CG1_02_46_17])

HSP 1 Score: 219.5 bits (558), Expect = 3.300e-53
Identity = 122/286 (42.66%), Postives = 184/286 (64.34%), Query Frame = 0
Query:  418 VLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKK--LFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASRV 702
            +L+D +  I+R +HA+P LT PDGTP+ AV+GFCN+++KLL      +    ++ ++FD    ++ +  +Y  YKA+R   PEDLI QFPL +EA+ AFG +     +G EADD+IAT+A++A +   D  VTIVSSDKD +QLV D V++ DP    ++G  +V EK+G+   Q++D  ++ GD+ DNVPG+PGIG KTA +L+ ++ S E L E   E++ P+ R+ +E+N E   +S++L+ LK       P   L+P   FSE K++ F    GFKTL SR+
Sbjct:   10 LLVDGSGFIFRAYHALPPLTRPDGTPVGAVMGFCNMIHKLL-----TTHADAHIAIIFDA-ARINFRNDIYAAYKAHRPPAPEDLIPQFPLIREASEAFG-LPTLEMEGYEADDLIATYARLAHDNGVD--VTIVSSDKDLMQLVRDGVAMIDPMKQIKIGREQVIEKFGVPPEQVVDVQSLCGDSVDNVPGVPGIGIKTAAQLIIDYGSLENLLEKAGEIKQPKRREALENNAELARISKQLVTLKNDVPVTVPVEDLVPTEPFSE-KLRDFLEYQGFKTLVSRI 285          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: OFW88166.1 (DNA polymerase I [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_46_13])

HSP 1 Score: 216.5 bits (550), Expect = 2.800e-52
Identity = 118/290 (40.69%), Postives = 179/290 (61.72%), Query Frame = 0
Query:  413 VANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASRVT 703
            ++    L+D +  I+R +HA+P LT PDGTP+ AV+GFCN+L+KLL      +    ++ V+FD      R   +Y  YKA+R   PEDL+ QFPL +EAA+AFG + +   +G EADD+IAT+A++A  +    KVTIVSSDKD +QLV  D+ + DP     +G  EVFEK+G+   +++D  A+ GD +DNVPG+PGIG KTA EL+  + S E L +   +++ P+ R+ +E N E   +S++L+ L     P  + +      ++  + AF    GFK+L SR++
Sbjct:    1 MSKELFLVDGSGFIFRAYHALPPLTRPDGTPVGAVMGFCNMLSKLL-----STHRDAHIAVIFDAARKNFRND-IYADYKAHRPPAPEDLVPQFPLMREAAVAFG-LPIMEMEGYEADDIIATYAKLA--EAEGTKVTIVSSDKDLMQLVRGDIKLMDPMKQIMIGAAEVFEKFGVTPDKVIDVQALCGDVSDNVPGVPGIGVKTAAELINTYGSLENLLDNTAQIKQPKRRETLETNAELARISKKLVTLCDTV-PVPLPVQQLVAGNQDNLAAFLEFQGFKSLLSRLS 280          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: OFW97485.1 (DNA polymerase I, partial [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9])

HSP 1 Score: 216.5 bits (550), Expect = 2.800e-52
Identity = 118/290 (40.69%), Postives = 179/290 (61.72%), Query Frame = 0
Query:  413 VANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASRVT 703
            ++    L+D +  I+R +HA+P LT PDGTP+ AV+GFCN+L+KLL      +    ++ V+FD      R   +Y  YKA+R   PEDL+ QFPL +EAA+AFG + +   +G EADD+IAT+A++A  +    KVTIVSSDKD +QLV  D+ + DP     +G  EVFEK+G+   +++D  A+ GD +DNVPG+PGIG KTA EL+  + S E L +   +++ P+ R+ +E N E   +S++L+ L     P  + +      ++  + AF    GFK+L SR++
Sbjct:    1 MSKELFLVDGSGFIFRAYHALPPLTRPDGTPVGAVMGFCNMLSKLL-----STHRDAHIAVIFDAARKNFRND-IYADYKAHRPPAPEDLVPQFPLMREAAVAFG-LPIMEMEGYEADDIIATYAKLA--EAEGTKVTIVSSDKDLMQLVRGDIKLMDPMKQIMIGAAEVFEKFGVTPDKVIDVQALCGDVSDNVPGVPGIGVKTAAELINTYGSLENLLDNTAQIKQPKRRETLETNAELARISKKLVTLCDTV-PVPLPVQQLVAGNQDNLAAFLEFQGFKSLLSRLS 280          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: WP_021132678.1 (DNA polymerase I [Phaeospirillum fulvum] >EPY01248.1 DNA polymerase I [Phaeospirillum fulvum MGU-K5])

HSP 1 Score: 213.0 bits (541), Expect = 3.100e-51
Identity = 127/300 (42.33%), Postives = 179/300 (59.67%), Query Frame = 0
Query:  404 MSLYDKGWGVANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFE--PPSMTLMPRARFSEAKMQAFCAKYGFKTLASRV 702
            MS   +      + VLID +  I+R FH +P +T  DGTP+NAV GF  +L KLL           ++ V+FD      R T LYP YKA+R   PE+L+ QFPL +EA  AF    +   +G EADD+IA +A+ A  Q     VTIVSSDKD +QLVGD V++FDP     +GP+EVFEK+G+   +++D  A+ GDAADNVPG+PGIG KTA +L+ E+   E L     E++ P+ R+ + DN     +SR L++L+   +   P   L  RA   E ++ AF A+ GF++L +R+
Sbjct:    1 MSAVTESAASLRHLVLIDGSGFIFRAFHGLPPMTRSDGTPVNAVYGFTTMLLKLL-----NDSAADHIAVIFDSSRKTFR-TDLYPEYKAHRPPPPEELVPQFPLVREAVRAFDVACIEM-EGFEADDLIAAYARAATLQ--GATVTIVSSDKDLMQLVGDRVAMFDPMKNRTIGPDEVFEKFGVGPERVVDVQALCGDAADNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQPKRRQTLIDNAAMARLSRDLVKLRDDMDLPEPVSALAVRALVPE-RLAAFLAEQGFRSLINRL 290          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: PCJ61046.1 (DNA polymerase I [Rhodospirillaceae bacterium])

HSP 1 Score: 212.2 bits (539), Expect = 5.300e-51
Identity = 124/296 (41.89%), Postives = 179/296 (60.47%), Query Frame = 0
Query:  413 VANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFD-GHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFEPPSMTLMPRARFSE-AKMQAFCAKYGFKTLASRVTSTLA 707
            V  +F L+D +  I+R +HA+P LT  DGTP+ AV GF  +L KL     +      ++ +VFD G +       +YP YKANR+ TPEDLI QF L +EA  AFG  +V    G EADD+IAT+A+ A       +VTIVSSDKD +QLV  ++++FD     R+GP EV EK+G+   ++++  A+ GD++DNVPG+PGIG KTA EL+ ++   E L    DE++ P  R+ ++ N E   +S RL++L+     P+     + R  + +K+  F    GFKTLA+RV S LA
Sbjct:    4 VPKHFFLVDGSGFIFRAYHALPPLTRSDGTPVGAVYGFIQMLMKL-----IDDTDADHIAIVFDSGRITFRND--IYPEYKANRSETPEDLIPQFALIREATAAFGLASVEL-QGFEADDLIATYARAAARD--GAEVTIVSSDKDLMQLVDANITMFDAMRNRRIGPKEVKEKFGVAPDRVVEVQALAGDSSDNVPGVPGIGIKTAAELILKYGDVENLLAHADEIKQPVRRERLKANAEMARLSHRLVQLRDDVAVPAPIASFKVRAPDPSKLLEFLRFQGFKTLAARVESRLA 289          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: WP_015468492.1 (DNA polymerase I [Micavibrio aeruginosavorus] >AGH98978.1 DNA polymerase I [Micavibrio aeruginosavorus EPB])

HSP 1 Score: 211.8 bits (538), Expect = 6.900e-51
Identity = 127/307 (41.37%), Postives = 183/307 (59.61%), Query Frame = 0
Query:  415 NNFVLIDAASIIYRTFHAMPK-LTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFEPPSMTLMPRAR-FSEAKMQAFCAKYGFKTLASRV----------TSTLAKAE 710
            N   L+D +  I+R ++A+P+ LT P G P+ AVLGF N++ KLL          P++ V+FD      R   +YP YKANR  TPEDL  QF L +EA  AFG I     +G EADD+IAT+ ++A EQ     VTIVSSDKD +QL+ D V +FDP     +GP++ FEK+G+   +++D  ++ GD +DNVPG+PGIG KTA +L+ E+ S +EL     +++ P+ R+ + +N EK  +SRRL++L      P      RAR      + AF A++GFK++ SR+          T T+AK E
Sbjct:   13 NEIFLVDGSGYIFRAYYALPQNLTNPHGVPVGAVLGFVNMMTKLLADMHA-----PFIAVIFDAARQNFRYD-IYPEYKANRDETPEDLKPQFGLIREATKAFG-IPALEMEGFEADDLIATYTRMAREQ--GKTVTIVSSDKDLMQLLTDGVRIFDPMKAKFMGPDDAFEKFGVTPDKVVDVQSLAGDPSDNVPGVPGIGIKTAAQLINEYGSLDELLARASDIKQPKRREALIENAEKARISRRLVQLDDHAPVPVAFEDMRARDLHSPSLAAFLAEHGFKSVLSRLGLKGDVPSASTDTVAKVE 310          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: WP_083386569.1 (DNA polymerase I [Phaeospirillum fulvum] >SEH25693.1 DNA polymerase I [Phaeospirillum fulvum])

HSP 1 Score: 211.8 bits (538), Expect = 6.900e-51
Identity = 125/288 (43.40%), Postives = 177/288 (61.46%), Query Frame = 0
Query:  416 NFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFE--PPSMTLMPRARFSEAKMQAFCAKYGFKTLASRV 702
            + VLID +  I+R FH +P ++  DGTP+NAV GF  +L KLL  +        ++ V+FD      R T LYP YKA+R   PE+L+ QFPL +EA  AF    +   +G EADD+IA +A+ A  Q    KVTIVSSDKD +QLVG  VS+FDP     +GP+EVFEK+G+   +++D  A+ GDAADNVPG+PGIG KTA +L+ E+   E L     E++ P+ R+ + DN     +SR L++L+   +   P   L  RA   E ++ AF A+ GF++L +R+
Sbjct:   14 HLVLIDGSGFIFRAFHGLPPMSRSDGTPVNAVYGFTTMLLKLLNDSQAD-----HIAVIFDSSRKTFR-TDLYPEYKAHRPPPPEELVPQFPLVREAVRAFDVACIEM-EGFEADDLIAAYARAATLQ--GAKVTIVSSDKDLMQLVGAQVSMFDPMKNRTIGPDEVFEKFGVGPDRVVDVQALCGDAADNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQPKRRQTLLDNAAMARLSRDLVKLRDDMDLPEPVSALAVRALVPE-RLAAFLAEQGFRSLINRL 291          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: OFW82938.1 (DNA polymerase I [Alphaproteobacteria bacterium GWF2_58_20])

HSP 1 Score: 211.1 bits (536), Expect = 1.200e-50
Identity = 123/287 (42.86%), Postives = 180/287 (62.72%), Query Frame = 0
Query:  416 NFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLK-KLFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASRV 702
            +  LIDA+  I+R FHA+P LT  DGTP+ AV+GF N+L +LLL      R   ++ VVFD      R T LYP YKA+R  TP +LI QF L +E   AF    V A +G EADD++AT+A++  E+   M V+IVSSDKD +QLVGD V++ DP     +GP EV EK+G+   ++ D  A++GDA+DNVPG+PGIGPKTA +L+ EF S + L    D +   + ++ + +NVE   +S++L+ L+    EP  ++ +      +A++ AF    GFK+L +++
Sbjct:    8 HLTLIDASGFIFRAFHALPPLTRADGTPVGAVMGFANMLMRLLL-----ERKPEHLAVVFDVSRKTFR-TELYPEYKAHRPPTPPELIPQFALVRELVAAFSLAAVEA-EGYEADDLLATYARLGHEK--GMDVSIVSSDKDLMQLVGDGVTMLDPIRYRPIGPAEVMEKFGVPPDKVGDLLALMGDASDNVPGVPGIGPKTAAQLITEFGSLDSLLAQLDSLPESKRKQNLIENVELARLSKKLVTLEDHAPEPLPLSALVVPELDKARLAAFFKAQGFKSLLAKL 285          
BLAST of NO17G01300 vs. NCBI_GenBank
Match: WP_012977567.1 (DNA polymerase I [Azospirillum lipoferum] >BAI75754.1 DNA polymerase I (plasmid) [Azospirillum sp. B510])

HSP 1 Score: 210.7 bits (535), Expect = 1.500e-50
Identity = 126/297 (42.42%), Postives = 177/297 (59.60%), Query Frame = 0
Query:  412 GVANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGFCNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPEDLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVTIVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLMSRRLIRLKKLFEPPSMTLMPRARFSE-AKMQAFCAKYGFKTLASRVTSTLAK 708
            G  +   L+D +  I+R FHA+P LT PDGTP+NAVLGF N+L KLL  A  ++     V VVFD    L+ +   YP YKA+R   PE+L  QF L +EA  AF  +     +G EADD+IAT+A++A  Q     VTIVSSDKD +QLV   + +FDP     +GP+EVFEK+G+   +++D  A+ GD+ DNVPG+PGIG KTA +L+ E+   E L    D+++ P  R+ + +  E+  +SRRL+RL     PP      R R  +  K+  F    GF+++ SRV   + K
Sbjct:   23 GDGSGLYLVDGSGFIFRAFHALPMLTRPDGTPVNAVLGFSNMLLKLLADAKAEA-----VAVVFDSK-RLNFRNEFYPDYKAHRPEPPEELKPQFALIREATEAF-CLPCLELEGYEADDLIATYARLA--QEAGRPVTIVSSDKDLMQLVRPGIGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANADKIKQPARRQKLIEFAEQARISRRLVRLDDRAPPPKPLDELRVREPDHRKLIDFLKAQGFRSIVSRVEMEMQK 310          
The following BLAST results are available for this feature:
BLAST of NO17G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24231.16.300e-24672.15dna polymerase i [Nannochloropsis gaditana][more]
OIN85711.13.300e-5342.66DNA polymerase I [Alphaproteobacteria bacterium CG... [more]
OFW88166.12.800e-5240.69DNA polymerase I [Alphaproteobacteria bacterium RI... [more]
OFW97485.12.800e-5240.69DNA polymerase I, partial [Alphaproteobacteria bac... [more]
WP_021132678.13.100e-5142.33DNA polymerase I [Phaeospirillum fulvum] >EPY01248... [more]
PCJ61046.15.300e-5141.89DNA polymerase I [Rhodospirillaceae bacterium][more]
WP_015468492.16.900e-5141.37DNA polymerase I [Micavibrio aeruginosavorus] >AGH... [more]
WP_083386569.16.900e-5143.40DNA polymerase I [Phaeospirillum fulvum] >SEH25693... [more]
OFW82938.11.200e-5042.86DNA polymerase I [Alphaproteobacteria bacterium GW... [more]
WP_012977567.11.500e-5042.42DNA polymerase I [Azospirillum lipoferum] >BAI7575... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002919NSK002919Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01300.1NO17G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558943gene_7761Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g74gene6192Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01300.1NO17G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01300 ID=NO17G01300|Name=NO17G01300|organism=Nannochloropsis oceanica|type=gene|length=3123bp
GACAGGGTATCTAAAACGACCAGGACGCCCATCTACACTCTCATAATCGA
CAACAGTGCCTGGTTGTGTTGAGCGAGAGCAAGCAAGCAGGAGACTCGAA
AGCCAGCAGCAGCAGATAACGCAGCAGCAGAAGCACCATCTTCCACGGCA
AAACAGTAAATGCGCACGTGTGCTCTTTTGTCCGCGGCGCTCTTAGCCAC
AGCGCAGCAAATGGGCGGCCTGGCCTTTGTGTTCAGGCCAACAAACCGAT
GCAGCATAAGAGTAATACGTCAACTTGGGgtgagttaccatgtcctctag
tcccacccatcttccaccacttcacggtatacgtctaaaaggccagtctg
atcacccttgtcctatttcattattatcccaccatttcacagGGCCGGCA
GTCGCTCGAACGGTCAAAATCAGTATCCTTCCCAGCGCCGCTTTGCGCCA
TATCCACGGCCTGTGGCAGCAGCAGCATCACCGCAGGCAGCAGCAGCGAC
GGTAGAGGAGGTCGCAGCAGTAGGAGTAGCCGTTTGGGTGGCGGCAGCAG
TAAGATGCCCTTCATGAGACCGCTGAACTCGGTGGTAGAAGGGCGAGGGG
AGCGGATCAAGATGGCGCGAGGCGACGATGACAGAGACAGTGGAGCTGCT
TCAGCAGCCCCCGTCGTGGTGGATGCAGTTCAGAATTCTGGTATAGTGCC
AGCCACAGCCACAGTGGATAGCATCCTTAGACCACCGCCACCACCAGCGC
CAGCAGCAGGGGATAAAGACGAGGACGGTGTGGTGGGCGCGGGAGGTGAG
GGAGCACCTGACTTGTCGGCGGAGCTGGCACGGTTGGAGGAGTTGGGGCA
GGATATATTCAAGATGGCGGGACGGGAGTTTAAGATTACGTCGTATGTTG
AGCTCTCGCGGGTGCTGTTTGAGGATTTGAGTCTTCCTGTGGTGAAGCAG
CCGAGCAATAAGGTTTTGGGTGGGTATTACTCCACCTCGAATGCTGTGCT
CAATGAGCTGTCTGCCATGGGGTACGAGCTCCCAGCCAAGGTACTGGATT
ATCGGGCGCTACTATATTTGATTCGTAGCAAGCAGGGGAAGAAGAAGAAG
AAGAAGACAGCCGGGGAGAGGAAGGACTCTGCGGGGTCCGACAAGGACGT
AGCAGGTGGAGGGGCGGGAGGTGTGGGGGGAGCGAAGGGGGAGCGAATGT
CACCGGAGGAGAAGTTGATGATGAGTATGTTGAAAGAAGAGAGTGGTATC
GATGCCTTGGATAGGACGATGGTGCGAGTGGGTGTAGATATAAGCAAGGT
GATGGAGAGGGTGCAGACGATGACTAATGGCGGGGGGCTACGGACTCCGG
GAGGAGCGAGCACGGAGGAGAAGGACGAGACTTTCATCCCGGAAGAAGGA
GGATTTGAAGAGCCTGATTTGGCGGAGCCAATCCCAATGTTGATGGGGAC
AGGGGAAGAGGATCTGGAGGGGGAGAAACCGATGTCATTGTATGACAAGG
GGTGGGGAGTCGCGAATAATTTTGTGCTGATTGATGCCGCGAGCATCATT
TATAGGACTTTTCACGCAATGCCTAAGCTGACGGGGCCTGATGGAACGCC
GATCAATGCTGTCCTTGGGTTTTGTAATGTCTTGAACAAGCTCTTACTCC
CCGCCATGGTCCAGAGTCGCATCCGGCCCTATGTGCTCGTAGTCTTTGAT
GGCCACGTGCCCCTCCACCGACAAACCGCACTCTACCCCACCTATAAAGC
CAATCGTGCTCGCACCCCGGAAGACCTCATCTCCCAATTTCCTCTAGCCC
AGGAAGCGGCAATTGCGTTTGGCGCCATCAATGTGACGGCGCCGGACGGA
TTGGAAGCTGATGATGTCATTGCCACCTTTGCCCAAGTGGCAATTGAGCA
GGTACCCGATATGAAAGTCACGATTGTGAGTTCAGATAAAGATTTTTTGC
AGCTGGTAGGGGATGATGTGAGTGTCTTCGATCCATTTAACATGGCGAGG
TTGGGTCCGAATGAGGTCTTTGAGAAGTATGGGTTGGAGGCTGGGCAGCT
GCTTGATTATTTCGCGATGGTGGGGGATGCGGCCGACAACGTGCCGGGCA
TCCCTGGGATAGGTCCTAAGACGGCTCAGGAGCTGTTGGAGGAGTTCGAG
AGTTTCGAGGAGCTATGGGAGTTCAAAGATGAGGTGGAATCGCCTAGGTT
GAGGAAAATCGTGGAGGACAATGTGGAGAAGTTTTTGATGTCGCGACGTC
TGATTCGATTGAAGAAATTGTTTGAGCCGCCGAGCATGACGTTGATGCCG
AGAGCAAGGTTTTCGGAGGCGAAGATGCAGGCTTTCTGTGCCAAATACGG
ATTTAAGACGCTGGCGAGCCGGGTTACGAGTACACTGGCCAAGGCCGAGG
CGGCGAAGGAGGCGGCGGCGGAGGAGGGGGGGTCGGGAGGGGGTTCTTTT
CGTAGATATTTATCATAAGAAAACCCGAGAGATTTCACCATTTCACTAAA
CACCAGCCACAGGCACCTATCTCGTGGCTAGTGGCTAGTTCCCTCCCTTC
TCCTTCCCTCGTTTCCTCGTATCCTCCCTTTTCCTTCCCCCCAATGTAGA
GAGCCAGGGAAATTAGAATGACAAACAAAATAGATGAAATATGTCGTAAT
GACTAAGATACACAGTTCCCCAATGGAATAGCTGCACCAGCAATTCAGCA
TGGAGGCAACCACACTGTATAAGTAGAGGAATATGGAAGTTTGAGGGAAA
GAAGAGTACGACAGGGAACGAGACGAGATAGGAAAAGAGGAGAGAGAAAT
AAGGAATAAGAGAGGGAAAAAGGGATGCAAGCTGACCGCTCAATAAATTG
TTTGTGGTTAGATGCTGACTCCAAATAATTTGAGTTCTTTTTAGAAGGAG
GGTGAGGCGTAGGTCTTTGTGAGTAGAGAAAGGCAATGGCAAGGACAAAA
TAGAAGATAGCTAGATTAATATGGCAGAGAGAAAGAAGGGCTTCACATTT
ATGTTATTTTGATGCCGCCGGCCATGCCATGACCAAACGACCCCCACGAC
TGCGACCCCCGAGAAGAAGAAAAGAGAAGGAACCACAGCAATAATAAATA
ATGAAAAAGTGAGAAAACGGAAT
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protein sequence of NO17G01300.1

>NO17G01300.1-protein ID=NO17G01300.1-protein|Name=NO17G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=732bp
MRTCALLSAALLATAQQMGGLAFVFRPTNRCSIRVIRQLGGRQSLERSKS
VSFPAPLCAISTACGSSSITAGSSSDGRGGRSSRSSRLGGGSSKMPFMRP
LNSVVEGRGERIKMARGDDDRDSGAASAAPVVVDAVQNSGIVPATATVDS
ILRPPPPPAPAAGDKDEDGVVGAGGEGAPDLSAELARLEELGQDIFKMAG
REFKITSYVELSRVLFEDLSLPVVKQPSNKVLGGYYSTSNAVLNELSAMG
YELPAKVLDYRALLYLIRSKQGKKKKKKTAGERKDSAGSDKDVAGGGAGG
VGGAKGERMSPEEKLMMSMLKEESGIDALDRTMVRVGVDISKVMERVQTM
TNGGGLRTPGGASTEEKDETFIPEEGGFEEPDLAEPIPMLMGTGEEDLEG
EKPMSLYDKGWGVANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGF
CNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPE
DLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVT
IVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMV
GDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDN
VEKFLMSRRLIRLKKLFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASR
VTSTLAKAEAAKEAAAEEGGSGGGSFRRYLS*
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Synonyms
Publications