NO17G01280, NO17G01280 (gene) Nannochloropsis oceanica

Overview
NameNO17G01280
Unique NameNO17G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4888
Alignment locationchr17:397020..401907 +

Link to JBrowse

Properties
Property NameValue
DescriptionMethylenetetrahydrofolate reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:397020..401907 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006555methionine metabolic process
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004489methylenetetrahydrofolate reductase (NAD(P)H) activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR029041FAD-linked_oxidoreductase-like
IPR003171Mehydrof_redctse
Homology
BLAST of NO17G01280 vs. NCBI_GenBank
Match: EWM24226.1 (methylenetetrahydrofolate reductase [Nannochloropsis gaditana])

HSP 1 Score: 592.0 bits (1525), Expect = 1.300e-165
Identity = 296/395 (74.94%), Postives = 337/395 (85.32%), Query Frame = 0
Query:    1 MTALASGEQETSRNEDERIGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGLGPQSADTPPHRVEKVDEKPIKSLVNGADK-EEKEKDLDG-ELVGAVASS 394
            M+ALA+  +     ED+RIG+LL QR GH TPWFSFEF+PPKTPEGVEKLYERLA+MAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGL+ANMHLTCTNMPTEKV +AL  AK+AGITNILALRGDPP+GQERWEP+EGGF SALDLV YIRK++ TFFSVGVAGYPEGHPNRI QV  LEGLS+AE GRVAVER EDGTVTG+YVC+D DF QEI YLK KV+AGADFVITQMFFD+EVYVAFV+ C +AGI VPI+PGIMC NT+ GF+RMV+FC TRVP++LW +MM+L K D++ VR+YG  FGVRL QELL AG+SGLH+YCLNLSRVALGIV+GLGLG QS D   +  EKV E  I+  +NG+DK + KEK L   + VGAVASS
Sbjct:    1 MSALAT-TKPVEAMEDDRIGELLEQRKGHPTPWFSFEFFPPKTPEGVEKLYERLAEMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLIANMHLTCTNMPTEKVVDALKSAKDAGITNILALRGDPPVGQERWEPIEGGFSSALDLVAYIRKHHDTFFSVGVAGYPEGHPNRIQQVDSLEGLSKAELGRVAVERAEDGTVTGYYVCRDNDFVQEIDYLKAKVDAGADFVITQMFFDAEVYVAFVKTCRSAGITVPILPGIMCFNTLQGFKRMVAFCRTRVPEKLWMDMMALSKSDDDEVRRYGIDFGVRLGQELLRAGSSGLHFYCLNLSRVALGIVSGLGLGSQSVDA-TYTNEKV-ESEIEKAMNGSDKVKSKEKALSNHDHVGAVASS 392          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: CBN79552.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 375.6 bits (963), Expect = 1.900e-100
Identity = 175/313 (55.91%), Postives = 228/313 (72.84%), Query Frame = 0
Query:   35 SFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQV-GGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGL 347
            S EF+PP+T  GV  L +RL +M    PLFVDFTWGAGGSTA+LTL+LT   ++  GL+ NMHLTCTNMP +K+  ALA+ KE GI NI+ALRGDPP G + WE  EGGF  ALDLV YIRKN+G +F + VAGYPEGHPNRI +V GG+E LSEAE+GR  + ++ +G      VC D DF  E+ Y+K+KV+AGADF+ITQMFFD  VY ++++AC   GI VP++PG+MC+N  GGF++M  FC TRVP +L  +M  + K+DE+AV+ +G  +G ++   LL AGA GLH+Y LNL +V +GI+  L L
Sbjct:   30 SLEFFPPRTDTGVMNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTTRTKKEHGLVPNMHLTCTNMPVDKIDHALAQCKEHGIRNIVALRGDPPTGSDTWEAAEGGFTCALDLVKYIRKNHGDYFGISVAGYPEGHPNRIKEVPGGVESLSEAEKGRCKISQDAEGKEV-VTVCSDADFEIEMNYIKEKVDAGADFIITQMFFDPAVYASYIKACRDRGIEVPVVPGLMCINAYGGFKKMTGFCLTRVPPELMAKMEEM-KEDEKAVKAFGVDYGEKMCNALLAAGAPGLHFYTLNLEKVTVGILDRLNL 340          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: GBG26935.1 (Methylenetetrahydrofolate reductase 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 361.7 bits (927), Expect = 2.900e-96
Identity = 175/328 (53.35%), Postives = 236/328 (71.95%), Query Frame = 0
Query:   19 IGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGL 347
            I DL+  +     PW +FE+YPPKT +GV  LY+RL  M    PL+ DFTWGAGGST++LTLEL + A+ RFGL++NMHLTCTNMP EK+  AL ++++AGI NILALRGDPP GQE ++ V+ GF  ALDLV YIR+  G  FS+ VAGYPEGHP RI +V   + LS +E+ R    R +DG+V   +VC D DF +E+ YLKQKV+AGA  ++TQMF+D +V++ FVEAC    I+VP+IPGIMC+ + GG++RM +FC TRV  Q+++E+ ++ KDDE AV ++   FGV   Q+LL +G  GLH+Y LNL +V   ++ GLG+
Sbjct:    7 ISDLVADKGDE--PWIAFEYYPPKTEKGVATLYKRLESMKELGPLYADFTWGAGGSTSDLTLELAVTAQDRFGLVSNMHLTCTNMPREKIDIALEESEKAGIRNILALRGDPPAGQEDFKAVDTGFSCALDLVRYIREKTGDLFSISVAGYPEGHPTRIKKVIAGQSLSPSEQARSV--RMDDGSV---HVCSDVDFHEEMLYLKQKVDAGAQMIVTQMFYDVQVFLDFVEACKRYEINVPVIPGIMCITSYGGYKRMCAFCKTRVTPQMYEELEAI-KDDEAAVSRFAVKFGVETCQKLLDSGVKGLHFYTLNLDKVVTAVLEGLGM 326          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: XP_001746001.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ89425.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 349.4 bits (895), Expect = 1.500e-92
Identity = 170/329 (51.67%), Postives = 228/329 (69.30%), Query Frame = 0
Query:   18 RIGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGL 347
            +I D L + +     + SFEF+PP+T +GV  L  R+ +     PLF+D TWGAGGST++LTL+L     +  G  ANMHLTCTNMP+EK+  AL  A++AGI NI+ALRGDPP G+E WE VEGG+  ALDLV +IRK +G FFS+ V+GYPEGHPN I++V     L+E+ER RV +E E+     G YVC+D DF +E++YLK KV+AGAD +ITQM FD+ VY AF++AC A GI++P++PGIMC+   GGF+RM +FC +R P  L +  +    DD+EA+RK     G +L ++L  AGA GLH+Y LNL +V L I+  L L
Sbjct:    5 KISDRLQELSAKGEKFVSFEFFPPRTDDGVTSLMSRIQRYNDQQPLFMDMTWGAGGSTSDLTLDLCTRMVKECGANANMHLTCTNMPSEKIDIALKGARDAGIRNIVALRGDPPAGEEAWEAVEGGYSCALDLVKHIRKEHGDFFSIAVSGYPEGHPNAITKVQDEAELTESERERV-IEMED-----GLYVCRDGDFQKEMEYLKAKVDAGADLIITQMVFDAPVYGAFLKACKAYGINIPVVPGIMCIQNAGGFKRMTAFCKSRTPAAL-RAAVEAAGDDKEAIRKVAVEHGAQLCRDLQAAGAPGLHFYTLNLEKVTLAILDALNL 326          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: OLP90184.1 (Serine hydroxymethyltransferase 4 [Symbiodinium microadriaticum])

HSP 1 Score: 349.0 bits (894), Expect = 2.000e-92
Identity = 172/316 (54.43%), Postives = 221/316 (69.94%), Query Frame = 0
Query:   33 WFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQV-GGLEGL--SEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLG 346
            WFSFE++PPKTPEGVE L +R+ KM    PLF DFTWGAGGST+ELTL+LT  A+  FG +ANMHLTCTN  +E    AL + K+ G+ NI+ALRGDPP GQE+W   EGGF SALDLV +IR+N+G +FSV VAGYPEGHP+ I  V GG+  L  SE  R RV  + +    VT   VC+D +F +E+ YLK+KV+AG+ FVITQMF D++V++ FV+ C    I VPI+PGIMC+N  GG +RM   C TR+P+ L  E        +EA +++G   GV + Q+LL  GA GLH+Y LNL +V +GI+ GLG
Sbjct:  564 WFSFEYFPPKTPEGVENLRKRIVKMKSLGPLFTDFTWGAGGSTSELTLKLTSAAKNEFGTVANMHLTCTNQSSEMTGNALLECKQHGVRNIVALRGDPPRGQEKWTATEGGFSSALDLVKFIRQNHGDYFSVSVAGYPEGHPDNIEVVEGGVAALTASEKRRARVVTDAQGKEVVT---VCRDANFHKEMVYLKEKVDAGSHFVITQMFLDAQVFLDFVDECRKYDIKVPIVPGIMCLNGFGGLKRMTELCKTRLPEGL-LERAEKANTSDEAFKEFGIREGVAMCQKLLDGGAPGLHFYTLNLEKVVVGILKGLG 875          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: OLP95633.1 (Serine hydroxymethyltransferase 4 [Symbiodinium microadriaticum])

HSP 1 Score: 341.7 bits (875), Expect = 3.100e-90
Identity = 175/343 (51.02%), Postives = 232/343 (67.64%), Query Frame = 0
Query:   15 EDERIGDLLTQ-RAGHTTPWFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQV-GGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEI-----QYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMC-----VNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLG 346
            +D +I +L+ +  AG    WFSFE++PPKT EGVE L +R+ KM    PLF DFTWGAGGST+ELTL+LT  A+  FG +ANMHLTCTN  +E    AL + K+ G+ NI+ALRGDPP GQE+W   EGGF SALDLV +IRK++G +FS+ VAGYPEGHP+ I  V GG+  L+E+E+ R  V ++  G  T   VC+D +F +E+      YLK+KV+AGA FVITQMF D++V++ FV+ C    I VPI+PGIMC     +N +GG +RM   C TRVP+ L  E        +EA +++G   GV + + LL  GA GLH+Y LNL +V +GI+ GLG
Sbjct:  588 DDHKIDELVEKVPAG----WFSFEYFPPKTAEGVENLRKRIVKMKALGPLFTDFTWGAGGSTSELTLKLTSAAKNEFGTVANMHLTCTNQSSEMTENALKECKQLGVRNIVALRGDPPRGQEKWTATEGGFSSALDLVKFIRKHFGDYFSISVAGYPEGHPDNIETVEGGVAALTESEKRRARVVKDASGKET-VTVCRDANFHKEMVYLDRPYLKEKVDAGAGFVITQMFLDAQVFLEFVKECRKYDIKVPIVPGIMCTCLRGLNGLGGLKRMTELCKTRVPEGL-MERAEKANTSDEAFKEFGIQEGVAMCKALLEGGAPGLHFYTLNLEKVVVGILKGLG 924          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: EJK69517.1 (hypothetical protein THAOC_09218 [Thalassiosira oceanica])

HSP 1 Score: 335.5 bits (859), Expect = 2.200e-88
Identity = 175/363 (48.21%), Postives = 236/363 (65.01%), Query Frame = 0
Query:   16 DERIGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKLYERLAKM-APYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNM-----PTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLE--GLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGLGPQSADTPPHRVEKVDEKPIKSLV 371
            D +I DLL+++A +     S E++PP+T +GV+ L+ R+ +M      L+ D TWGAGGSTAEL+L+L + A R  G ++N+HLTCTNM     P + V EAL  A + GI NI+ALRGDPP G + W   EGGF  ALDLV YIRK +G  F + VAGYPEGHPNRISQ+   E   +S++E+GR       DG     YVCKD D+ +E+ YLK+KV+AG DF+ITQMFFD+EV+  FV+ C   GI+ P++PG+MC+N   GF++M  FC TRVP  L ++M ++ KDD +AV+K+G  FG  + + LL +G   LH+Y LNL +V  GI   LG+           VEK DEK  K +V
Sbjct:   10 DAKIIDLLSKKADNGIAHVSLEYFPPRTEQGVKNLHARMERMKTNTTALYTDMTWGAGGSTAELSLDLALHAHRT-GHVSNLHLTCTNMEKDGDPVKAVREALQAAYDGGIRNIVALRGDPPEGSDEWTAAEGGFACALDLVRYIRKEFGDSFGISVAGYPEGHPNRISQLTDEEAANMSDSEKGRCCT---HDGIT---YVCKDDDYKKEMDYLKEKVDAGGDFIITQMFFDAEVFKTFVKDCREWGINCPVVPGLMCINAYPGFKKMTKFCKTRVPKDLGEKMDAM-KDDPDAVKKFGVTFGSEICRSLLDSGVEILHFYTLNLEKVVYGITDDLGI-------TSGLVEKSDEKDAKDMV 357          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: OEU18848.1 (methylenetetrahydrofolate reduct [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 327.8 bits (839), Expect = 4.700e-86
Identity = 164/334 (49.10%), Postives = 225/334 (67.37%), Query Frame = 0
Query:   18 RIGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKLYERLAKM-APYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNM-----PTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLG 346
            +I DL+  +   + P+ S EF+PP+T +GV+ LY R+ +M    NPLF D TWGAGGSTAELTL++  E     G +ANMH+TCTN+     P   V  AL  AK+ GI NI+ALRGDP  GQE W+  +GGF  ALDLV Y+ +N+G+ F + VAGYPEGHPN IS+V     +SEAE+ R ++   E G V   Y C+D D+ +E+ YLK+K++AGADF+ITQMFFD++V+  FV+ C   GI+ P++PG+MC+N   GF +M  FC TRVP +L  +M S+ KDD +AV+ +G  FG+++ Q+L   G   LH+Y LNL +   GI+ GLG
Sbjct:    3 KIIDLIKAKEEGSKPFISIEFFPPRTADGVKNLYARMDRMKESINPLFSDVTWGAGGSTAELTLDIA-EQLSTTGHVANMHMTCTNLEKGGDPKAAVRGALETAKKNGINNIVALRGDPAAGQEEWKAADGGFTCALDLVEYMTENFGSEFGISVAGYPEGHPNAISEVEDPSSMSEAEKARSSM---EGGKV---YTCRDADYKKEMDYLKKKIDAGADFIITQMFFDTKVFGTFVKDCKTWGINCPVVPGLMCINAYAGFVKMTGFCKTRVPAELRAKMDSI-KDDPDAVKAFGIEFGIQMCQDLTEIGVEVLHFYTLNLEKTTYGILKGLG 328          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: CBX19675.1 (methylenetetrahydrofolate reductase [Polytomella sp. Pringsheim 198.80])

HSP 1 Score: 316.6 bits (810), Expect = 1.100e-82
Identity = 149/332 (44.88%), Postives = 223/332 (67.17%), Query Frame = 0
Query:   18 RIGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLEGLSEAERGRVAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGLGPQ 350
            +I D +  +     P+FSFEF+PP+T EGVE L+ER  ++  Y P+F D TWGAGGSTA++T ++ ++ +   G+   MHLTCTNMP E++  AL + ++AG+ NILALRGD P GQ+++E +EGGF  ALDLV YI+K +G++F +GVAGYPE HP+ I        + + E+ +                   +++ + I+YLK+KV+AGADF+ITQ+F+D+ +++ F+  C AAGI  PI+PGIM + +  GF+RM SFC T VP  +   + ++ KDDEEA++ +G ++GV + +++L AGA G+H Y LNL R A+GIV  LG+ P+
Sbjct:    2 KIIDKINLKIEERRPFFSFEFFPPRTEEGVENLFERQERLVSYGPVFCDITWGAGGSTADVTQDIAVKMQNLVGVETMMHLTCTNMPKERLEIALKEVQKAGVKNILALRGDAPKGQDKFEAIEGGFSCALDLVKYIKKEFGSYFGIGVAGYPEAHPDSI--------VDDPEQMK-------------------KNYFENIEYLKKKVDAGADFIITQLFYDANIFIKFMNDCRAAGITCPILPGIMPIASYAGFKRMTSFCKTHVPQHILDAVEAI-KDDEEAIKNFGISYGVEMCRKVLAAGAPGVHLYTLNLERSAVGIVEKLGIMPE 305          
BLAST of NO17G01280 vs. NCBI_GenBank
Match: XP_005763162.1 (putative methylenetetrahydrofolate reductase [Emiliania huxleyi CCMP1516] >EOD10733.1 putative methylenetetrahydrofolate reductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 313.5 bits (802), Expect = 9.100e-82
Identity = 161/318 (50.63%), Postives = 217/318 (68.24%), Query Frame = 0
Query:   32 PWFSFEFYPPKTPEGVEKLYERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTCTNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDLVTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGL-EGLSEAERGR-VAVEREEDGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEACHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDEEA-VRKYGTAFGVRLSQELLLAG-ASGLHYYCLNLSRVALGIVTGLG 346
            P+ SFE++PPKTPEGV KL++ + +M    PLFVDFTWGAGGS+A+LTLEL+  ++++  ++ NMHLTCTN   E     LA AKEAGI NI+ALRGDPP GQ++WE  EGGF  ALDLV Y+R NYG +FS+ VAGYPEGHP+RI++V  +   LS+ E+ R V V+ EE       +VC D+++A E+ YLKQK +AG D +ITQ+F+D EV+ A+V+    AGI  PI PGIM +N  GGF+RM  FC TR+P  + K +  L  DD++A   +YG  +   L ++L+ +    GLH+Y LN S     I+  LG
Sbjct:   39 PFISFEYFPPKTPEGVVKLHKVIDEMCKQKPLFVDFTWGAGGSSADLTLELSKTSQQKHNVMVNMHLTCTNQSKEVCDAGLAGAKEAGICNIVALRGDPPKGQDKWEVTEGGFACALDLVKYMRTNYGDYFSIQVAGYPEGHPDRITKVSEMSRPLSDREKMRLVDVDGEE-------FVCTDENYAIELDYLKQKCDAGGDVIITQLFYDFEVFKAWVQDLRDAGITAPIFPGIMPLNACGGFKRMTGFCKTRIPPAMAKRVAELSGDDKKAEFAEYGIDYLTDLCKQLVASKLVPGLHFYALNQSERTFQILKRLG 349          
The following BLAST results are available for this feature:
BLAST of NO17G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24226.11.300e-16574.94methylenetetrahydrofolate reductase [Nannochlorops... [more]
CBN79552.11.900e-10055.91conserved unknown protein [Ectocarpus siliculosus][more]
GBG26935.12.900e-9653.35Methylenetetrahydrofolate reductase 1 [Aurantiochy... [more]
XP_001746001.11.500e-9251.67hypothetical protein [Monosiga brevicollis MX1] >E... [more]
OLP90184.12.000e-9254.43Serine hydroxymethyltransferase 4 [Symbiodinium mi... [more]
OLP95633.13.100e-9051.02Serine hydroxymethyltransferase 4 [Symbiodinium mi... [more]
EJK69517.12.200e-8848.21hypothetical protein THAOC_09218 [Thalassiosira oc... [more]
OEU18848.14.700e-8649.10methylenetetrahydrofolate reduct [Fragilariopsis c... [more]
CBX19675.11.100e-8244.88methylenetetrahydrofolate reductase [Polytomella s... [more]
XP_005763162.19.100e-8250.63putative methylenetetrahydrofolate reductase [Emil... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL157nonsL157Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR036ncniR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR030ngnoR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002918NSK002918Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01280.1NO17G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599934gene_7762Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g75gene6191Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01280.1NO17G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01280 ID=NO17G01280|Name=NO17G01280|organism=Nannochloropsis oceanica|type=gene|length=4888bp
TAGATAACGATCTCATGTGACGCTATTGATTTTTAAAGTGCTGCTGACTT
TTTATGTACAAGCCTCGCTTTTTCCCTGTCCCGGGTTCTCCGATAAATCG
TCTTCTATATCGCTATAATATCAAAACATATATGAATCATCCCCCTCCCT
TGATCCAGTCTTTTTTACACTTCCTTATTTTTACTACTGCTGCTGCTGCT
AGTGTGGATGCTAGTGCGGATGCTGCAACTGCTTGTGGACGCACTCGTCA
AAAACTTGCGCAGCCCCTTCCCCTCAGTCGCCGTGGCCTCTCGCGCTTTT
TTTCTATCCTTTCCCGTCTCCGCTTCGACCCTAACTTCTGCCCTTCTCTT
CACGACACCACCTGCTGCTTCTCCTTTCCGTCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGTTCCTGGTGGTGGTTGTACTGCTGATCCATCCCCT
CCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCGTCCTCCTCGTCCTCC
TGCTCCTGCTCCTGTTGCCTCCATGTTCACACCATTCTCAGTCGTAGTCG
TCGTCACTGTTGTTTTCTTAGCAGCAAAAAAACCCTTAATACTCTGTTGG
TTCGGATCAGGCAGCAGCTTCCGGAAGAGCACCCGTCCTTCCACCTTGGC
CTTGACGTCGCAGAGCAACGGCGACACTTGCACAGGCAGTACCGAAGAGA
ATGCCCGCGGCTGCTCCTCCCCACATTTCTGCAGCTGATGCTGATGCTGA
TGCTGCTGCTCCTGTGTGTGCTCTTGCTCGTGCTCCTGCGGCTTTCCCCC
TCCTTCCTCGCCCTCCATCCCTTCCTCCTTCCCTCCCTTGCTCCCAAATT
CCAGCTCCACCATCACCGGCATGTGATCGGACGCCTTATTGCTCCTCAAA
ACTCCACTGCCCAGAACCTCCGCCTTTGTTATTTTGGGCATCGTCTCCTC
TGGCGTGCTTGACAGCAAAATATAGTCAATCCTATACCCTTCATTCGCGC
CTCTTCTGGTCGTAATGTAGTTATCAAAAAACGAATAGGTGTCCGTCTCC
CTAGGATGCAACACCCTAAATGTATCTACATATCTCCCCCCCTCCAGCAC
CCGCGGAAACCAATGCCTCGTCCGTTCGTCCAAACCTTCCTCTTTCCAAA
ATTCCATATGCATATCTTCTTTCATATCTGCCACCAAATTCAAATCGCCC
ACCAGTACTACCCTTCTCCTCCTTTGTACTCTCCACTCCTCCATCTTCTT
CCATAGGGCCTCCAAAAAACGCCTCTTAAACTCTAATCTCGGCCTTCCCT
CCCCCCCGGCATTGGGACAATATACATTAAACAAAACAAAGTCACCGTGA
TCAGTAAGTAACACCCTGCCCTCCTTCGAGATTTCGAAACCTTCCTCATT
CTCCTCCTCTAAGAGTTCCACGTCGGTGTAAACTGCCGCTGGCTCAGCTT
TACAAAAAGTGGCAATGCCACAATAGCCCGGAATTTGTCCAATAGACCAG
TAGGTGAACCACCCTCCATCTGGCACCAGGAAAGAGGCTTGTTTTTTAGT
CACTTGCGCGAGGGTAAGCTTAGTTTCTGTGATGTAGAGGTAGAAATAGA
GGAACCATGTATATGTGGCGTAATGTCGGAGAGTGGGACATGCTAAGAAA
TGAAAATGGCACATGTCACGCATATCCGTGCATACCCTCTTTCTCTTCCT
GTGTCTCCCCTCCCTCTACACTCCATTTTTAGTGTAACTTTTCCTTCCTA
TCCAACTAATCCTACCTTAAAAGCACATAATGTCCACATTCAGGTCATCC
AAAAACTGTCTCTATCCATCTAATCCTACCTTGAAAGCACATAATGTCCA
CATTCAGGTCATCCAAAAACTGTCTCATACTGCCTTTTTCATGCTCAATG
AAGCCCTTCAAGGCCGGGAGGGACGCCACATTCCAGCTGATGATCTTCAT
TGCGTCTCGCACAGGTGCACGCGGCGAAGACCGTGGTGGGGATGGGTGTC
TTGAAGAACTAGTGGAGGGACTGTACGAAGGGCATTGGCAGAATGAAGCT
TTCATGTGTGCCATGAGGGAAGTAGATTCAGGTAGGAAGTCGATGTAAAT
AATCTGCTGGCACACTCCGGGGAGTCCCTTCCCTCCCCAATCATCCGAGT
CTTTGCCATCGGACATATCGATGGATACAAACGACCCATCACATACTTCG
ATGTATTAAGAGGCTCATTTAGGGGTGAAAATCGATCTCACTATCAGTCT
ATCCATCAGCTAGGCTAAATCATGTCTCACCTCACACACTATCTCTCTTA
TTCTCGCTCTCTCATAGCAGCACTACTAACGACCACAAATAGAAGAAAGA
AAGGTACTGAAGCAGTAGCGGCAACCGCAACAGCAAAAAAGTAATAAGCG
CTGTTGGGCCATCTCTTGTCCGCAGTCGCTTGCTCGGAAAGTCATCGGCG
TCAAGACGGTCATCGCTCGCCGCCTTGTGCTTAGTTAACCCTTGGTTTTC
CTCTTTACTCTCCACAGCGTCGAATTGGTGTGCGTATGCGACCGCACGCC
ACTCGTTCATTGACATCTCTGGCATCGCTGGGTTTGGTATGCCTGACCTC
GGGTGTTGATTTGATTGACAGCACAAACGCTCGCCGGCTTACGGTTGCAG
CGTCGCCTGTTGCTGCTCACCCATTGGCATTTGCTTGGCGGCGAAGATCT
CTGGGGCATTTGGCCAGTTCTCGTGCCCACCTCTTGCTCAAGCAAGATGG
GTGTCAAGCCTTGTATCTCGTCGAACTTGACTATACGAAGGCCGCGCTTT
ATTTGGGCGGCCGTTGCGTTGCTTTGAGTTTGGATCTCGCCACTCATCGC
TCGACGCGCCTCCTCTGCACCTCACCCGACATATCACACCCCCGACATAT
CACACAGGCACGGCACCCAAAAGGCAAACTAATTGCATTAGCAGCAGCAT
ACGGGAAGGATGACGGCTTTGGCATCAGGCGAGCAGGAGACCTCCAGAAA
TGAGGACGAGCGCATTGGGGATCTGTTGACGCAGCGTGCGGGCCATACCA
CCCCCTGGTTCTCCTTTGAGTTCTACCCACCTAAGACCCCCGAGGGCGTC
GAGAAGCTGTATGAGCGCTTGGCCAAGATGGCGCCTTACAATCCGCTGTT
TGTGGACTTCACGTGGGGCGCCGGCGGTTCTACGGCGGAGTTGACGCTGG
AGCTGACCATTGAGGCGAGGAGACGCTTTGGCTTGCTTGCCAACATGCAT
TTGACCTGCACCAACATGCCGACCGAGAAGGTCACAGAGGCTTTGGCTAA
GGCGAAGGAGGCAGGAATAACGAACATCCTCGCGTTGCGTGGCGgtacgt
atgatgttcttatgtgtaggggcgctttggatgggaccttcggctgcgta
ttctcgattcgtccctctaactttcttacacttctctttttcaacgacaa
aatagtgtgaccatccagtgtaaaatactagttacttgcatgcttccatt
tctcactccgtcaacacactctcccaccgcttctcaccccctcatcctat
ccacgtatatcacagACCCGCCTCTGGGTCAAGAACGGTGGGAGCCCGTG
GAAGGCGGCTTCTGTTCAGCCCTGGACCTGGTCACGTATATTCGCAAGAA
TTACGGCACCTTTTTCAGTGTTGGCGTGGCTGGGTACCCTGAGGGACACC
CCAACCGGATTTCGCAAGTGGGGGGGCTGGAGGGCCTGAGCGAGGCGGAG
CGGGGCAGGGTGGCGGTGGAGAGGGAGGAGGACGGGACAGTGACTGGCTT
TTATGTGTGCAAAGACCAAGACTTTGCGCAGGAGATTCAGTACTTGAAGC
AGAAAGTGGAGGCGGGGGCTGACTTTGTGgtaggttgtcgataaaacggg
catgggggttgaatttggggggttgggaaggtggaggggcttaaacttac
atgtcttaccaaactgttcgcggtaacttctttcgctacatttttttttc
gccaataattccgtcgctttttccctttcttgcagATCACACAAATGTTC
TTCGACTCGGAGGTGTACGTCGCTTTCGTCGAGGCCTGCCATGCCGCTGG
CATCCACGTGCCGATTATTCCGGGTATCATGTGTGTTAACACTGTCGGGG
GATTCAGGCGTATGGTTAGCTTTTGTCATACTCGTGTCCCTGACCAGCTG
TGGAAAGAGATGATGTCCTTGCCTAAGGATGACGAGGAGGCGGTGAGGAA
GTACGGCACCGCGTTTGGTGTGCGCTTGAGCCAGGAATTGCTATTGGCAG
GTGCGAGCGGACTGCACTATTATTGCTTGAATCTGTCGAGGGTCGCGTTG
GGGATTGTTACTGGTCTTGGATTGGGCCCGCAGAGTGCTGATACTCCCCC
TCACAGAGTGGAAAAGGTCGATGAAAAGCCGATTAAGTCGCTTGTGAATG
GTGCGGACAAGGAGGAGAAAGAGAAGGATTTGGACGGGGAGCTTGTGGGG
GCGGTAGCAAGCAGTTAGATGGGAGAGCAGGAAGAAGAGGGAGAGTAGGG
CATATTCGGGGAAGTTTGAATGTGAGTTTTGGTGCATGGTAGTGAGTGAG
GGATTTGTATGAATGGATTAGAGGGCGGTAGATAGATGCGTATGTGTGAG
AGAGTAACAGATTAAGAGTGACAACGGAGGGATAGGAAGTATTGACGCAG
AAGTAAGAGCATCTGCTGGGCCTCAACGATCGAAAAGAGAAGGTGAGGTC
CTGAAAGTAACATTTGAACGTACGTGTGTCCCTCTGCCAGTCGGTGAGTC
TTCCTGCCTGTGTTCGAAAAAAGAGAACGAGCTTCCCCCTCTTTTTCAGG
TGGACAACGATGTACCAAAAAGCAGCGGTCAAAGAAAC
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protein sequence of NO17G01280.1

>NO17G01280.1-protein ID=NO17G01280.1-protein|Name=NO17G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MTALASGEQETSRNEDERIGDLLTQRAGHTTPWFSFEFYPPKTPEGVEKL
YERLAKMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLLANMHLTC
TNMPTEKVTEALAKAKEAGITNILALRGDPPLGQERWEPVEGGFCSALDL
VTYIRKNYGTFFSVGVAGYPEGHPNRISQVGGLEGLSEAERGRVAVEREE
DGTVTGFYVCKDQDFAQEIQYLKQKVEAGADFVITQMFFDSEVYVAFVEA
CHAAGIHVPIIPGIMCVNTVGGFRRMVSFCHTRVPDQLWKEMMSLPKDDE
EAVRKYGTAFGVRLSQELLLAGASGLHYYCLNLSRVALGIVTGLGLGPQS
ADTPPHRVEKVDEKPIKSLVNGADKEEKEKDLDGELVGAVASS*
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Synonyms
Publications