NO17G01110, NO17G01110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G01110 vs. NCBI_GenBank
Match: EWM24279.1 (pentatricopeptide repeat-containing protein chloroplastic [Nannochloropsis gaditana]) HSP 1 Score: 792.0 bits (2044), Expect = 2.800e-225 Identity = 607/1111 (54.64%), Postives = 731/1111 (65.80%), Query Frame = 0 Query: 154 EAVQADWRQPIGSSSSSFGRGSQRTRPTGILPSIISPPLPAPTAGELGHQQVLPENAPARASIVAAMARGEPATVVELVQQLGVEGVYRLDLPLACRLVDACVHTRAWHLVIEGLCPCPAFPMDHRVCLHILQACSRMKSWQPVLALLRKSMPLRGVPLTAEVYRAALVACGRCHEAGEVRKLLEEMQARRFLNIRNMRDMHALVLEAAGADGWDAALMVCQQYF-----GIAASGKARGVGYNKRIAAVVAAAAEPVSQETSVLEGEMLEATIEVCRRTLREAHRKNERAMLVRMHDRLWGVVREARRTRGVELSKGAWASLIQVGSKAGKTYDVSSMMEAMVAEDVEGESRLGERARWRKVALQRCWVSNDWVGARRVLEEMWKKREREASPQSDGLLHLVMSCGLKGGMEREALQLFEAWWDADLTFSPDTRCRILATRCALRLAHLPVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVEYSTAPATGLVPLGSLLDRFDKRAPGQKVIVCNMVMEHVRVKGLIREGLSFLDAMRALHIPRKSLTLLPLLKLCASSGRVQEMVTLVEEMKDKDHVAPTAHMYSQTIEAAASAGMVDEALRLFATMNAEGVAVSEGSCIDLMAALARNGDWSRALDLLQDVRACTKRPPTCIIYTTAVNACGNGGAWEMALMLMKRMEEEGIA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYLWDMLEYTDSTSLNQPTLNSLICSMEHPALLPTMAWYYKRAYERGRVNHWSIQFFRVMDLHNFSRPLSKAALYHVLTSMLRKYGPEITKDANRRS--EELTTAATAATATAARPFTEKMARGTFKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSPSEMYLPWPRNQSRHGYIQDPRDPLIIVTGHGRRRAAGTSILRDDVSEFLKSEFRPSLPTETVPYNPGRLLVPSQSLLAYVRA 1257 E QA WR + G QR RP ++ SP +L +Q+LP++APAR +++ A+ G T V+++QQL EGVY LD PLAC+LVD CV ++AW +V+ L PCPAFPMD +C +IL+AC R + W+P LAL+R MP RG+ T E Y L+ CGRC EAGEV +LLEEM ARR L + +DM L ++AA A W+A L+VCQ+Y G G+ G +R A S LE EM+EATI C+R LREAHR NE A+L RM RLW +V+E +R RG+EL + AW SL+ V SKAG T +S MM+A VA D +S G A+ R AL+RCWV DW AR +L RE+ P+SD L+ +V+ CGL+G +E+EAL +F AWWDAD +FSP +RCR+ A R AL+LA + + E + ++GL L LLDRF++RAP Q+ IVCNMVMEH RV L+ EG +FL+AMRAL IPR+S TL PLLKLC+S+ R +++V LV EM +KD + P A YSQ IEAA A MV+EAL+LF TM AEG + C DLMAALARNGDWSRALDLLQD+R TKRPP CI+YT AVNACGNGGAWEMALMLM+RMEEEGIA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AYLWD++E D LNQPTLNSLIC+MEHPAL +A +Y+RAY++G+VNHWS+ F+RV+DLHNFSRPL+KAAL+HVL ML K+GP + +D + S EE+ T + A PF WS SEMYLPWPRN++RHGY+QDPRDPL+IVTGHGR+RAAGTS+LRDD+++FL SEF P L T+T+PYNPGRLLVPS +LL Y+ A Sbjct: 125 ENSQAGWRCAPTGVNKGVALG-QRARPQQVILR-QSPASSGTVVKDL--RQILPDDAPARTAMLKALEGGHVGTCVQVLQQLSAEGVYSLDKPLACQLVDKCVESKAWPVVMNSLLPCPAFPMDTGMCSYILEACLRARRWRPALALVRSRMPSRGLQPTREAYEGVLMVCGRCQEAGEVLRLLEEMHARRLLETGSAKDMRDLAVKAAAAGAWEAGLIVCQEYLRTVPGGTVGKGERFLPGMRQR-GRTPAPEVPRWSASVVELEAEMVEATILACQRDLREAHRMNEHALLSRMCTRLWELVQEMQRRRGLELGRRAWDSLVHVCSKAGNTQLISQMMDA-VAVDERVDS--GHWAQ-RHAALRRCWVDRDWARARALLGSFLASCGRESPPESDELVTMVLDCGLRGDLEQEALAVFNAWWDADPSFSPSSRCRVKAVRTALKLARVSSA--------------------------FPSLSVTPPRDSNSLDSLRIQVGATEEARIGSSGLQGLADLLDRFERRAPSQRAIVCNMVMEHARVHRLVEEGFAFLEAMRALDIPRQSATLQPLLKLCSSANRQRDVVRLVGEMVEKDKLKPQAQTYSQVIEAATRADMVEEALKLFQTMIAEGFPAGDKECTDLMAALARNGDWSRALDLLQDIRVYTKRPPACIVYTAAVNACGNGGAWEMALMLMRRMEEEGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMLTSRDGSSHVCYMLAVDACRRSDQWPVAAYLWDLIELVDPKELNQPTLNSLICAMEHPALHSLVASFYQRAYDKGQVNHWSVAFYRVVDLHNFSRPLAKAALHHVLECMLEKHGPGVARDLSIVSDGEEMGTKEEKGFRSTA-PFQSLSGE-------------------IPCDPAISTQTDKKWSASEMYLPWPRNKARHGYVQDPRDPLVIVTGHGRKRAAGTSVLRDDIADFLASEFDPPLTTKTMPYNPGRLLVPSSTLLTYLLA 1180
BLAST of NO17G01110 vs. NCBI_GenBank
Match: XP_005856213.1 (hypothetical protein NGA_2036000, partial [Nannochloropsis gaditana CCMP526] >EKU20146.1 hypothetical protein NGA_2036000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 456.8 bits (1174), Expect = 2.100e-124 Identity = 397/601 (66.06%), Postives = 452/601 (75.21%), Query Frame = 0 Query: 659 ATGLVPLGSLLDRFDKRAPGQKVIVCNMVMEHVRVKGLIREGLSFLDAMRALHIPRKSLTLLPLLKLCASSGRVQEMVTLVEEMKDKDHVAPTAHMYSQTIEAAASAGMVDEALRLFATMNAEGVAVSEGSCIDLMAALARNGDWSRALDLLQDVRACTKRPPTCIIYTTAVNACGNGGAWEMALMLMKRMEEEGIA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYLWDMLEYTDSTSLNQPTLNSLICSMEHPALLPTMAWYYKRAYERGRVNHWSIQFFRVMDLHNFSRPLSKAALYHVLTSMLRKYGPEITKDANRRS--EELTTAATAATATAARPFTEKMARGTFKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSPSEMYLPWPRNQSRHGYIQDPRDPLIIVTGHGRRRAAGTSILRDDVSEFLKSEFRPSLPTETVPYNPGRLLVPSQSLLAYVRA 1257 ++GL L LLDRF++RAP Q+ IVCNMVMEH RV L+ EG +FL+AMRAL IPR+S TL PLLKLC+S+ R +++V LV EM +KD + P A YSQ IEAA A MV+EAL+LF TM AEG + C DLMAALARNGDWSRALDLLQD+R TKRPP CI+YT AVNACGNGGAWEMALMLM+RMEEEGIA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AYLWD++E D LNQPTLNSLIC+MEHPAL +A +Y++AY++G+VNHWS+ F+RV+DLHNFSRPL+KAAL+HVL ML K+GP + +D + S EE+ T + A PF WS SEMYLPWPRN++RHGY+QDPRDPL+IVTGHGRRRAAGTS+LRDD+++FL SEF P L T+T+PYNPGRLLVPS +LL Y+ A Sbjct: 48 SSGLQGLADLLDRFERRAPSQRAIVCNMVMEHARVHRLVEEGFAFLEAMRALDIPRQSATLQPLLKLCSSANRQRDVVRLVGEMVEKDKLKPQAQTYSQVIEAATRADMVEEALKLFQTMIAEGFPAGDKECTDLMAALARNGDWSRALDLLQDIRVYTKRPPACIVYTAAVNACGNGGAWEMALMLMRRMEEEGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMLTSRDGSSHVCYMLAVDACRRSDQWPVAAYLWDLIELVDPKELNQPTLNSLICAMEHPALHSLVASFYQQAYDKGQVNHWSVAFYRVVDLHNFSRPLAKAALHHVLECMLEKHGPGVARDLSIVSDGEEMGTKEEKGFRSTA-PFQSLSGE-------------------IPCDPAISTQADKKWSASEMYLPWPRNKARHGYVQDPRDPLVIVTGHGRRRAAGTSVLRDDIADFLTSEFDPPLTTKTMPYNPGRLLVPSSTLLTYLLA 628
BLAST of NO17G01110 vs. NCBI_GenBank
Match: PON32395.1 (DYW domain containing protein [Parasponia andersonii]) HSP 1 Score: 66.6 bits (161), Expect = 6.200e-7 Identity = 53/205 (25.85%), Postives = 84/205 (40.98%), Query Frame = 0 Query: 652 VEYSTAPATGLVPLGSLLD--RFDKRAPGQKVIVCNMVMEHVRVKGLIREGLSFLDAMRALHIPRKSLTLLPLLKLCASSGRVQEMVTLVEEMKDKDHVAPTAHMYSQTIEAAASAGMVDEALRLFATMNAEGVAVSEGSCIDLMAALARNGDWSRALDLLQDVRACTKRPPTCIIYTTAVNACGNGGAWEMALMLMKRMEEEGI 855 + + A T G+L D R R P + N ++ G+ E LS + M +I S+T + +L CA +G+V+E MK+K + P YS I+ AG +DEA +L M ++ S L+ A ++G+ + A V P + Y N N G WE + K M + G+ Sbjct: 381 ISVNNAIVTMYSKCGNLTDARRLFDRMPEHNAVSLNSMIAGYAQHGIGIESLSLFEKMLQTNIIPTSITFISVLSACAHTGKVEEGQKYFSMMKEKFGIEPEEEHYSCMIDLLGRAGKLDEAEKLIEKMPFSPGSIGWAS---LLGACRKHGNMALAQKAADQV--LRLEPSNAVPYVVLANMYANAGRWEEVATIRKLMRDRGV 580
BLAST of NO17G01110 vs. NCBI_GenBank
Match: PON92170.1 (DYW domain containing protein [Trema orientalis]) HSP 1 Score: 66.2 bits (160), Expect = 8.200e-7 Identity = 51/191 (26.70%), Postives = 81/191 (42.41%), Query Frame = 0 Query: 666 GSLLD--RFDKRAPGQKVIVCNMVMEHVRVKGLIREGLSFLDAMRALHIPRKSLTLLPLLKLCASSGRVQEMVTLVEEMKDKDHVAPTAHMYSQTIEAAASAGMVDEALRLFATMNAEGVAVSEGSCIDLMAALARNGDWSRALDLLQDVRACTKRPPTCIIYTTAVNACGNGGAWEMALMLMKRMEEEGI 855 G+L D R R P + N ++ G+ E L + M +I S+T + +L CA +G+V+E MK+K + P A YS I+ AG +DEA +L M ++ S L+ A +++G+ + A V P + Y N N G WE + K M + G+ Sbjct: 395 GNLNDARRLFDRMPEHNAVSLNSMIAGYAQHGIGMESLCLFEKMLRTNIIPTSITFISVLSACAHTGKVEEGQKYFSMMKEKFGIEPEAEHYSCMIDLLGRAGKLDEAEKLIEKMPFSPGSIGWAS---LLGACSKHGNMALAQKAADQV--LRLEPSNAVPYVVLANMYANAGRWEEVATVRKLMRDRGV 580 The following BLAST results are available for this feature:
BLAST of NO17G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G01110 ID=NO17G01110|Name=NO17G01110|organism=Nannochloropsis oceanica|type=gene|length=4110bpback to top protein sequence of NO17G01110.1 >NO17G01110.1-protein ID=NO17G01110.1-protein|Name=NO17G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1272bpback to top Synonyms
Publications
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