NO17G00990, NO17G00990 (gene) Nannochloropsis oceanica

Overview
NameNO17G00990
Unique NameNO17G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length678
Alignment locationchr17:316413..317090 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:316413..317090 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0060271cilium assembly
GO:0042073intraciliary transport
GO:0006270DNA replication initiation
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0015631tubulin binding
GO:0005524ATP binding
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0030992intraciliary transport particle B
GO:0042555MCM complex
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029600IFT81
Homology
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BLAST of NO17G00990 vs. NCBI_GenBank
Match: CCI44296.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 0 
Query:   13 LQSIVTRLHEPPFSLSFPGGVHDLAAEPPN-ALLQLLYHILSYLEPCMALDVKTASEDERVARTVDFLSMLKCPFLMPATDEEGEAMLVQGLLLGDKATLFPVLAWCLNNLSHLHRRRTWEIPHAVDV 140
            LQ IV  L + PF L       D   E  N  LLQ+L  +  +++   A+D++T ++D+R AR ++ L +L+ P    ++D E       GL+ G +  ++P+L W L NL+H H++R +   + V V
Sbjct: 2251 LQFIVDHLKKEPFKLDLTLVAFD---EKNNFELLQILNTVFVHIDAKHAVDLRTEADDDRAARMLESLQLLRYPLPSSSSDMEN---FRDGLVQGYRGVVYPILHWALKNLAH-HQKRAYLAKYLVSV 2371
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BLAST of NO17G00990 vs. NCBI_GenBank
Match: XP_013415931.1 (intraflagellar transport protein 81 homolog [Lingula anatina] >XP_013415932.1 intraflagellar transport protein 81 homolog [Lingula anatina])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = 0 
Query:   13 LQSIVTRLHEPPFSLSFPGGVHDLAAEPPNALLQLLYHILSYLEPCMALDVKTASEDERVARTVDFLSMLKCPFLMPATDEEGEAMLVQGLLLGDKATLFPVLAWCLNNLSHLHRR 129
            L+ IV  L++ PF+ ++     D  A  P +LLQ L  +L+ ++P   +D++  S D+   R ++ L +LK     P TD    +   QGL+ G+K  ++P+L W L N S L +R
Sbjct:    5 LKFIVQELNKEPFNKNYNLISFDSLA--PESLLQTLNDVLADIDPKNKIDIREESADQTTVRLMETLRILK---YRPPTDSSNVSAFRQGLVQGNKPVVYPILEWLLQNKSDLKKR 115
The following BLAST results are available for this feature:
BLAST of NO17G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
CCI44296.11.100e-732.03unnamed protein product [Albugo candida][more]
XP_013415931.11.900e-732.76intraflagellar transport protein 81 homolog [Lingu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR085ngnoR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00990.1NO17G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00990.1NO17G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00990 ID=NO17G00990|Name=NO17G00990|organism=Nannochloropsis oceanica|type=gene|length=678bp
ATGCCAGATCCTGGCCAAGACAAAGGCTTAACGCTACTACAATCAATCGT
CACCCGGCTGCACGAACCTCCCTTCTCCCTGTCGTTCCCCGGAGGAGTCC
ATGACCTCGCCGCCGAGCCTCCCAACGCCCTCCTGCAGCTCCTGTACCAC
ATCCTCTCGTATCTCGAGCCTTGCATGGCCCTAGATGTCAAGACCGCGTC
GGAAGACGAGCGTGTGGCACGCACGGTAGATTTTCTTAGCATGCTCAAGT
GTCCTTTCTTAATGCCTGCCACGGATGAAGAGGGGGAAGCAATGCTGGTC
CAGGGCCTGCTACTAGGTGATAAGGCTACCCTTTTTCCTGTTCTGGCATG
GTGCCTCAATAATCTCTCCCATCTCCACCGACGGCGTACCTGGGAGATAC
CTCATGCCGTGGATGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATCTGGTGTTTCGATCCCCACGCCATCCACCAC
CGCGCCTGCCACCTTCTGGTGCTCCTGTCCCTCCTGTAAGAACCGCACGG
CCGGGATGGCCCGCTGTTGGGAAACCACCGGGTTCATATTGGGCCCTGGC
CGCGTATTCCCTGCAGGGGGCCTCATAA
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protein sequence of NO17G00990.1

>NO17G00990.1-protein ID=NO17G00990.1-protein|Name=NO17G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MPDPGQDKGLTLLQSIVTRLHEPPFSLSFPGGVHDLAAEPPNALLQLLYH
ILSYLEPCMALDVKTASEDERVARTVDFLSMLKCPFLMPATDEEGEAMLV
QGLLLGDKATLFPVLAWCLNNLSHLHRRRTWEIPHAVDVXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXLVFRSPRHPPPRLPPSGAPVPPVRTAR
PGWPAVGKPPGSYWALAAYSLQGAS*
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Synonyms
Publications