NO17G00940, NO17G00940 (gene) Nannochloropsis oceanica

Overview
NameNO17G00940
Unique NameNO17G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr17:305105..306778 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtection of telomeres protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:305105..306778 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043047single-stranded telomeric DNA binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000784nuclear chromosome, telomeric region
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR028389POT1
IPR011564Telomer_end-bd_POT1/Cdc13
Homology
BLAST of NO17G00940 vs. NCBI_GenBank
Match: EWM21117.1 (hypothetical protein Naga_100041g10 [Nannochloropsis gaditana])

HSP 1 Score: 193.7 bits (491), Expect = 1.500e-45
Identity = 114/223 (51.12%), Postives = 139/223 (62.33%), Query Frame = 0
Query:    7 GGEPAAPYTVGAAGAANQPHQPPPGHATRIPDIDLATTRVAGVRGVVRAKRGLRQCVQSGHRGXXXXXXXXXXXAVDDGPLAALATTVVSCTLHGIDGAGLPNSRIQVFFYDKWADEIEGCLENGYSLTLTGPGCMVRAVPAGDHPCALLVAPPALLSDVASLGAPST---RVRVDLKHPEGAELNMDLDLDQNTMDARVEAFKSTCARRGGGRGGKEEGRVQ 227
            GG  A     G   A N P     G AT I  I+LATT +  V+G V A +GLR C++    G            +D+GPLA++ATTVVSCTLHG DG G P++RI+VFFYDKWA+EI  CLEN   L+LTGPG MVRAVP GDH CAL+VAPP L      LGA  T   R+++ L H +G EL +DL+LDQNT+DAR EA+K  C  R G  G   +G VQ
Sbjct:   12 GGHDADGKRDGMLRAKNTPQ----GVATCIASINLATTELLNVQGKVHAMQGLRACIRD-EEGVSGGTAGLLGGPLDNGPLASMATTVVSCTLHGADGNGRPSNRIRVFFYDKWAEEIGDCLENNCLLSLTGPGEMVRAVPTGDHGCALVVAPPVL------LGASHTNTPRIKLVLTHEKGPELTLDLELDQNTLDARAEAYKLACGGRRGSAG--VQGHVQ 221          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: CBJ28873.1 (POT1 protection of telomeres 1 homolog [Ectocarpus siliculosus])

HSP 1 Score: 86.7 bits (213), Expect = 2.600e-13
Identity = 91/370 (24.59%), Postives = 142/370 (38.38%), Query Frame = 0
Query:   93 TVVSCTLHGIDGA-GLPNSRIQVFFYDKWADEIEGCLENGYSLTLTGPGC-MVRAVPA----GDHPCALLVAPPALLSDVASLGAPSTRVRVDLKHPEGAELNMDLDLDQNTMDARVEAFKSTCARRGGGRGGKEEGRVQGSXXXXXXXXGRGTIGGGVLMPT----------RKYEYSKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHRSQYVVARRK-----------------------------------------PGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRW 406
            T+   +L G  GA G  + RI  +FYDKWAD+    +  G  + ++GP   +V   P+    GDHP   LV        + +LGA      V   H  G                         A   GGR  + +  V           G G+ GG    PT            Y Y+    IR++ +   + N++ +V SF     + G D + S  L+DE+   +D  + CN F       P    VG+++R HR KV+EY+GRPQL+  G    + ++V R+K                                         P AG   ++ V     WE++ +S N+T  + D+   +++  W
Sbjct:   85 TLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFC-LVFHTGRDDSLLALGA------VAADHLAGV------------------------AGGSGGRSDEADDVVSCKVVRKAAQPGAGSRGGAA--PTXXXXXXXXXXXXYAYTTLDSIRVQEE---KTNVYGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDDAVPCNFFSSTLKGLPAPLMVGDIVRLHRAKVQEYRGRPQLLAAG---GAAWLVIRKKKAMRETYQKCPIGGISPASXXXXXXXXXXXXXXXXXXXXXGPDAGGGEADAVLPATDWEVQSSSANYTLSQVDQDRCIALSDW 415          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: XP_019613594.1 (PREDICTED: protection of telomeres protein 1-like [Branchiostoma belcheri])

HSP 1 Score: 73.2 bits (178), Expect = 2.900e-9
Identity = 46/161 (28.57%), Postives = 76/161 (47.20%), Query Frame = 0
Query:  250 RKYEYSKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQ-LVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRWREMT 410
            R Y Y+K  ++++       +N++A V  F  P  + GTD+     LVD +  + D GL C  F     + P++ +VG+++R HR+KV  ++  PQ   GPG       +V   +PGA              +    S+NFTF   D+  +L +  W  +T
Sbjct:   31 RTYGYTKLCDVKVR----TTVNVYAAVKFFKPPFRSRGTDYCMVVRLVDPSLDNLDDGLKCLFFAKEQSILPQIHSVGDIIRIHRLKVDNFRDEPQGNKGPG----FSCLVFDGRPGA------------TVDPRSDSQNFTFGPEDEEKVLELRDWVALT 171          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: GAY04285.1 (Hypothetical protein PINS_012112 [Pythium insidiosum])

HSP 1 Score: 73.2 bits (178), Expect = 2.900e-9
Identity = 46/169 (27.22%), Postives = 83/169 (49.11%), Query Frame = 0
Query:  243 GGVLMPTRKYEYSKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRW-REMTC 411
            GG       Y Y+K GE+          N++ +V +   P+ ++G+D+  S  ++DETT   +      +F P+ D  PK+  VG+++R H++K+  YQ R Q  G      ++Y+V RR+            ++G  E +  + ++TFD SD+     +  W R++ C
Sbjct:  216 GGHATRGSPYIYTKLGEL-----IPGNANLYGVVVNMSLPKRSDGSDYYMSVQIIDETTPRREDATQVMVFYPSLDRMPKILYVGDVVRFHKIKINRYQDRIQ--GICSSRATRYLVLRRR------------DDGTIEQQTDNSSWTFDVSDEERFRQLSEWSRQILC 365          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: XP_002605617.1 (hypothetical protein BRAFLDRAFT_232831 [Branchiostoma floridae] >EEN61627.1 hypothetical protein BRAFLDRAFT_232831, partial [Branchiostoma floridae])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  252 YEYSKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQ-LVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRWREMT 410
            Y Y+K  ++++       +N++A V  F  P  + GTD+     LVD +  D D GL C  F     + P++ ++G+++R HR+KV  Y+G PQ   GPG       +V   + GA              +    S+NFTF+  D+  +  + +W  +T
Sbjct:    1 YSYTKLCDVKVR----TTVNLYAAVKFFKPPFPSRGTDYCMVAKLVDPSLDDLDEGLKCLFFAKEESLLPQIYSIGDIVRIHRLKVDNYRGAPQGNKGPG----FSCLVFDGRQGA------------PTQPRSDSQNFTFEPEDEEKVYRLRQWVTLT 139          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: GAX97229.1 (Hypothetical protein PINS_005129 [Pythium insidiosum])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = 0
Query:  243 GGVLMPTRKYEYSKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRW-REMTC 411
            GG       Y Y+K GE+          N++ +V +   P+ ++G+D+  S  ++DETT   +      +F P+ D  PK+  VG+++R H++K+  YQ R Q  G      ++Y+V RR+            ++G  E +    ++TFD SD+     +  W R++ C
Sbjct:  126 GGHATRGSPYIYTKLGEL-----IPGNANLYGVVVNMSLPKRSDGSDYYMSVQIIDETTPRREDATQVMVFYPSLDRMPKILYVGDVVRFHKIKINRYQDRIQ--GICSSRATRYLVLRRR------------DDGTIEQQTDXSSWTFDVSDEERFRQLSEWSRQILC 275          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: PSC73539.1 (protection of telomeres 1 [Micractinium conductrix])

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-8
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 0
Query:  267 GKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTD--ADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVG 349
            G  +NIWA+V     PRAT GTD   +  LVD +T D     G+    F  +AD  P V   G+++R HRVK+  +Q +PQL+G
Sbjct:  180 GAAVNIWAVVAESSVPRATRGTDMVVNLTLVDPSTDDLALPAGIELLCFAASADELPTVHRPGDIIRLHRVKINRFQEKPQLLG 263          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: ETI44106.1 (hypothetical protein F443_11158 [Phytophthora parasitica P1569])

HSP 1 Score: 70.1 bits (170), Expect = 2.500e-8
Identity = 43/156 (27.56%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  271 NIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRWREMTCLPSWGWIKQDFNLGPK 427
            +I+ +V +   P+ T+G DF  +  + DE+       +  NIF P  +  PK++ VG+++R H+VK+++YQ R Q  G      ++++V R K              G  E    S+ +TF+ SD+L    + +W   + L     + Q  +L PK
Sbjct:  225 DIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQ--GLSLSRATRHLVLREK------------ANGSLEQVTNSDTWTFESSDELRTRKLLKWARKS-LAEDDTLPQGCSLAPK 365          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: ETI44107.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569])

HSP 1 Score: 70.1 bits (170), Expect = 2.500e-8
Identity = 43/156 (27.56%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  271 NIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRWREMTCLPSWGWIKQDFNLGPK 427
            +I+ +V +   P+ T+G DF  +  + DE+       +  NIF P  +  PK++ VG+++R H+VK+++YQ R Q  G      ++++V R K              G  E    S+ +TF+ SD+L    + +W   + L     + Q  +L PK
Sbjct:  225 DIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQ--GLSLSRATRHLVLREK------------ANGSLEQVTNSDTWTFESSDELRTRKLLKWARKS-LAEDDTLPQGCSLAPK 365          
BLAST of NO17G00940 vs. NCBI_GenBank
Match: ETI44108.1 (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETI44109.1 hypothetical protein, variant 3 [Phytophthora parasitica P1569])

HSP 1 Score: 70.1 bits (170), Expect = 2.500e-8
Identity = 43/156 (27.56%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  271 NIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWRWREMTCLPSWGWIKQDFNLGPK 427
            +I+ +V +   P+ T+G DF  +  + DE+       +  NIF P  +  PK++ VG+++R H+VK+++YQ R Q  G      ++++V R K              G  E    S+ +TF+ SD+L    + +W   + L     + Q  +L PK
Sbjct:  143 DIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQ--GLSLSRATRHLVLREK------------ANGSLEQVTNSDTWTFESSDELRTRKLLKWARKS-LAEDDTLPQGCSLAPK 283          
The following BLAST results are available for this feature:
BLAST of NO17G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21117.11.500e-4551.12hypothetical protein Naga_100041g10 [Nannochlorops... [more]
CBJ28873.12.600e-1324.59POT1 protection of telomeres 1 homolog [Ectocarpus... [more]
XP_019613594.12.900e-928.57PREDICTED: protection of telomeres protein 1-like ... [more]
GAY04285.12.900e-927.22Hypothetical protein PINS_012112 [Pythium insidios... [more]
XP_002605617.15.000e-928.30hypothetical protein BRAFLDRAFT_232831 [Branchiost... [more]
GAX97229.15.000e-927.22Hypothetical protein PINS_005129 [Pythium insidios... [more]
PSC73539.11.900e-841.67protection of telomeres 1 [Micractinium conductrix... [more]
ETI44106.12.500e-827.56hypothetical protein F443_11158 [Phytophthora para... [more]
ETI44107.12.500e-827.56hypothetical protein, variant 1 [Phytophthora para... [more]
ETI44108.12.500e-827.56hypothetical protein, variant 2 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR085ngnoR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004815NSK004815Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00940.1NO17G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641416gene_7790Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g10gene9291Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00940.1NO17G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00940 ID=NO17G00940|Name=NO17G00940|organism=Nannochloropsis oceanica|type=gene|length=1674bp
ATGTTGGCTCCAATGCAGGGCGGCGAACCTGCAGCGCCGTACACAGTAGG
AGCGGCAGGAGCAGCAAACCAGCCGCATCAGCCTCCTCCAGGGCACGCCA
CCCGCATCCCCGACATCGACCTCGCCACTACGCGCGTGGCCGGCGTGCGG
GGAGTCGTACGGGCGAAGCGTGGACTGCGGCAGTGCGTGCAGTCGGGACA
CAGAGGAGGGGCAGGGGGAGGAGGCCAGCAGTTGGGTGGTGCGGTGGACG
ACGGACCACTCGCGGCGCTGGCGACCACCGTGGTTAGCTGCACTTTGCAC
GGCATTGATGGAGCAGGCCTTCCTAATAGCCGAATTCAGGTATTTTTCTA
CGACAAGTGGGCAGATGAGATCGAGGGATGTCTTGAGAACGGGTACAGCT
TGACATTGACCGGGCCGGGATGTATGGTGCGTGCTGTGCCTGCGGGTGAC
CATCCATGTGCCTTGCTTGTGGCCCCGCCCGCGTTATTGTCGGACGTGGC
GAGCTTAGGTGCTCCATCAACGAGGGTGAGGGTGGATTTGAAGCACCCGG
AGGGTGCAGAATTAAATATGGATTTGGATTTGGACCAGAATACGATGGAT
GCGCGGGTAGAAGCTTTCAAGTCGACATGTGCTCGACGCGGTGGAGGGAG
GGGTGGGAAGGAGGAAGGAAGGGTTCAAGGATCAGGAGGGAAAGAAGGAA
ATAGAGGAGGAAGAGGGACGATAGGAGGGGGGGTGCTTATGCCGACGAGA
AAGTATGAATATAGTAAGTGTGGAGAAATAAGGTTGGAGAGAGATTCCGG
GAAGGAGATTAACATTTGGGCAATGGTGGGGTCCTTCGGGCAGCCGCGGG
CGACGAATGGGACGGATTTCTCGCAGAGTTTCTTGTTAGTGGATGAGACG
ACGACGGACGCGGATACGGGGTTGGTGTGTAATATCTTCCGACCGGCAGC
GGACGTGTTCCCTAAGGTGAGGGCAGTAGGAGAATTGTTGAGGTGTCATC
GCGTCAAAGTGAAGGAGTATCAGGGTCGCCCTCAATTGGTAGGGCCTGGG
CAAGTGCATCGATCTCAGTATGTGGTAGCGAGGCGGAAGCCGGGGGCGGG
TCCGGTGGGGTCGGAGGAGGTGTGGGAGGAGGGGAAGTGGGAGCTTGAGG
GGACGTCGGAGAATTTTACGTTTGACGAGTCGGATAAGCTGGCAATTTTA
AGTATATGGCGGTGGAGAGAAATGACGTGTTTGCCGTCTTGGGGATGGAT
AAAGCAGGATTTTAATTTGGGCCCCAAATCCTGTCATCAGATATGGAGGA
GGTTGAGGGGGGAGGAGTGGCAGCCGGCGCTTCTTCCCTCCTTCCTTCCT
CCTGGAGGAGAGACGGAGCAGCCGTCTGTCTCGACGATGATTGACCAGCC
GGGAGATTTTGTGGCAATGTTAATCAATAAGAATATTCATGAAGGCGCCT
TTTGTCTGTGGGATGGCACGGGTTGTACTGCTGCTACTGCTGCTGTTGGG
GTGGGGGTGTCAGACGCAGTCGGTTGGAGTGTGAGAAGGGCGGCATTGAA
AGCGATTGCGGGGCCGAAGTGGGGGGAGTTGAGAGAGATGGTAACCAGGG
ATTTGGTAACGGATTCTAGTATAGGAGGAAGAGGAAGAGGAGAAGGAGGA
GGGGGAGGAGGAGGGGGGGGATAG
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protein sequence of NO17G00940.1

>NO17G00940.1-protein ID=NO17G00940.1-protein|Name=NO17G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MLAPMQGGEPAAPYTVGAAGAANQPHQPPPGHATRIPDIDLATTRVAGVR
GVVRAKRGLRQCVQSGHRGGAGGGGQQLGGAVDDGPLAALATTVVSCTLH
GIDGAGLPNSRIQVFFYDKWADEIEGCLENGYSLTLTGPGCMVRAVPAGD
HPCALLVAPPALLSDVASLGAPSTRVRVDLKHPEGAELNMDLDLDQNTMD
ARVEAFKSTCARRGGGRGGKEEGRVQGSGGKEGNRGGRGTIGGGVLMPTR
KYEYSKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDET
TTDADTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPG
QVHRSQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAIL
SIWRWREMTCLPSWGWIKQDFNLGPKSCHQIWRRLRGEEWQPALLPSFLP
PGGETEQPSVSTMIDQPGDFVAMLINKNIHEGAFCLWDGTGCTAATAAVG
VGVSDAVGWSVRRAALKAIAGPKWGELREMVTRDLVTDSSIGGRGRGEGG
GGGGGGG*
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Synonyms
Publications