NO17G00900, NO17G00900 (gene) Nannochloropsis oceanica

Overview
NameNO17G00900
Unique NameNO17G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2781
Alignment locationchr17:293643..296423 +

Link to JBrowse

Properties
Property NameValue
DescriptionPoly binding cytoplasmic isoform cra_c
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:293643..296423 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: EWM21128.1 (poly binding cytoplasmic isoform cra_c [Nannochloropsis gaditana])

HSP 1 Score: 354.0 bits (907), Expect = 4.300e-94
Identity = 181/224 (80.80%), Postives = 195/224 (87.05%), Query Frame = 0 
Query:   54 LIRYSSPEVAARAIEVLNGQELDNRKLHVREDRSHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVHVKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMKFYSTTGGRR 278
            LI YS+PEVAA+AIE LNGQELDNRKLHVREDRS+LDSAEGVVVFVGNLPWSVTSE+L +LFKEY+P+DVHVKTNMAGRSRGFALVKFTD EVA +AI NLNGY+LEGR IQVRFDRQQ                  GLTDRVT+TNLAWTTEE ELV+LLSKAGTVV VEIQRHAD+GRSKGWAIATF SRDEALNAINTLNKTV+R+R ISMKFYSTTGGRR
Sbjct:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQA--EAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTTGGRR 228
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: EWM22467.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 241.1 bits (614), Expect = 4.100e-60
Identity = 116/263 (44.11%), Postives = 174/263 (66.16%), Query Frame = 0 
Query:    8 TNVVFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDRSHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVHVKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMKFY 271
            +  VF+GNL+W T+ ++L A   + G VL V++QAH+DTGRSKGW L+ + + E A+RA+E+L G+E++ R L+VREDR+ ++  EG VVFVGNLPW +T+  L  +F E+ P DVH+KTNM+GRSRGF L++F  +E A  AI  ++G  ++ R I VR DR                      +D VT  N+ W T +  L   +++AG VV+ +IQRHAD+ RSKGWAI  + + +E  NA+ +L++TVL +R+++++FY
Sbjct:    2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAH-------LEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFY 257
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: CBN79621.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 200.7 bits (509), Expect = 6.100e-48
Identity = 126/306 (41.18%), Postives = 171/306 (55.88%), Query Frame = 0 
Query:   11 VFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDRSHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVHVKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQG------------------------------------------------XXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            VF+GNL+W T+ E+LR F  S+G V+S ++Q+HAD+GRSKGWGL+ Y+ P +A  AIE LN  +L  R +H+R DR  ++++ G  VFVGNLPWS T E L  +F  Y+P D HVKTNMAGRSRGF +++F   E+   AI+ +  Y+++ R IQVR DR+ G                                                XXXXXXXXXXXXXXXXX              T + +L+A    AG VV+  +Q  A SGRSKGW +  + S  E   A+  LN T+L ER ++++
Sbjct:   54 VFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTDDDLLATFQTAGAVVSAHVQ-IAPSGRSKGWGLVKYSSPTETETAVTELNNTMLHERRLTVR 358
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: XP_005852780.1 (hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526] >EKU23049.1 hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.1 bits (466), Expect = 5.900e-43
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 0 
Query:    8 TNVVFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDRSHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVHVKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAEL 211
            +  VF+GNL+W T+ ++L A   + G VL V++QAH+DTGRSKGW L+ + + E A+RA+E+L G+E++ R L+VREDR+ ++  EG VVFVGNLPW +T+  L  +F E+ P DVH+KTNM+GRSRGF L++F  +E A  AI  ++G  ++ R I VR DR                      +D VT  N+ W T +  L
Sbjct:    2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAH-------LEMMGHSPATMEASDTVTCGNIPWHTGDEVL 197
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: XP_003061345.1 (hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla CCMP1545] >EEH54995.1 hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla CCMP1545])

HSP 1 Score: 152.5 bits (384), Expect = 1.900e-33
Identity = 100/292 (34.25%), Postives = 137/292 (46.92%), Query Frame = 0 
Query:    9 NVVFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDRS------------------------HLDSAEGVVVFVGNLPWSVTSESLTDLFKEY-------DPVDVHVKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQG-XXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            N +++GNL WST  + LRA  SS G +  V I      GRS+G+G++ YSS   A  AI  L G  L +R L VRED +                           +AEG   ++GNL W  T+ESL   F++Y         V+  V     GRS+G+ LV F     A+ AIA L+  +L+GR I VR +R  G                  GL  ++ V NL WTT   +L  +  + G VV  +   HAD+GRSKGW    F +R++A  AI   N   L  R + +K
Sbjct:    8 NRLYVGNLPWSTDVDELRAIFSSCGAITHVDI-PKGRQGRSRGYGIVEYSSAAEAQAAIAQLEGHTLGDRNLTVREDNAPTKTANSGGGSXXXXXXXXXNVMGETPAAEGCRCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGL--QIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELESRPMQIK 296
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: XP_009538814.1 (hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae] >EGZ05953.1 hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae])

HSP 1 Score: 138.3 bits (347), Expect = 3.700e-29
Identity = 97/266 (36.47%), Postives = 135/266 (50.75%), Query Frame = 0 
Query:   11 VFIGNLAWSTSEENLRAFASSVGPV-LSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDR-----SHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVH--VKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            V++GNL+WS   ++L+    + GPV L+  ++++   GRSKG G++ Y + E A  AI  LN  EL  RK+ VREDR     S +    G  V+VGNL W+V  + L D  K+   V VH  V     GRS+G  LV++   E A  AIA LN  ELEGRLI VR DR+                   G   ++ V NL W T   +L  L    G V   +I  + D GRS+G+ I  + +  +A  AI  LN   +  R I ++
Sbjct:   91 VYVGNLSWSIKWQDLKDHMQAAGPVELATVLESN---GRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVREDREAQPVSAVKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTV-VHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVR 351
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: XP_008895224.1 (hypothetical protein PPTG_04709 [Phytophthora parasitica INRA-310] >ETI38596.1 hypothetical protein F443_15684 [Phytophthora parasitica P1569] >ETK78860.1 hypothetical protein L915_15224 [Phytophthora parasitica] >ETL32285.1 hypothetical protein L916_15116 [Phytophthora parasitica] >ETM38677.1 hypothetical protein L914_15081 [Phytophthora parasitica] >ETN19370.1 hypothetical protein PPTG_04709 [Phytophthora parasitica INRA-310] >ETO67404.1 hypothetical protein F444_15663 [Phytophthora parasitica P1976] >ETP08503.1 hypothetical protein F441_15503 [Phytophthora parasitica CJ01A1] >ETP36576.1 hypothetical protein F442_15523 [Phytophthora parasitica P10297] >KUF84306.1 putative RNA-binding protein [Phytophthora nicotianae])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 96/265 (36.23%), Postives = 130/265 (49.06%), Query Frame = 0 
Query:   11 VFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDR-----SHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVH--VKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            V++GNL+WS   ++L+    + GPV    +      GRSKG G++ Y++ E A  AI  LN  EL  RK+ VREDR     S      G  V+VGNL W+V  + L D  K+   V VH  V     GRS+G  LV++   E A  AIA LN  ELEGRLI VR DR+                   G   ++ V NL W T   +L  L    G V   +I  + D GRS+G+ I  + +  +A  AI  LN   +  R I ++
Sbjct:   78 VYVGNLSWSIKWQDLKDHMQAAGPVELATVLEW--NGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTSTAKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTV-VHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVR 338
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: XP_008895225.1 (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETI38597.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK78861.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL32286.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM38678.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN19373.1 hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETO67407.1 hypothetical protein, variant 3 [Phytophthora parasitica P1976] >ETP08504.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP36579.1 hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 96/265 (36.23%), Postives = 130/265 (49.06%), Query Frame = 0 
Query:   11 VFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDR-----SHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVH--VKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            V++GNL+WS   ++L+    + GPV    +      GRSKG G++ Y++ E A  AI  LN  EL  RK+ VREDR     S      G  V+VGNL W+V  + L D  K+   V VH  V     GRS+G  LV++   E A  AIA LN  ELEGRLI VR DR+                   G   ++ V NL W T   +L  L    G V   +I  + D GRS+G+ I  + +  +A  AI  LN   +  R I ++
Sbjct:   45 VYVGNLSWSIKWQDLKDHMQAAGPVELATVLEW--NGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTSTAKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTV-VHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVR 305
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: ETL85524.1 (hypothetical protein L917_14946 [Phytophthora parasitica])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 96/265 (36.23%), Postives = 130/265 (49.06%), Query Frame = 0 
Query:   11 VFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDR-----SHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVH--VKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            V++GNL+WS   ++L+    + GPV    +      GRSKG G++ Y++ E A  AI  LN  EL  RK+ VREDR     S      G  V+VGNL W+V  + L D  K+   V VH  V     GRS+G  LV++   E A  AIA LN  ELEGRLI VR DR+                   G   ++ V NL W T   +L  L    G V   +I  + D GRS+G+ I  + +  +A  AI  LN   +  R I ++
Sbjct:   78 VYVGNLSWSIKWQDLKDHMQAAGPVELATVLEW--NGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTSTTKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTV-VHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVR 338
[Close]
BLAST of NO17G00900 vs. NCBI_GenBank
Match: ETL85525.1 (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 96/265 (36.23%), Postives = 130/265 (49.06%), Query Frame = 0 
Query:   11 VFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSKGWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDR-----SHLDSAEGVVVFVGNLPWSVTSESLTDLFKEYDPVDVH--VKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQVRFDRQQGXXXXXXXXXXXXXXXXXGLTDRVTVTNLAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSISMK 269
            V++GNL+WS   ++L+    + GPV    +      GRSKG G++ Y++ E A  AI  LN  EL  RK+ VREDR     S      G  V+VGNL W+V  + L D  K+   V VH  V     GRS+G  LV++   E A  AIA LN  ELEGRLI VR DR+                   G   ++ V NL W T   +L  L    G V   +I  + D GRS+G+ I  + +  +A  AI  LN   +  R I ++
Sbjct:   72 VYVGNLSWSIKWQDLKDHMQAAGPVELATVLEW--NGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTSTTKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTV-VHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVR 332
The following BLAST results are available for this feature:
BLAST of NO17G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21128.14.300e-9480.80poly binding cytoplasmic isoform cra_c [Nannochlor... [more]
EWM22467.14.100e-6044.11rna binding protein [Nannochloropsis gaditana][more]
CBN79621.16.100e-4841.18conserved unknown protein [Ectocarpus siliculosus][more]
XP_005852780.15.900e-4343.84hypothetical protein NGA_0682100 [Nannochloropsis ... [more]
XP_003061345.11.900e-3334.25hypothetical protein MICPUCDRAFT_60999 [Micromonas... [more]
XP_009538814.13.700e-2936.47hypothetical protein PHYSODRAFT_348578 [Phytophtho... [more]
XP_008895224.11.400e-2836.23hypothetical protein PPTG_04709 [Phytophthora para... [more]
XP_008895225.11.400e-2836.23hypothetical protein, variant 3 [Phytophthora para... [more]
ETL85524.11.400e-2836.23hypothetical protein L917_14946 [Phytophthora para... [more]
ETL85525.11.400e-2836.23hypothetical protein, variant 1 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR085ngnoR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004810NSK004810Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00900.1NO17G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00900.2NO17G00900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|168832gene_7795Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g5gene9287Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00900.1NO17G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00900.2NO17G00900.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00900 ID=NO17G00900|Name=NO17G00900|organism=Nannochloropsis oceanica|type=gene|length=2781bp
GGGGTTTCGCTTCGTGAATTTGTCTTCTTGTGCGCGTGCCCGTCATGCTC
AAATCGTGCATGAAATTCGGGCTTTTAACCTTTCCACAAAGCTGTACCCA
TTTTCCAGTTGTGATGTTTTCTTCCTCCAAAAGGGATGCCAAGGCCTCCG
CTTTTCAACCCACCACGATCACAGCCTAGTTGTGACCCAGTGCTTGCTTG
CTTGCTTTCCGCATGGGCCATTCTTTAAGATCAGCGCACTTTCGCTCTTC
CACCCTCGTCTCCGGTGGCGCAATGGTGAACGCTGACAAAGCAAAGAAAC
ACGCACACCGAAGACTTACACATATTCTTGCCACCAGCGACTACTACGGT
CCGCCAAATATTGTGCCGTGGTGTATGCTTCGCTGGTGTCTCCTTGGGCT
CGAACTAGCTTACATACCCCGGGGCAGCTCGAGAAAGAAGAACTCTCCGA
CTCCTCCTGCCCATGCATCGCTACACGAGAATCATCGAGTTGAGAGGCAG
CGAGCGGTGGAGAGAAGTGGTCCCGTCCAAGAGAACTCACCAGGCTTGCC
ACGCGCGCTCATGAGTGATAATTTGGAGGTGTTTTGACGCACTTCATGTT
CAATCGATAGCCTTGCTACTCGACCACATTATTGGCCTTCATGCAGCATG
GCTTTGGCCGTGCGTCTCCTGCCCCGACAAATCCCCAATCCAGCAGACAG
GAGAGCTGTGTCCGCGAGAGACGGAGTGTGTGAATGTTCAGCTTTCCGAT
GTTTTCTCATGCTCTGGCCCTCCAAACCACCCACAAGCAGCAGCAGAGCG
GCGACCAAGTCGAGGAGGAGCTGTAGGAATCTACCATGGCTGgtaagtgg
gtggatgggcgtgggcgctgggattggcggggttttgtcctcttagaaga
tggagaagagcgcttactgaaggcagcacgcctggtgcgtgtaccgtcag
atgacaactgccgcctctcgagtcgcgcgggtcggggtcacggggcatga
tacgcaaggttgcatggggtgtcgtacttggccggcccaaagcgggggaa
aacgagcggctgagagatacgcgggcgtggacgggtgtagttttccgagg
atcgtcctcttgatatgcacgctgggttgctcgtctttgtatatcacata
gcactggtcgccaccactctcacaaccaccacactgacacgtccaaaaca
aaaacttatccgtctactcgacatcagCAGCAGGGAGGGCGACGAATGTT
GTTTTCATCGGGAACTTGGCATGGAGCACGTCGGAAGAGAACCTGCGGGC
TTTCGCCTCCTCAGTGGGACCTGTCCTCTCTGTGCAAATTCAGGCACATG
CCGACACGGGCCGCTCCAAGGGATGGGGGTGAGTAAGAGAGTCGGTGGGC
GTGCTGGGGGTATGCTGACGGCATGCTTCCATTATAGTCATATATACACC
ATACCTACTCTTGTCAGTAGTATGCTTGGGCAGTCATATTAAGACGAGTG
CGTCCGCATCGAGCTTTTGAACTCGGTATTCCTAGTCATGTGCTCTCAAA
TTTCTGGGGAAAACCATCGTGCAAGGGGTGCTTGCCTTCTGTATTCGCTC
CCTCCCTTCCTCCAGCCAATCCCTCATTTCTTTGATTTTGTTTGCATCTC
CTGTCACGTTTGCTTGTCAGCTCTCCCTATTTTCCCCATCTAGATCCTGC
TGCACCTGCCTGACTTTCTGAGGTACATCTACATGTCTCCGGACTATGCC
GACATGTCTGATGCACGTTCCCTTTCTTTACCCCCCTTCCCCTACCTTCT
TTCCTGTCGCAGCCAAATCTGCAACAGCTCCCCGAAATGACCTTCCGTGC
GATCGAAGCTCTAAATGATAAAGGGATAGACAAGCGCAAACACAGGAAGA
TCACTCTCACCCTCCCTCTGTCCTTCCATCCGTCCCTCCCCTTCCTCAGG
CTAATACGCTACAGCTCCCCGGAAGTGGCCGCGCGTGCGATCGAGGTCCT
GAATGGACAGGAGCTGGACAACCGCAAGCTGCACGTTCGCGAGGACCGCT
CTCATCTTGATTCGGCGGAGGGTGTGGTGGTGTTTGTCGGGAATCTGCCG
TGGTCCGTGACGAGCGAATCCCTGACTGATCTCTTCAAAGAGTACGACCC
GGTCGACGTCCACGTCAAGACGAATATGGCGGGGAGGAGCAGgtaggaag
agacagacggagacacgctgaccgtggtggaaattctcacatgtctcaac
ggccatccaacggccatcagatgacgccgttaccctccctcacggtcccc
ttcctctcttgtcccctccttccttccttcctccctccctcacagGGGTT
TCGCCCTGGTGAAGTTTACAGACACCGAGGTCGCAGATCTGGCAATCGCT
AATCTCAATGGGTATGAGCTGGAGGGACGGCTCATCCAGGTCCGCTTTGA
TAGGCAACAGGGCGAGGGAGGGGAGGGTGGAGCTGGGGCTGACGCGAACG
GGGGAGGGGTGGGGGGGTTGACCGACCGTGTGACGGTGACGAACTTGGCG
TGGACCACGGAGGAGGCGGAGTTGGTGGCGCTGCTGTCAAAGGCAGGCAC
CGTGGTGAACGTGGAGATACAGCGGCATGCGGACTCGGGGCGAAGCAAGG
GATGGGCGATTGCCACGTTTGGGAGTCGGGATGAGGCGTTGAATGCGATC
AACACGCTGAATAAAACGGTGCTTCGGGAGAGGTCTATTTCGATGAAGTT
CTACAGCACTACTGGTGGTCGTCGGAATTGA
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protein sequence of NO17G00900.1

>NO17G00900.1-protein ID=NO17G00900.1-protein|Name=NO17G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MAAAGRATNVVFIGNLAWSTSEENLRAFASSVGPVLSVQIQAHADTGRSK
GWGLIRYSSPEVAARAIEVLNGQELDNRKLHVREDRSHLDSAEGVVVFVG
NLPWSVTSESLTDLFKEYDPVDVHVKTNMAGRSRGFALVKFTDTEVADLA
IANLNGYELEGRLIQVRFDRQQGEGGEGGAGADANGGGVGGLTDRVTVTN
LAWTTEEAELVALLSKAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALN
AINTLNKTVLRERSISMKFYSTTGGRRN*
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protein sequence of NO17G00900.2

>NO17G00900.2-protein ID=NO17G00900.2-protein|Name=NO17G00900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MTFRAIEALNDKGIDKRKHRKITLTLPLSFHPSLPFLRLIRYSSPEVAAR
AIEVLNGQELDNRKLHVREDRSHLDSAEGVVVFVGNLPWSVTSESLTDLF
KEYDPVDVHVKTNMAGRSRGFALVKFTDTEVADLAIANLNGYELEGRLIQ
VRFDRQQGEGGEGGAGADANGGGVGGLTDRVTVTNLAWTTEEAELVALLS
KAGTVVNVEIQRHADSGRSKGWAIATFGSRDEALNAINTLNKTVLRERSI
SMKFYSTTGGRRN*
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Synonyms
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