NO17G00890, NO17G00890 (gene) Nannochloropsis oceanica

Overview
NameNO17G00890
Unique NameNO17G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3003
Alignment locationchr17:288037..291039 -

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Properties
Property NameValue
DescriptionZinc finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:288037..291039 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR011016Znf_RING-CH
IPR001841Znf_RING
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: XP_010938358.1 (PREDICTED: RING-H2 finger protein ATL2 [Elaeis guineensis])

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0 
Query:  729 CAICLMDYVEEEMLRELP-CGHRFHVQCVDQWFRSASSLSCPMCKARVTAPPSP 782
            CA+CL ++ E E +R LP CGHRFH++C+D WFRS +  +CP+C+A V A P P
Sbjct:  115 CAVCLAEFEEGEKVRSLPRCGHRFHIECIDMWFRSHA--TCPLCRAAVEAAPPP 166
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: KXS19588.1 (hypothetical protein M427DRAFT_453886 [Gonapodya prolifera JEL478])

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-8
Identity = 82/341 (24.05%), Postives = 131/341 (38.42%), Query Frame = 0 
Query:  157 STPAPPNRQSHGMTV----WKDTMLVHGGVGANRVGLSDLWAFDLTTHVWQNVSQKVTPADPVYYRAAHSFFAREEAGAGEGEAPTLGLYVWGGR--------EMPEGDS---------ALGTTKATNQLLK--------FVMAAPME--GGGEDWKEGGHWIPVATTSAETADPAFSAG-----------PVGRSDHTGILFKNPATGKEHFLVYGGRLVEPSGVAVAAGSNSXXXXXXXXXXXGGQMAREVYGDMWSLDLETMVWTLLYAGGEKDGGPPARFLHASSVLIEEEGGEEVAKIVVFGGLTFFGN-SLFALDDVWEFSIKDRTWRQQKMEVA 455
            S  +PP R  H +       KD ++V  G  +    L D W + + +  W+ +S +   A P     A    A +E   G G A  +G      R         M + DS             T +++++L         F M++ +    G       G   P   T+A      F  G           P+ R  H+  ++++P  GK+H +VYGGR VE  G++                        +V  D+W   ++ +     Y   E+   PPAR+LH S +        E + +++ GG    GN S   LDD+W F++  RTW Q + E A
Sbjct:   20 SQSSPPPRSGHRVLTRKRDGKDELIVLWGGSSGMELLKDAWVYSMDSSTWRKISFEGANAPP---GLADFALAVDE---GTGGACAIGGLTHDKRMSNVLYEITMDDTDSISVHPICPRPSDPTTSSDEILANKSHTAPYFSMSSTLNFASGPRRLISFGGLYPDGHTTASLHSYDFEKGDWDELKCYTGVPLHREAHSAAVWRDP-LGKQHLVVYGGRSVEREGIS------------------------DVLNDLWLCHIDEIPIKWEYVNVEE--APPARYLHGSYL--------EDSNLIIHGGWGCDGNGSEVTLDDLWAFNLDTRTWSQLECENA 319
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: EMS54362.1 (RING-H2 finger protein ATL80 [Triticum urartu])

HSP 1 Score: 70.5 bits (171), Expect = 3.400e-8
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 0 
Query:  716 GRESTPADDNRDMCAICLMDYVEEEMLRELP-CGHRFHVQCVDQWFRSASSLSCPMCKARVTAPP 780
            G   TPA  +   CAICL +Y+E E LR LP CGH FHV CVD W R+ +  +CP C+A + A P
Sbjct:  108 GPSPTPATGSSSECAICLAEYMEGEALRVLPRCGHGFHVACVDAWLRTCA--TCPSCRAPIVATP 170
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: NP_035613.2 (E3 ubiquitin-protein ligase ZNRF4 precursor [Mus musculus] >Q9DAH2.1 RecName: Full=E3 ubiquitin-protein ligase ZNRF4; AltName: Full=RING-type E3 ubiquitin transferase ZNRF4; AltName: Full=Sperizin; AltName: Full=Zinc/RING finger protein 4; Flags: Precursor >BAB24269.1 unnamed protein product [Mus musculus] >AAI40987.1 Zinc and ring finger 4 [Mus musculus])

HSP 1 Score: 70.1 bits (170), Expect = 4.400e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  207 DLCAICLDDYEEGERLKILPCAHAYHCRCIDPWFSRAAQRSCPLCKQSVAS 257
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: EDL38170.1 (zinc and ring finger 4, partial [Mus musculus])

HSP 1 Score: 70.1 bits (170), Expect = 4.400e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  268 DLCAICLDDYEEGERLKILPCAHAYHCRCIDPWFSRAAQRSCPLCKQSVAS 318
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: OBS74694.1 (hypothetical protein A6R68_14772 [Neotoma lepida])

HSP 1 Score: 70.1 bits (170), Expect = 4.400e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  207 DLCAICLDDYEEGEQLKILPCAHAYHCRCIDPWFSRATRRSCPLCKQSVAS 257
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: XP_021005315.1 (E3 ubiquitin-protein ligase ZNRF4 [Mus caroli])

HSP 1 Score: 70.1 bits (170), Expect = 4.400e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  207 DLCAICLDDYEEGERLKILPCAHAYHCRCIDPWFSRAAQRSCPLCKQSVAS 257
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: NP_001020049.1 (E3 ubiquitin-protein ligase ZNRF4 precursor [Rattus norvegicus] >AAH98025.1 Zinc and ring finger 4 [Rattus norvegicus] >EDL83632.1 zinc and ring finger 4 [Rattus norvegicus])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  207 DLCAICLDDYEEGERLKILPCAHAYHCRCIDPWFSRAARRSCPLCKQSVAS 257
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: XP_006982318.1 (PREDICTED: E3 ubiquitin-protein ligase ZNRF4 [Peromyscus maniculatus bairdii])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  208 DLCAICLDDYEEGERLKILPCAHAYHCRCIDPWFSRAARRSCPLCKQSVAS 258
[Close]
BLAST of NO17G00890 vs. NCBI_GenBank
Match: XP_021488576.1 (E3 ubiquitin-protein ligase ZNRF4 [Meriones unguiculatus])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  727 DMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRSASSLSCPMCKARVTA 778
            D+CAICL DY E E L+ LPC H +H +C+D WF  A+  SCP+CK  V +
Sbjct:  207 DLCAICLDDYQEGERLKILPCAHAYHCRCIDPWFSRAARRSCPLCKQSVAS 257
The following BLAST results are available for this feature:
BLAST of NO17G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_010938358.12.600e-853.70PREDICTED: RING-H2 finger protein ATL2 [Elaeis gui... [more]
KXS19588.12.600e-824.05hypothetical protein M427DRAFT_453886 [Gonapodya p... [more]
EMS54362.13.400e-850.77RING-H2 finger protein ATL80 [Triticum urartu][more]
NP_035613.24.400e-852.94E3 ubiquitin-protein ligase ZNRF4 precursor [Mus m... [more]
EDL38170.14.400e-852.94zinc and ring finger 4, partial [Mus musculus][more]
OBS74694.14.400e-852.94hypothetical protein A6R68_14772 [Neotoma lepida][more]
XP_021005315.14.400e-852.94E3 ubiquitin-protein ligase ZNRF4 [Mus caroli][more]
NP_001020049.15.800e-852.94E3 ubiquitin-protein ligase ZNRF4 precursor [Rattu... [more]
XP_006982318.15.800e-852.94PREDICTED: E3 ubiquitin-protein ligase ZNRF4 [Pero... [more]
XP_021488576.15.800e-852.94E3 ubiquitin-protein ligase ZNRF4 [Meriones unguic... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR085ngnoR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004808NSK004808Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00890.1NO17G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600066gene_7797Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g3gene9285Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00890.1NO17G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00890 ID=NO17G00890|Name=NO17G00890|organism=Nannochloropsis oceanica|type=gene|length=3003bp
ATGCTCCTTGAACAGGACGTGGACGACTTTGTTTCAGCCATGCCTCTCTT
CGCCATGTACATGGTGTCACGAATGAGATCCCTCTTTTTCCCGGTGCCCT
TGCTGCTTTTCGTCGATTGCCTCCCAGGCCTACACTCCTTGAATCATCAG
CACTTTCTGACAATCCCCATATTTCACAACAGGCGAAAGCACCTAAACAA
GACAGCCGGCGGCAGCAGCCATGGGGTCGACTTCGAGATCATAATCTCTC
CCCATTTTTTAACCAGCAGTCAACCAGCCCGTCACGCACCATCAATGCGG
CAGGAACACCGCAGCCCCCCCGTCAACAGGCGGGCCTCTATCCCTTCCCC
CTGCCACCTCCCCCTCCTCCTTCTCCTCTTCCTCGCCTCCAACCCCCTCC
CGACCTCCGGCTTGGCCGAATGGCAAAAACTATGGGCTGCTCCCTCCCCC
AATCCGGGCACCAATACCAGTACGCCCGCGCCCCCGAATAGGCAATCACA
CGGGATGACAGTGTGGAAAGACACCATGCTGGTCCACGGTGGCGTAGGCG
CAAACAGGGTCGGCCTCAGCGATCTGTGGGCATTTGACTTGACCACACAT
GTCTGGCAGAATGTATCGCAGAAAGTCACACCTGCCGATCCAGTTTACTA
CAGAGCAGCGCATTCATTTTTCGCCCGGGAGGAGGCAGGGGCGGGGGAAG
GGGAAGCTCCGACATTGGGCCTATATGTATGGGGGGGACGAGAGATGCCG
GAGGGGGACTCAGCGCTAGGAACAACGAAAGCAACGAACCAGCTACTGAA
ATTTGTGATGGCAGCTCCGATGGAAGGGGGGGGAGAAGACTGGAAAGAGG
GCGGGCATTGGATACCGGTAGCGACGACAAGCGCCGAAACGGCCGACCCG
GCCTTTTCTGCAGGGCCTGTAGGAAGGAGTGATCACACGGGGATACTGTT
CAAAAACCCAGCAACGGGCAAAGAACACTTCCTGGTCTATGGTGGTAGGT
TGGTAGAGCCATCAGGCGTGGCAGTCGCTGCTGGCAGTAATAGTACAAGC
AGCCGCAGCAGCCGCAGCAAAGGGAGTGGGGGTCAGATGGCCAGGGAGGT
TTATGGTGATATGTGGAGCTTAGATTTGGAGACGATGGTGTGGACATTAT
TATATGCTGGAGGGGAGAAAGATGGAGGGCCACCGGCGAGGTTTCTGCAC
GCATCGTCGGTATTGATTGAGGAGGAAGGGGGGGAGGAAGTGGCGAAGAT
TGTGGTGTTTGGGGGATTGACGTTTTTCGGGAACTCGCTATTTGCGCTCG
ATGATGTGTGGGAGTTTTCAATCAAAGACCGGACGTGGAGGCAGCAGAAG
ATGGAGGTGGCCCTGCTAAGGAGCGCCCTACCCATGCTCAAAGCTCCTCT
AGCTGTTCCTGCCGCCGCTGCTGCTGACGGTGCGGCGGCCGGCCCTGCTG
CTCCTCCAACTAGTGTTCAGGTTTTGTATGCATTTGCGGGATATGTAATT
TACACCTCGGCAGGTCTGGCTGTTGTCTACAACGATTTGTTAGTCTGGGA
TCCCAGGAAACCGTTCTGGCAGAAATTCGTGAATCCAAACGGCAAGCCTG
CGCCTGCCCCGAGATTCGACCATCGTGGAGTTGTCTGGAGAAAGGAGGGG
AGTAATGAGGGGGGTGTGCTAGTGTTCTACGGGGGCAGTTATCAGGATGT
GAATGATGTGGCCGACGTCTGGATGATCGATGCCGGAGGGATGGAGGAAG
GGCAGTTGACCAAGGCGCCGGCGGAGGGGCTGAACGCCCTTTTTGCAGGA
CGGATGATGTTCATTTTGTCGAGCTTGGTACTTATGTGTATGTGCTCAGC
ATTCTTGTCGTTGAGAATGAGAAGACAGATGTTGCTGAGGGCACGAGGGG
CGGCGGGGGAGGCAGTGGGCGAGGGAGGGATGGGGCAGGCGGAGGCGAGG
GGGAGGGAGGAGAGGGCAAGAGTGACGGAAGAGGCCCTGAGGTCGTTGCC
GGTTGTGCAGTATGGAAGGAGTGATGGTAGCGCCGGTGGAGAGTATGGAG
GAGCAGGAGCAGGAGCAGTGGCAGGGGCTGGAGGAGAAAGAGGAGGAGGG
GTGGATAGTGGACCGGCATCAATGGAGGGAGGAAGGGCGGAAAGGGGCAG
AGAGTCAACACCAGCGGACGACAACAGAGACATGTGCGCCATCTGTTTGA
TGGACTATGTGGAGGAGGAGATGTTGAGGGAGCTGCCGTGCGGGCATCGT
TTCCACGTGCAATGCGTCGATCAATGGTTCCGGTCTGCCAGCAGCCTCTC
GTGCCCCATGTGCAAGGCCCGGGTCACCGCTCCTCCCTCTCCCTCGCTCA
TCACTTCCCCCTCCTCCTCCACCTCGTCAATCACGGGCTTATACCCCTCT
TCTACCGCCACTACGGGTGCTACCACTACTAGTACCACCGCTCACGCGTT
CTCTTCTCTCCTGTCAAGCCTTAATCCGTTCCGAGAATCAAGGATACAAC
ACCGTGTTTCCTCTTCGACCACTACGAGTACTCCTGGTGCTGACCACCGC
AACAGCAGCACGGCCAGCATGACAGACAGCTCCACCGCGCCCGTCCTCCC
CACCTCGTCCTTCCCCTCCTCGTCCTCCGCGCCTATTTCTATTGCTGCTG
TCGGCGCGATCCCTGGTGCTGCCGCTGCTGCCGCTGAAGGAGAGAGTGGT
CATGCGACGGGTTCGTACCAGCCACCTGACAGCTTGATTCCGTACCACGA
CATGTCCCTTGTCGAGATGCAGCAACCTGTTGCCTCCTCCCTCCCGTCCT
CGTCCTCGCCCTCGTTCTCATCCTCCCTGCCTTCGTCGGCCTCGCCAAGG
CGAAGGCAAGAGCAATCACCACATCCTTCTTCCTCCCCGTCAGCAGCAGC
TGCAGCAGCGGCAGCAAGAAGAAATCTAGGAGAGGAAGGATCTGGTGGAG
GAGGAGGAGGAGGAGGGAGAGGCGGTCCACTAGGAGGAGCCGATCTTGTG
TAA
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protein sequence of NO17G00890.1

>NO17G00890.1-protein ID=NO17G00890.1-protein|Name=NO17G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1001bp
MLLEQDVDDFVSAMPLFAMYMVSRMRSLFFPVPLLLFVDCLPGLHSLNHQ
HFLTIPIFHNRRKHLNKTAGGSSHGVDFEIIISPHFLTSSQPARHAPSMR
QEHRSPPVNRRASIPSPCHLPLLLLLFLASNPLPTSGLAEWQKLWAAPSP
NPGTNTSTPAPPNRQSHGMTVWKDTMLVHGGVGANRVGLSDLWAFDLTTH
VWQNVSQKVTPADPVYYRAAHSFFAREEAGAGEGEAPTLGLYVWGGREMP
EGDSALGTTKATNQLLKFVMAAPMEGGGEDWKEGGHWIPVATTSAETADP
AFSAGPVGRSDHTGILFKNPATGKEHFLVYGGRLVEPSGVAVAAGSNSTS
SRSSRSKGSGGQMAREVYGDMWSLDLETMVWTLLYAGGEKDGGPPARFLH
ASSVLIEEEGGEEVAKIVVFGGLTFFGNSLFALDDVWEFSIKDRTWRQQK
MEVALLRSALPMLKAPLAVPAAAAADGAAAGPAAPPTSVQVLYAFAGYVI
YTSAGLAVVYNDLLVWDPRKPFWQKFVNPNGKPAPAPRFDHRGVVWRKEG
SNEGGVLVFYGGSYQDVNDVADVWMIDAGGMEEGQLTKAPAEGLNALFAG
RMMFILSSLVLMCMCSAFLSLRMRRQMLLRARGAAGEAVGEGGMGQAEAR
GREERARVTEEALRSLPVVQYGRSDGSAGGEYGGAGAGAVAGAGGERGGG
VDSGPASMEGGRAERGRESTPADDNRDMCAICLMDYVEEEMLRELPCGHR
FHVQCVDQWFRSASSLSCPMCKARVTAPPSPSLITSPSSSTSSITGLYPS
STATTGATTTSTTAHAFSSLLSSLNPFRESRIQHRVSSSTTTSTPGADHR
NSSTASMTDSSTAPVLPTSSFPSSSSAPISIAAVGAIPGAAAAAAEGESG
HATGSYQPPDSLIPYHDMSLVEMQQPVASSLPSSSSPSFSSSLPSSASPR
RRQEQSPHPSSSPSAAAAAAAARRNLGEEGSGGGGGGGGRGGPLGGADLV
*
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Synonyms
Publications