NO17G00820, NO17G00820 (gene) Nannochloropsis oceanica

Overview
NameNO17G00820
Unique NameNO17G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr17:273287..274786 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:273287..274786 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
Homology
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BLAST of NO17G00820 vs. NCBI_GenBank
Match: EWM21149.1 (hypothetical protein Naga_100319g3 [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 2.100e-99
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0 
Query:  147 QQSQLRLLPFQPYAGIPPFNQLRDTNLQDWPPGRGLTFIRPCPSGTSSLEKLGMLKNCPQILAYIQSFSGADWMEATFTPHPCIRITATTQMPGGKSTAEAILRLSDEMILQWLHRFDPQVPIWAMFVCPAMLSGLMVGKQALNLKKIEEISMARVWAAPRDVEAQYVSFFICSNNYEATREAYAMLESRAHNQ 341
            QQ+Q R LPFQPYAGIPPFNQLR+TNLQDWPP RGLTFIRPCPSGTSSLEKL MLKNCPQILAYIQSFSGADWMEATF+P PCIR+TATTQMPGGK+TAEAILRLSDEM+LQWLHRFDPQ+PIWAMFVCPAMLSGLMVGKQA+NLKKIEE S ARVWAAPRD EAQYVSFFICSNNYEATR AYA+LE+RAHNQ
Sbjct:  161 QQTQQRTLPFQPYAGIPPFNQLRETNLQDWPPDRGLTFIRPCPSGTSSLEKLSMLKNCPQILAYIQSFSGADWMEATFSPQPCIRLTATTQMPGGKATAEAILRLSDEMVLQWLHRFDPQMPIWAMFVCPAMLSGLMVGKQAVNLKKIEESSSARVWAAPRDSEAQYVSFFICSNNYEATRSAYALLEARAHNQ 354
The following BLAST results are available for this feature:
BLAST of NO17G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21149.12.100e-9990.21hypothetical protein Naga_100319g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004804NSK004804Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00820.1NO17G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600087gene_7803Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100319g3gene9280Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00820.1NO17G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00820 ID=NO17G00820|Name=NO17G00820|organism=Nannochloropsis oceanica|type=gene|length=1500bp
ATGGTCGTCGTAGCCAACATGAACGCGGATGGAAAGAGTATTGGCAGCAG
CAGCAGCGCGGGCGTCGTTGCAGTTCCCAAGGCGGTGGAAGAGGCATTTG
GGGTTGAGGACGAGGAGATCCCGACTACCACCGCCACCGGAAGCAAGATG
GCCACGATCACGGCTACGACACAACAAGCCAACACGTCGAGCAAGAAAAA
GAAGAAGGGTCAGCAGCAGCAGCAGCAGCTGCAGCTGCAAGGCACGGCGG
GCTCGGACACCAACAAAGAGAAAGCCAAAGCCGTCGCAGCAAAAGCGCCT
CCGGAGGACAGCTGCAATAAGACGGACAAGAAGGATACCACTGCTGCCAC
CGCTGCCGCCACCACTAGCAACGTCGTCAAGCCAGTACAGGCCTCACTAG
TGTCACAGAAGTCATCCCATACTTCTTCTTCACAACCCCAGCAATCCCAG
CTGCGCCTCCTGCCGTTCCAGCCTTACGCCGGCATACCTCCCTTCAACCA
GCTCCGCGACACAAACCTGCAAGACTGGCCTCCGGGACGTGGATTAACCT
TCATTCGTCCTTGCCCTAGCGGCACGTCCTCCCTAGAGAAGCTGGGAATG
CTCAAAAACTGCCCTCAGATTCTGGCGTACATCCAGTCTTTTTCCGGGGC
GGATTGGATGGAGGCGACCTTTACCCCGCACCCTTGCATCCGGATAACGG
CCACGACGCAGATGCCGGGGGGTAAATCAACAGCGGAAGCAATTCTGAGG
TTATCCGATGAAATGATTTTGCAATGGTTGCATCGGTTTGATCCGCAAGT
GCCGATTTGGGCCATGTTTGTGTGCCCTGCAATGCTTTCCGGATTAATGG
TGGGAAAGCAGGCGTTGAATCTTAAGAAAATCGAGGAGATTTCGATGGCC
AGGGTATGGGCGGCACCGAGGGATGTGGAAGCACAGTACGTGAGCTTTTT
CATTTGTAGTAATAATTATGAGGCGACCCGTGAGGCCTATGCAATGTTAG
AGAGCCGTGCGCACAACCAGATGGAGATGGCCATGGCTACGAATATGCAT
CAGCAGCAGCACATGCCGGCCACGAAGGCCACAGCGGGTCCCGTGCGCAT
TCAGAAGCCCTCTTCCGCTACCTCTTCCTCCTCTGTCGCAGCGACGTCTG
GAGACATAGCAAAGAAAAACGTCATGACGCCAGTCTCGTCCCCTTCTTCC
ATTTCCTCCTGCTCCGATGACGATTCCTCGTCGACTGACACCGAAGCCTC
TACGCAGCAGCCCTCAAGGGATAGTACTCCACCTGCCACGCATGCCACCA
AGAAGCCGACCCACTCGTCCTCTGCGTCCTCCTCCTCATCCCTGGCCTCT
ACGACTACGACAAAGGGTAGCGACAGCCGCAGCACCAGCAGCACCAGCAC
CAGCAGTGATGAGAATATTAAGTCGGATGAAGTTACAAGCGGCGTGAAGG
CTAACCATCAGAGCGCAACTCCTACAAAGAAAGAGTTGGATAAGAAGTAG
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protein sequence of NO17G00820.1

>NO17G00820.1-protein ID=NO17G00820.1-protein|Name=NO17G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MVVVANMNADGKSIGSSSSAGVVAVPKAVEEAFGVEDEEIPTTTATGSKM
ATITATTQQANTSSKKKKKGQQQQQQLQLQGTAGSDTNKEKAKAVAAKAP
PEDSCNKTDKKDTTAATAAATTSNVVKPVQASLVSQKSSHTSSSQPQQSQ
LRLLPFQPYAGIPPFNQLRDTNLQDWPPGRGLTFIRPCPSGTSSLEKLGM
LKNCPQILAYIQSFSGADWMEATFTPHPCIRITATTQMPGGKSTAEAILR
LSDEMILQWLHRFDPQVPIWAMFVCPAMLSGLMVGKQALNLKKIEEISMA
RVWAAPRDVEAQYVSFFICSNNYEATREAYAMLESRAHNQMEMAMATNMH
QQQHMPATKATAGPVRIQKPSSATSSSSVAATSGDIAKKNVMTPVSSPSS
ISSCSDDDSSSTDTEASTQQPSRDSTPPATHATKKPTHSSSASSSSSLAS
TTTTKGSDSRSTSSTSTSSDENIKSDEVTSGVKANHQSATPTKKELDKK*
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Synonyms
Publications