NO17G00800, NO17G00800 (gene) Nannochloropsis oceanica

Overview
NameNO17G00800
Unique NameNO17G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1256
Alignment locationchr17:269271..270526 -

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Properties
Property NameValue
DescriptionSuccinate dehydrogenase cytochrome b subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:269271..270526 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR000701Succ_DH_Fumarate_Rdtase_TM-su
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO17G00800 vs. NCBI_GenBank
Match: EWM21144.1 (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana])

HSP 1 Score: 231.1 bits (588), Expect = 2.800e-57
Identity = 125/178 (70.22%), Postives = 142/178 (79.78%), Query Frame = 0
Query:    1 MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFVTLSAS 179
            M LRTA A S KAV   +       +      Q++ +    STA KE+YTERQARTGRPVSPHVTIYKFPI ALTSI+TRVTGG LTVGLTGISL+ALGG DVP LMSSLGNSMVGVPAKVLF FPLI+HYGSGLRH+ WD+NPN L+N+GV+EASYILLG+TVA SL +GFVTL+ S
Sbjct:    1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVL-QAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISLVSGFVTLAPS 177          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: EWM21145.1 (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 2.400e-40
Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 0
Query:    1 MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYL 140
            M LRTA A S KAV   +       +      Q++ +    STA KE+YTERQARTGRPVSPHVTIYKFPI ALTSI+TRVTGG LTVGLTGISL+ALGG DVP LMSSLGNSMVGVPAKVLF FPLI+HYGSGLRH++
Sbjct:    1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVL-QAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFV 138          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: CBN78408.1 (SDH3, succinate dehydrogenase subunit 3 [Ectocarpus siliculosus])

HSP 1 Score: 134.0 bits (336), Expect = 4.700e-28
Identity = 74/127 (58.27%), Postives = 85/127 (66.93%), Query Frame = 0
Query:   47 ESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174
            ESYT RQARTGRPVSPHVTIY FP  AL+SIA RVTG AL  GL GIS   L G D   LMS+LG+S VG   K+  SFPL+YHY   +RH +WD+ P  L   GV++ SY LLG + A SL    V
Sbjct:   50 ESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: GAX17880.1 (succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [Fistulifera solaris])

HSP 1 Score: 119.8 bits (299), Expect = 9.100e-24
Identity = 72/168 (42.86%), Postives = 100/168 (59.52%), Query Frame = 0
Query:   10 SCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVAL--GGGDVPALMSSLGNS--MVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174
            SCK +     QN    ++  M    V  K S     + +Y++R   TGRPVSPHVT+Y FP  AL+SI  RVTG AL+VG  G+ LV L  G G   +LM ++G+   +V   AK   SFP++YHY + +RH++WD  P ML+N+ V ++SY L GA+ A S A  F+
Sbjct:    9 SCKML-QKFTQNNNVLRSQMMRSMTVLSKQSGEEYKQLNYSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAISGALMFI 175          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: XP_002293940.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88949.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 115.9 bits (289), Expect = 1.300e-22
Identity = 70/136 (51.47%), Postives = 87/136 (63.97%), Query Frame = 0
Query:   46 KESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPAL--MSSLGN-SMVG-----VPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174
            KE+Y+ R A+T RPVSPHVTIY FP+ AL+SIATRVTG  L+ G  G+ +V + GG   AL  M  +G+  MVG       AK   +FP  YHY  GLRH +WD++P ML N  V +ASY LLGA+V  S  A  V
Sbjct:   56 KENYSARMAKTRRPVSPHVTIYSFPVCALSSIATRVTGCILSFGAAGLGIVEIFGGSGAALSTMQCIGSGEMVGGALFVAGAKFSVAFPFAYHYLGGLRHLVWDNSPEMLTNVDVEKASYGLLGASVLLSSVAAVV 191          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: GAX24530.1 (hypothetical protein FisN_18Lh084 [Fistulifera solaris])

HSP 1 Score: 115.9 bits (289), Expect = 1.300e-22
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 0
Query:   48 SYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVAL--GGGDVPALMSSLGNS--MVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174
            +Y++R    GRPVSPHVT+Y FP  AL+SI  RVTG AL+VG  G+ LV L  G G   +LM ++G+   +V   AK   SFP++YHY + +RH++WD  P ML+N+ V ++SY L GA+ A S A  F+
Sbjct:   45 NYSKRMKEMGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGLVVAAAAKFAVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAISGALIFI 174          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: CCI47384.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 115.2 bits (287), Expect = 2.300e-22
Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = 0
Query:   39 LSTSTAGK-ESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPA-----KVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFVTL 176
            +STSTA    SYT+RQAR GRPVSPHV IY  PI A++SI  R+TG  L+VG    S  AL GGDVP+L+ S   + V +PA     K+L +FP+ YH  + +RH +WD  P +++N+    +SY L  A+V  +L+A   T+
Sbjct:   23 MSTSTASSPSSYTQRQARLGRPVSPHVQIYAMPITAVSSITNRITGVGLSVGFLAASSYALVGGDVPSLIYS---AQVSIPAFTPLSKLLVAFPISYHTLAAIRHMVWDKRPELINNKDSPRSSYALFSASVVIALSASMYTI 162          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: CCA17177.1 (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 113.2 bits (282), Expect = 8.600e-22
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 0
Query:   39 LSTS-TAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPA-----KVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFVTL 176
            +STS T+ + SY++RQAR GRPVSPHV IY  PI A++SI  RVTG  L+VG    S  AL GGDVP+L+ S   + V +PA     K+  +FPL YH  + +RH  WD  P +++N+    +SY L GA+   +LAA   T+
Sbjct:   23 MSTSVTSNQPSYSQRQARLGRPVSPHVQIYAMPITAVSSITNRVTGVGLSVGFVAASSYALVGGDVPSLIHS---AQVSIPAFTPLSKLFVAFPLSYHTLAAIRHMAWDKRPELINNKDSPTSSYALFGASALIALAASMYTI 162          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: OEU09302.1 (succinate dehydrogenase cytochrome b subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 110.5 bits (275), Expect = 5.500e-21
Identity = 73/177 (41.24%), Postives = 98/177 (55.37%), Query Frame = 0
Query:    1 MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPAL--MSSLGNS--MVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPN-MLDNRGVSEASYILLGATVAASLAAGF 173
            M L+TA +   +      +Q    N    +    V  K S     K++YTER  RTGRPVSPHV IY  PIGAL+SI TRVTG  L+ G  G+  + L GG   AL  M ++G++   +  PAK+  +FP++YH   GLRH++WD  P+  LDN  V +AS  L G+    SL   F
Sbjct:    2 MSLKTAISPKLQP----FLQRAIQNHGGLVRPMTVISKSSAEEYKKQNYTERMNRTGRPVSPHVQIYSMPIGALSSITTRVTGILLSFGALGVGGIDLIGGSGSALSVMEAIGDTSFFISGPAKLAVAFPIVYHSFGGLRHFVWDQFPDKFLDNDMVPKASQALFGSATVISLGLMF 174          
BLAST of NO17G00800 vs. NCBI_GenBank
Match: EJK61431.1 (hypothetical protein THAOC_18084 [Thalassiosira oceanica])

HSP 1 Score: 110.2 bits (274), Expect = 7.200e-21
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 0
Query:   38 KLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGD----VPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174
            K S +   KE+Y+ R A TGRP+SPHVTIY FP+GAL+SI  RVTG  L+ G  G+  V L GG                ++   AK   +FP +YHY  G RH +WD  P ML N  V +A+Y L+G ++  S AA F+
Sbjct:   80 KESAAEFRKENYSARMAATGRPISPHVTIYSFPVGALSSITNRVTGVMLSFGAAGLGAVELVGGSGAXXXXXXXXXXXXGVMAAGAKFAVAFPFVYHYMGGARHLIWDTKPEMLTNVDVEKATYALVGGSLLLSTAAVFI 219          
The following BLAST results are available for this feature:
BLAST of NO17G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21144.12.800e-5770.22succinate dehydrogenase cytochrome b subunit [Nann... [more]
EWM21145.12.400e-4069.78succinate dehydrogenase cytochrome b subunit [Nann... [more]
CBN78408.14.700e-2858.27SDH3, succinate dehydrogenase subunit 3 [Ectocarpu... [more]
GAX17880.19.100e-2442.86succinate dehydrogenase (ubiquinone) cytochrome b5... [more]
XP_002293940.11.300e-2251.47predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX24530.11.300e-2247.69hypothetical protein FisN_18Lh084 [Fistulifera sol... [more]
CCI47384.12.300e-2246.15unnamed protein product [Albugo candida][more]
CCA17177.18.600e-2246.15transmembrane protein putative [Albugo laibachii N... [more]
OEU09302.15.500e-2141.24succinate dehydrogenase cytochrome b subunit [Frag... [more]
EJK61431.17.200e-2143.57hypothetical protein THAOC_18084 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004802NSK004802Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00800.1NO17G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600093gene_7805Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SDH3gene9278Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00800.1NO17G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00800 ID=NO17G00800|Name=NO17G00800|organism=Nannochloropsis oceanica|type=gene|length=1256bp
ATGCCTCTCCGGACCGCCTTTGCCGGCAGCTGCAAGGCCGTGGGTGCAGG
CCTCGTCCAGAACGGCAGAAGTAACAAGGCGGCGGCGATGGCATGTCAGg
taaaaagggcagggagaggggtctagcgcgcatgcatgtggactggacat
gagggacatgaacgttggcgcacgggaaaagcgagaaactagatgcatgt
gcggtggtgcagggcatgcgatgctgcaagaccacagctaatgctgtctc
tagaactcttgcccatgtgatcatcaagttcagccatcgagcaaagcgac
ggcacctccaccaccgccatctcacaagcacaccatgatgccctgtcatg
ctcctcgacacttaactcgccctttggttatgcgaaccttggttcctccc
atcctctcctcctgcccattcttgtcatcctcaacaaactcgctgataca
acccaccaccctccctccaccaccaacgtagATCGTGCCCCGCAAACTCT
CTACTAGCACCGCAGGGAAAGAGTCCTACACCGAACGGCAGGCCAGGACT
Ggtacgtcattgttttctgtttgtgttcgctacctggttattcagcagtc
gctttatcaacacttcccctgacatttctctccctgtccctccctctctc
cctccgctccccctccttccaaagGCCGTCCGGTCTCCCCCCACGTGACT
ATTTACAAATTCCCCATTGGTGCCTTGACGTCCATCGCTACGCGTGTTAC
TGGCGGAGCATTAACCGTAGGGTTGACAGGCATATCGTTGGTTGCGTTGG
GAGGAGGAGACGTCCCGGCCCTTATGAGCAGCCTGGGCAACTCCATGGTG
GGCGTCCCAGCCAAGGTGTTGTTTTCGTTTCCCCTGATTTACCACTATGG
ATCGGGGTTGCGACATTATgtaagcttgagagggagggacagaggggtat
gagtgggttttgagctcttgtgacgcgctgcggtatttcatggtgcttcc
ctcctgatgttttcatcagtcttgtatatttatttttaatcgacacgacg
acattcatgctcaccctctctttttcacccttcccctctctctccgttcc
ttccttcagCTGTGGGACCACAACCCCAACATGTTGGATAACCGCGGCGT
GTCCGAAGCCTCCTACATCCTCCTTGGGGCCACCGTTGCCGCCTCCCTAG
CCGCAGGCTTTGTAACTTTGAGCGCATCGCCTGATGTTGTAGAGAAGAAG
AAGTAG
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protein sequence of NO17G00800.1

>NO17G00800.1-protein ID=NO17G00800.1-protein|Name=NO17G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYT
ERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGG
GDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNR
GVSEASYILLGATVAASLAAGFVTLSASPDVVEKKK*
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Synonyms
Publications