NO17G00800, NO17G00800 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G00800 vs. NCBI_GenBank
Match: EWM21144.1 (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana]) HSP 1 Score: 231.1 bits (588), Expect = 2.800e-57 Identity = 125/178 (70.22%), Postives = 142/178 (79.78%), Query Frame = 0 Query: 1 MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFVTLSAS 179 M LRTA A S KAV + + Q++ + STA KE+YTERQARTGRPVSPHVTIYKFPI ALTSI+TRVTGG LTVGLTGISL+ALGG DVP LMSSLGNSMVGVPAKVLF FPLI+HYGSGLRH+ WD+NPN L+N+GV+EASYILLG+TVA SL +GFVTL+ S Sbjct: 1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVL-QAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISLVSGFVTLAPS 177
BLAST of NO17G00800 vs. NCBI_GenBank
Match: EWM21145.1 (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana]) HSP 1 Score: 174.9 bits (442), Expect = 2.400e-40 Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 0 Query: 1 MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYL 140 M LRTA A S KAV + + Q++ + STA KE+YTERQARTGRPVSPHVTIYKFPI ALTSI+TRVTGG LTVGLTGISL+ALGG DVP LMSSLGNSMVGVPAKVLF FPLI+HYGSGLRH++ Sbjct: 1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVL-QAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFV 138
BLAST of NO17G00800 vs. NCBI_GenBank
Match: CBN78408.1 (SDH3, succinate dehydrogenase subunit 3 [Ectocarpus siliculosus]) HSP 1 Score: 134.0 bits (336), Expect = 4.700e-28 Identity = 74/127 (58.27%), Postives = 85/127 (66.93%), Query Frame = 0 Query: 47 ESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174 ESYT RQARTGRPVSPHVTIY FP AL+SIA RVTG AL GL GIS L G D LMS+LG+S VG K+ SFPL+YHY +RH +WD+ P L GV++ SY LLG + A SL V Sbjct: 50 ESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176
BLAST of NO17G00800 vs. NCBI_GenBank
Match: GAX17880.1 (succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [Fistulifera solaris]) HSP 1 Score: 119.8 bits (299), Expect = 9.100e-24 Identity = 72/168 (42.86%), Postives = 100/168 (59.52%), Query Frame = 0 Query: 10 SCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVAL--GGGDVPALMSSLGNS--MVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174 SCK + QN ++ M V K S + +Y++R TGRPVSPHVT+Y FP AL+SI RVTG AL+VG G+ LV L G G +LM ++G+ +V AK SFP++YHY + +RH++WD P ML+N+ V ++SY L GA+ A S A F+ Sbjct: 9 SCKML-QKFTQNNNVLRSQMMRSMTVLSKQSGEEYKQLNYSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAISGALMFI 175
BLAST of NO17G00800 vs. NCBI_GenBank
Match: XP_002293940.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88949.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 115.9 bits (289), Expect = 1.300e-22 Identity = 70/136 (51.47%), Postives = 87/136 (63.97%), Query Frame = 0 Query: 46 KESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPAL--MSSLGN-SMVG-----VPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174 KE+Y+ R A+T RPVSPHVTIY FP+ AL+SIATRVTG L+ G G+ +V + GG AL M +G+ MVG AK +FP YHY GLRH +WD++P ML N V +ASY LLGA+V S A V Sbjct: 56 KENYSARMAKTRRPVSPHVTIYSFPVCALSSIATRVTGCILSFGAAGLGIVEIFGGSGAALSTMQCIGSGEMVGGALFVAGAKFSVAFPFAYHYLGGLRHLVWDNSPEMLTNVDVEKASYGLLGASVLLSSVAAVV 191
BLAST of NO17G00800 vs. NCBI_GenBank
Match: GAX24530.1 (hypothetical protein FisN_18Lh084 [Fistulifera solaris]) HSP 1 Score: 115.9 bits (289), Expect = 1.300e-22 Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 0 Query: 48 SYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVAL--GGGDVPALMSSLGNS--MVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174 +Y++R GRPVSPHVT+Y FP AL+SI RVTG AL+VG G+ LV L G G +LM ++G+ +V AK SFP++YHY + +RH++WD P ML+N+ V ++SY L GA+ A S A F+ Sbjct: 45 NYSKRMKEMGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGLVVAAAAKFAVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAISGALIFI 174
BLAST of NO17G00800 vs. NCBI_GenBank
Match: CCI47384.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 115.2 bits (287), Expect = 2.300e-22 Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = 0 Query: 39 LSTSTAGK-ESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPA-----KVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFVTL 176 +STSTA SYT+RQAR GRPVSPHV IY PI A++SI R+TG L+VG S AL GGDVP+L+ S + V +PA K+L +FP+ YH + +RH +WD P +++N+ +SY L A+V +L+A T+ Sbjct: 23 MSTSTASSPSSYTQRQARLGRPVSPHVQIYAMPITAVSSITNRITGVGLSVGFLAASSYALVGGDVPSLIYS---AQVSIPAFTPLSKLLVAFPISYHTLAAIRHMVWDKRPELINNKDSPRSSYALFSASVVIALSASMYTI 162
BLAST of NO17G00800 vs. NCBI_GenBank
Match: CCA17177.1 (transmembrane protein putative [Albugo laibachii Nc14]) HSP 1 Score: 113.2 bits (282), Expect = 8.600e-22 Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 0 Query: 39 LSTS-TAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPALMSSLGNSMVGVPA-----KVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFVTL 176 +STS T+ + SY++RQAR GRPVSPHV IY PI A++SI RVTG L+VG S AL GGDVP+L+ S + V +PA K+ +FPL YH + +RH WD P +++N+ +SY L GA+ +LAA T+ Sbjct: 23 MSTSVTSNQPSYSQRQARLGRPVSPHVQIYAMPITAVSSITNRVTGVGLSVGFVAASSYALVGGDVPSLIHS---AQVSIPAFTPLSKLFVAFPLSYHTLAAIRHMAWDKRPELINNKDSPTSSYALFGASALIALAASMYTI 162
BLAST of NO17G00800 vs. NCBI_GenBank
Match: OEU09302.1 (succinate dehydrogenase cytochrome b subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 110.5 bits (275), Expect = 5.500e-21 Identity = 73/177 (41.24%), Postives = 98/177 (55.37%), Query Frame = 0 Query: 1 MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGDVPAL--MSSLGNS--MVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPN-MLDNRGVSEASYILLGATVAASLAAGF 173 M L+TA + + +Q N + V K S K++YTER RTGRPVSPHV IY PIGAL+SI TRVTG L+ G G+ + L GG AL M ++G++ + PAK+ +FP++YH GLRH++WD P+ LDN V +AS L G+ SL F Sbjct: 2 MSLKTAISPKLQP----FLQRAIQNHGGLVRPMTVISKSSAEEYKKQNYTERMNRTGRPVSPHVQIYSMPIGALSSITTRVTGILLSFGALGVGGIDLIGGSGSALSVMEAIGDTSFFISGPAKLAVAFPIVYHSFGGLRHFVWDQFPDKFLDNDMVPKASQALFGSATVISLGLMF 174
BLAST of NO17G00800 vs. NCBI_GenBank
Match: EJK61431.1 (hypothetical protein THAOC_18084 [Thalassiosira oceanica]) HSP 1 Score: 110.2 bits (274), Expect = 7.200e-21 Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 0 Query: 38 KLSTSTAGKESYTERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGGGD----VPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNRGVSEASYILLGATVAASLAAGFV 174 K S + KE+Y+ R A TGRP+SPHVTIY FP+GAL+SI RVTG L+ G G+ V L GG ++ AK +FP +YHY G RH +WD P ML N V +A+Y L+G ++ S AA F+ Sbjct: 80 KESAAEFRKENYSARMAATGRPISPHVTIYSFPVGALSSITNRVTGVMLSFGAAGLGAVELVGGSGAXXXXXXXXXXXXGVMAAGAKFAVAFPFVYHYMGGARHLIWDTKPEMLTNVDVEKATYALVGGSLLLSTAAVFI 219 The following BLAST results are available for this feature:
BLAST of NO17G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G00800 ID=NO17G00800|Name=NO17G00800|organism=Nannochloropsis oceanica|type=gene|length=1256bpback to top protein sequence of NO17G00800.1 >NO17G00800.1-protein ID=NO17G00800.1-protein|Name=NO17G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bpback to top Synonyms
Publications
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