NO17G00750, NO17G00750 (gene) Nannochloropsis oceanica

Overview
NameNO17G00750
Unique NameNO17G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3636
Alignment locationchr17:258587..262222 -

Link to JBrowse

Properties
Property NameValue
DescriptionCalcium calmodulin-dependent protein kinase 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:258587..262222 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
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BLAST of NO17G00750 vs. NCBI_GenBank
Match: EWM20004.1 (calcium calmodulin-dependent protein kinase 1 [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 3.400e-34
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0 
Query:  278 KLLPLLTIQHAIAQSIELAHRACAHSPTDAHDVKRSAVLCRSQLIYTIKLLKSIEQTAASVLEMFPDLELAIEDDEPALAQDFFETVKK 367
            KLLPLLTIQH IA SIELAHRAC HSP DAHDVKRSA+LCR+QLIYTIKLLK IEQTAASVLEMFPDLELAIEDDEP+LA DFFETV+K
Sbjct:    9 KLLPLLTIQHTIAHSIELAHRACEHSPQDAHDVKRSAILCRAQLIYTIKLLKKIEQTAASVLEMFPDLELAIEDDEPSLAHDFFETVRK 97
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BLAST of NO17G00750 vs. NCBI_GenBank
Match: CBJ28057.1 (calcium/ calmodulin-dependent protein kinase 1 [Ectocarpus siliculosus])

HSP 1 Score: 89.4 bits (220), Expect = 6.600e-14
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 0 
Query:  280 LPLLTIQHAIAQSIELAHRACAHSPTDAHDVKRSAVLCRSQLIYTIKLLKSIEQTAASVLEMFPDLELAIEDDEPALAQDFFETVKKWVGDLRRTVGKAQHRNQESIFKLHNILVKGGEMEEE 403
            +PLL +Q  I   +E A    +  P  A  ++RSA LCR  L  ++ LLK IE+TAA V+ +FPDL LA+E+ EP LA+DFF TVK WV ++   V   Q  N+ +  ++ + +    EM  E
Sbjct:  536 VPLLQLQARITAVMETAVGTYSDCPQGAASLRRSAALCRESLRESVTLLKKIERTAAQVITLFPDLTLAVEEGEPDLARDFFATVKSWVREMYTDVNVVQAHNKANAVEVGDAMKTHAEMGME 658
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BLAST of NO17G00750 vs. NCBI_GenBank
Match: GBG24809.1 (Protein kinase, putative [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 79.0 bits (193), Expect = 9.000e-11
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 0 
Query:  728 SVRPLSPSPKSRE-LSLVLAKLRDVDEILEHLAIFWAQTEVILEALLQKSEHVERFVGYSHKPRLKDRFVARLGEYRMFWVGVQGMCRQFTTAVFA 823
            SV  L P  +  E +S  LA L+++D +L+  A FW+  EV+++ LLQ++ HVE  V YS  PRL+ RF+ R+ +Y   W  +  MC+QF   + A
Sbjct:  966 SVVSLQPGAEHLEPISKALAMLKEIDRLLQKHASFWSHMEVVVDVLLQRANHVETMVNYSRNPRLRGRFLERVEDYSQMWTRITHMCQQFNNKLHA 1061
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BLAST of NO17G00750 vs. NCBI_GenBank
Match: EWM25060.1 (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 2.200e-9
Identity = 41/119 (34.45%), Postives = 71/119 (59.66%), Query Frame = 0 
Query:  282 LLTIQHAIAQSIELAHRACAH-----SPTDAHDVKRSAVLCRSQLIYTIKLLKSIEQTAASVLEMFPDLELAIEDDEPALAQDFFETVKKWVGDLRRTVGKAQHRNQESIFKLHNILVK 396
            L+ +Q  IAQS+ +A           +   A+ V+  AV+CR +L  T+KLL+ + + AA VL +FPDL LA+++ E  LAQ FF ++++W+ ++R+ V   Q  N+ +  ++  I+ K
Sbjct:  666 LVKVQRWIAQSLGVAFDLMLSEKGRVASDVAYCVRTGAVVCRYELHLTVKLLRKVHEVAALVLAIFPDLTLALKEGELKLAQSFFLSIRQWLSEIRKEVQDVQRSNETATLQMSRIIKK 784
The following BLAST results are available for this feature:
BLAST of NO17G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM20004.13.400e-3488.76calcium calmodulin-dependent protein kinase 1 [Nan... [more]
CBJ28057.16.600e-1440.65calcium/ calmodulin-dependent protein kinase 1 [Ec... [more]
GBG24809.19.000e-1139.58Protein kinase, putative [Aurantiochytrium sp. FCC... [more]
EWM25060.12.200e-934.45serine threonine-protein kinase dclk3 [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004798NSK004798Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00750.1NO17G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|169853gene_7810Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00750.1NO17G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00750 ID=NO17G00750|Name=NO17G00750|organism=Nannochloropsis oceanica|type=gene|length=3636bp
ATGCAGgtatgtacggcgtgccttttctcccctccctcctcccctccctc
cctttcgctctattttgtctgcacgtgatgcatgatctgcaagctactac
ttaccatacatcaggttctgaccctccctccctccctccctcactccctc
tctccctctctccctccctccttcccaagGTTGACCCGCAAGCACGCTTC
AGCGTCGCGCAAGCCCTCAAACACCCGTGGATTACCGGAGAGCCCTTTGT
AGGACCGACCATTCAAACCTCCTCCTCCGCGCAACGGCAGCAGCAGCAGC
AGCAGCGGATGGATGGGATGATGGGGCGCTTGGCCGTGGGGGGAGGAAGA
GGGAAACTGCCTCTAGCCCTTCCTCCCTCCCCTCCTCCCGCTCCCCCGAC
CCCTCGAGAACTGTCTGCGTCTATATCGACGACGATGGGGCTGGAAGAGT
GTACGGGCGGAGGGAGCTACGACGAGGAGATATTCCGACTGACCTCCTCC
GGTGACCAGgtacgcgttcggctggcccccttgcacccctcccttcctcc
ctctctcattcccttcccccccctcctgattctcattcttaacagacaaa
ttgcaggtgtaatcttaagtgtgtatcttattcatcatccttttttcctt
cctccctccttcctttcctccccttttcagGTGCGGACCAACATCCGGAT
GGAGCCCGGCATGAAAGTCGTGCACCAAGACCCGTCCTCCTTCCCACCCT
CCTCCTCTTTCTCCTCCTCTTACTCCTCCGTGCATCAACAGCAGCAGCAG
CAACACCACCACCATCACCAGCAGCAGCAACAACACTACCACCCCCAGCA
GCAACAACACTACCACCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
GGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
AGCTCGGGTCTCCTTTCTCTTCTTTCTCCCCCAATTCTTCCCACCACCAC
AGCCCTTTCAAACCCGTCCTACTACTACCAGCAGCAGCAGCAACAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAACAGCAACAACCA
GAACAACAGCAGCTGTCTACTTTCAATTTCATGGTAAACAACAACAGCAA
CAACAGCCACAACAGCGAGTCCCTCAAGCTGCTCCCCCTGTTGACGATCC
AGCACGCCATTGCCCAATCCATCGAACTCGCCCACCGAGCATGCGCACAT
TCACCCACCGACGCCCATGACGTGAAACGGTCGGCGGTCCTCTGTCGCTC
CCAACTCATATACACCATTAAGCTCCTGAAATCGATTGAGCAGACAGgta
gggagggaaggaggaaaggaggaaaggagggagtggtgggactggccgtg
aaaggcgaaaagtctcccttggcgtggaggccaaacctttgaaacgcgag
cgggggagatgaaagatttgcaagctactgacctcttcctccctcctttc
ttccctccctccctccttcccttcctaaccccgttagCCGCCTCTGTCCT
CGAAATGTTTCCGGACCTGGAGCTGGCTATAGAAGACGATGAACCGGCCC
TGGCGCAGGACTTTTTCGAGACTGTGAAGAAATGGGTGGGGGATCTGAGG
CGTACCGTCGGGAAAGCTCAGCACCGCAATCAAGAGAGCATCTTTAAATT
GCACAATATTTTGGTGAAAGGAGGGGAGATGGAAGAGGAGGAGGACGTGG
AGGAGGGGGAGGAGGATGGGAGGGAGAGGGAGGGAGGGAGGGAGGGAGGG
ATGTATATGGGGGGGGCACGTATTGAAAGTGTTTCATCGAGCTCGTTGTC
GGTGGCGGGGATGGAGGTAGGGAGGGAGGTAGCGAGAGAGGGTTCTATTT
CATCAGCGTTGCAGCAGGAAGAAGAAAAGTCGAAAAGTGCGGGCACAAGC
AATTCCGCTACCAACCACCTCTACCATCTGCCGCCGCCACAGCAGCAACA
ACAGCAGCAACAAAAACAACAGCAGCAACAACAACAACAACAGCCGCACC
AACAGCAGCAGCAGCAGCAAGGAGGACCAAAACAACAGAAACGCGTCTCC
CGCATTCGCAGCCGTGATGACCGTGACAGAGAATCCGGGCCTCTCCCACA
CAAGCAACCGCACCCCTCTGTCCCCTCCGTCCCAAAAGAAGGAGGACACG
TCACCCGGCGCAACGACTCCACCTCCTCCTCTTCCTCCACCCTCTCCTCC
TCGTCATCCACCTCGTCTTCCTCCTCGTCTTCCTCCTCGTCCACGGTGGA
ACGTCAAAAGGAGGCCGGGCTCTTGTCCCTTGACCCGGAGCTCTACCAGG
CCGTAAAAAAACTGAAGGAGGCGACGGACAGCGACGTGAAACTATCCGAG
ACTCAACTGCTCGATTTGTTCTTTTCCGTCAATGGCAGCAACCACCTGCT
GCGGCAGCAGCAGCAGCAGGGGAAGGGGAAGGGCGAAGGGGTGTTGGAGG
AAGTGAAGGCGGGAAGGAAACTAGGCTCTGGTCCGGCGGGAAGAGGAACT
ATTGTGGATGGCGGGGAAAGAGGAAGCGAAGGAGGAAAGGAAGGGGGAAG
GGATGGTGCTGTGGACCCTCTGGCAATGGACACCAGCTTCGGCCGTGCCC
CTAGTCAGATGTACACAACAATGGCTGTCGACCCCCCCCCCACTCCCTCC
CAACGTTCCTTCCAATCCGTCCGCCCTCTCTCCCCCAGCCCTAAATCTCG
AGAGCTCTCCTTAGTGCTGGCGAAGCTGCGGGACGTGGATGAAATATTGG
AGCACCTCGCCATCTTCTGGGCACAGACAGAAGTCATTCTGGAAGCGCTG
TTGCAGAAATCCGAACACGTGGAACGTTTTGTGGGGTACTCGCACAAACC
GCGGTTGAAGGACCGATTCGTAGCGAGGTTGGGCGAGTATCGGATGTTTT
GGGTGGGGGTGCAGGGCATGTGCCGCCAGTTTACCACGGCTGTCTTTGCT
GCTCCTGCTGCTCCTGCTGCTGCTACCGGTGCCGCTGCTGCTCCCGGTAC
TGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGATTCGTCGGCGGCGACTG
CGGCGATGATGGGTAGGTATGGAAGCGGTGGAGGGATTGGGGGAGGGATG
ATGTCTTCCTTTGCTTTTTTGGATACTCCGTCTTTCCCAGAGTCGACGGT
GGCGCAGCAGGAAGGAGGAAGGGGAGGAGGCAGAGGAAGGAGGAGGGGGG
AGGAGGGATGGATAGTAGGCAGCAGGTGCCCATGTATCAATTTGTGGAAA
AGCGGTAGAGAGAGGGGAAAGGGAAGGGTGGGGGGGGTGCCCCTCCAATG
AGGTGTAGCAGGGATGGATCCTGAAAGTGGCGGATAATACACGTCAAGTC
TGTGAACTTCTGTGGTTGGGAAGGAAACCACGGACGGAGAATAACAATGG
GGATGGTAGGGGAGGAATATAGGAACGAGGAGGTAGAGGAGACAGAGGAT
GGGGAAGGAAGTTTGGTAGACGTCCCTTGGAAAGACGAATTAGTTTTTTT
TTACAAAGGACGTATATAATATGAGAAAGAGGGACAGCACGCAACCATGC
ATGCATGCAATGAAAAACAGTGTAGAGGAGCATCGA
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protein sequence of NO17G00750.1

>NO17G00750.1-protein ID=NO17G00750.1-protein|Name=NO17G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=939bp
MQVDPQARFSVAQALKHPWITGEPFVGPTIQTSSSAQRQQQQQQRMDGMM
GRLAVGGGRGKLPLALPPSPPPAPPTPRELSASISTTMGLEECTGGGSYD
EEIFRLTSSGDQVRTNIRMEPGMKVVHQDPSSFPPSSSFSSSYSSVHQQQ
QQQHHHHHQQQQQHYHPQQQQHYHPQQQQQQQQQQRQQQQQQQQQQQQQQ
QQSSGLLSLLSPPILPTTTALSNPSYYYQQQQQQQQQQQQQQQQQQRQQQ
QPEQQQLSTFNFMVNNNSNNSHNSESLKLLPLLTIQHAIAQSIELAHRAC
AHSPTDAHDVKRSAVLCRSQLIYTIKLLKSIEQTAASVLEMFPDLELAIE
DDEPALAQDFFETVKKWVGDLRRTVGKAQHRNQESIFKLHNILVKGGEME
EEEDVEEGEEDGREREGGREGGMYMGGARIESVSSSSLSVAGMEVGREVA
REGSISSALQQEEEKSKSAGTSNSATNHLYHLPPPQQQQQQQQKQQQQQQ
QQQPHQQQQQQQGGPKQQKRVSRIRSRDDRDRESGPLPHKQPHPSVPSVP
KEGGHVTRRNDSTSSSSSTLSSSSSTSSSSSSSSSSTVERQKEAGLLSLD
PELYQAVKKLKEATDSDVKLSETQLLDLFFSVNGSNHLLRQQQQQGKGKG
EGVLEEVKAGRKLGSGPAGRGTIVDGGERGSEGGKEGGRDGAVDPLAMDT
SFGRAPSQMYTTMAVDPPPTPSQRSFQSVRPLSPSPKSRELSLVLAKLRD
VDEILEHLAIFWAQTEVILEALLQKSEHVERFVGYSHKPRLKDRFVARLG
EYRMFWVGVQGMCRQFTTAVFAAPAAPAAATGAAAAPGTGAGAGAGAGAD
SSAATAAMMGRYGSGGGIGGGMMSSFAFLDTPSFPESTVAQQEGGRGGGR
GRRRGEEGWIVGSRCPCINLWKSGRERGKGRVGGVPLQ*
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Synonyms
Publications