NO17G00720, NO17G00720 (gene) Nannochloropsis oceanica

Overview
NameNO17G00720
Unique NameNO17G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length502
Alignment locationchr17:254016..254517 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:254016..254517 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0033179proton-transporting V-type ATPase, V0 domain
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0015078proton transmembrane transporter activity
GO:0005215transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR008389ATPase_V0-cplx_e1/e2_su
Homology
[Close]
BLAST of NO17G00720 vs. NCBI_GenBank
Match: XP_005852677.1 (hypothetical protein NGA_0720000 [Nannochloropsis gaditana CCMP526] >EKU23155.1 hypothetical protein NGA_0720000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 126.7 bits (317), Expect = 3.100e-26
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 0 
Query:    3 STFNPPIAALIAWTTICATVIIVTNVAKFAKYINKDNAGIAVVFTITAGISTYMLWLVTWMQQWHPLLTPVMPA 77
            ST +PPI+ALIAWT IC TVI++TN+AK  KYI+KDNAGIAVVFTITAGI T++LWLVTWMQQWHPLLTP +PA
Sbjct:    2 STLSPPISALIAWTVICGTVIVLTNIAKVTKYIDKDNAGIAVVFTITAGICTFILWLVTWMQQWHPLLTPTLPA 75
The following BLAST results are available for this feature:
BLAST of NO17G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852677.13.100e-2678.38hypothetical protein NGA_0720000 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004795NSK004795Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00720.1NO17G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600127gene_7813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00720.1NO17G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00720 ID=NO17G00720|Name=NO17G00720|organism=Nannochloropsis oceanica|type=gene|length=502bp
ATGTCATCCACTTTTAACCCGCCCATCGCGGCGTTGATTGCCTGGACGAC
AATCTGCGCGACCGTCATTATCGTCACGAACGTGGCCAAGTTCGCCAAGT
ATATCAACAAGGACAACGCCGGgtaagcggatgttatgattaaagagggg
ttatatataaaggggagataatggacatcgatgctttatgtttttgggca
tctggggttgtgcatctagttcatctgtttctttccccgttttcttcatt
tccacagGATTGCCGTCGTCTTCACTATTACAGCAGGAATCTCCACCTAC
ATGCTCTGgtacgtgaggtgtatttgtgtgaatatgcattcattcttttt
tttaaagtacctctcgcgtccccatttttcaaagaggcatgttgacacaa
cttacgcccacccctctaattctcttccctaaccaaaccagGTTGGTTAC
GTGGATGCAGCAATGGCACCCCCTTCTTACACCCGTCATGCCCGCTGATT
AG
back to top

protein sequence of NO17G00720.1

>NO17G00720.1-protein ID=NO17G00720.1-protein|Name=NO17G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MSSTFNPPIAALIAWTTICATVIIVTNVAKFAKYINKDNAGIAVVFTITA
GISTYMLWLVTWMQQWHPLLTPVMPAD*
back to top
Synonyms
Publications