NO17G00620, NO17G00620 (gene) Nannochloropsis oceanica

Overview
NameNO17G00620
Unique NameNO17G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1128
Alignment locationchr17:220701..221828 -

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme E2 J2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:220701..221828 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: EWM21161.1 (ubiquitin-conjugating enzyme e2 j2 isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 295.8 bits (756), Expect = 1.200e-76
Identity = 140/155 (90.32%), Postives = 150/155 (96.77%), Query Frame = 0 
Query:    1 MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPE 156
            MAT+LSAKRLRKEL+ALQRDPVENITARPLESNIL+WHYVLKGA+GSPYEGGYYHGKLKFPPEYPLKPPSI+MLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETS  QK+KLA  +MAFNLT+ +FVQ+FPE
Sbjct:    8 MATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPE 162
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BLAST of NO17G00620 vs. NCBI_GenBank
Match: XP_008912814.1 (hypothetical protein PPTG_16980 [Phytophthora parasitica INRA-310] >ETI35489.1 hypothetical protein F443_18176 [Phytophthora parasitica P1569] >ETK75738.1 hypothetical protein L915_17695 [Phytophthora parasitica] >ETL29180.1 hypothetical protein L916_17583 [Phytophthora parasitica] >ETL82397.1 hypothetical protein L917_17428 [Phytophthora parasitica] >ETM35635.1 hypothetical protein L914_17488 [Phytophthora parasitica] >ETN01913.1 hypothetical protein PPTG_16980 [Phytophthora parasitica INRA-310] >ETO64227.1 hypothetical protein F444_18199 [Phytophthora parasitica P1976] >ETP05322.1 hypothetical protein F441_18041 [Phytophthora parasitica CJ01A1] >ETP33450.1 hypothetical protein F442_18016 [Phytophthora parasitica P10297] >KUF79616.1 Ubiquitin-conjugating enzyme E2 J2 [Phytophthora nicotianae])

HSP 1 Score: 227.3 bits (578), Expect = 5.100e-56
Identity = 104/157 (66.24%), Postives = 130/157 (82.80%), Query Frame = 0 
Query:    1 MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            MA+ ++ KRLRKE +A+QR PV+ I A PLE+NIL WHYV+ G +G+PYEGG+YHGKLKFPPEYP+KPPS++M+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+ AQKRK A  ++  N TN+ F +LFP+ V
Sbjct:    1 MASVMATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAVASLETNCTNATFRKLFPDLV 157
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BLAST of NO17G00620 vs. NCBI_GenBank
Match: CBJ28210.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 226.1 bits (575), Expect = 1.100e-55
Identity = 99/157 (63.06%), Postives = 132/157 (84.08%), Query Frame = 0 
Query:    1 MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            MA+ ++ +RLRKEL+A++R+P++NI A P+++NIL WHYV+ G +GSPYEGG+YHGKLKFPPEYP+KPPS++M+TP+GRF  + RLCLSMSDFHPE+WNPMWSVSTILMGL +FMLD+A TLGS+ +S AQK++ A  ++  N  N  F +LFP+ V
Sbjct:   21 MASDMATRRLRKELMAIKRNPIDNIVATPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLV 177
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: XP_009525163.1 (hypothetical protein PHYSODRAFT_491377 [Phytophthora sojae] >EGZ22446.1 hypothetical protein PHYSODRAFT_491377 [Phytophthora sojae])

HSP 1 Score: 224.6 bits (571), Expect = 3.300e-55
Identity = 102/153 (66.67%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    5 LSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            ++ KRLRKE +A+QR PV+ I A P+ESNIL WHYV+ G +G+PYEGG+YHGKLKFPPEYP+KPPS++M+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+ AQKRK A  ++  N TN+ F +LFP+ V
Sbjct:    1 MATKRLRKEYLAMQRKPVDYIQAVPVESNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAAASLETNCTNATFRRLFPDLV 153
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: XP_002903724.1 (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >EEY54779.1 ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 224.6 bits (571), Expect = 3.300e-55
Identity = 102/153 (66.67%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    5 LSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            ++ KRLRKE +A+QR PV+ I A PLE+NIL WHYV+ G +G+PYEGG+YHGKLKFPPEYP+KPPS++M+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+ AQKRK A  ++  N TN+ F +LFP+ V
Sbjct:    1 MATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAAASLESNCTNATFRKLFPDLV 153
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: POM76799.1 (Ubiquitin-conjugating enzyme E2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 223.4 bits (568), Expect = 7.400e-55
Identity = 102/153 (66.67%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    5 LSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            ++ KRLRKE +A+QR PVE I A PLE+NIL WHYV+ G +G+PYEGG+YHGKLKFPPEYP+KPPS++M+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+ AQKRK A  ++  N +N+ F +LFP+ V
Sbjct:    1 MATKRLRKEYLAMQRKPVEYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAATSLETNCSNATFRKLFPDLV 153
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: OWZ11199.1 (Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya])

HSP 1 Score: 221.9 bits (564), Expect = 2.200e-54
Identity = 100/153 (65.36%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    5 LSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            ++ KRLRKE +++QR PVE I A P+E+NIL WHYV+ G +G+PYEGG+YHGKLKFPPEYP+KPPS++M+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+ AQKRK A  ++  N +N+ F +LFP+ V
Sbjct:    1 MATKRLRKEYLSMQRKPVEYIQAVPVETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAAASLETNCSNATFRKLFPDLV 153
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: CCA17577.1 (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14])

HSP 1 Score: 220.7 bits (561), Expect = 4.800e-54
Identity = 104/157 (66.24%), Postives = 126/157 (80.25%), Query Frame = 0 
Query:    1 MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            MA+ L+ KRLRKE +A+QR  +ENI A PL SNIL WHYV+ G   S YEGGYYHG L+FPPEYP+KPPS+LMLTP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI TS AQKR+ A  ++ +N ++ VF +LFP+ V
Sbjct:    1 MASFLATKRLRKEYIAIQRKSIENIVAAPLHSNILEWHYVIVGTSESCYEGGYYHGILRFPPEYPMKPPSVLMLTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQSTLGSIVTSEAQKRRYAAASLEYNCSSPVFRKLFPDLV 157
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: CCI39487.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 220.3 bits (560), Expect = 6.300e-54
Identity = 105/157 (66.88%), Postives = 125/157 (79.62%), Query Frame = 0 
Query:    1 MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            MA+ L+ KRLRKE +A+QR  +ENI A PL SNIL WHYV+ G   S YEGG+YHG L+FPPEYP+KPPS+LMLTP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML+S  TLGSI TS AQKR+ A  ++ FN ++ VF +LFP  V
Sbjct:    1 MASFLATKRLRKEYMAIQRKSIENIVAAPLHSNILEWHYVIIGTNDSCYEGGFYHGILRFPPEYPMKPPSVLMLTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLESQSTLGSIVTSEAQKRRYAANSLEFNCSSPVFRKLFPNLV 157
[Close]
BLAST of NO17G00620 vs. NCBI_GenBank
Match: XP_009033312.1 (hypothetical protein AURANDRAFT_20698, partial [Aureococcus anophagefferens] >EGB12242.1 hypothetical protein AURANDRAFT_20698, partial [Aureococcus anophagefferens])

HSP 1 Score: 219.9 bits (559), Expect = 8.200e-54
Identity = 100/157 (63.69%), Postives = 125/157 (79.62%), Query Frame = 0 
Query:    1 MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYEGGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFVQLFPEFV 158
            MA+ L+ +RL +E  A+++ P +NI ARPLESN+L WHYV+ G + S YEGG+YHGKLKFP EYPL+PPS+LM TPSGRFK N RLCLSMSDFHPE+WNPMWSVSTIL GL +FML+S+PTLGS+E + AQ+R+ A  ++ FN  N  F  LFP+ V
Sbjct:    1 MASDLATRRLLREFAAMRKAPPDNIVARPLESNVLEWHYVITGTKDSVYEGGHYHGKLKFPTEYPLRPPSVLMCTPSGRFKTNCRLCLSMSDFHPESWNPMWSVSTILTGLYSFMLESSPTLGSVEATPAQRRRFAAQSLEFNCANETFRGLFPDLV 157
The following BLAST results are available for this feature:
BLAST of NO17G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21161.11.200e-7690.32ubiquitin-conjugating enzyme e2 j2 isoform 2 [Nann... [more]
XP_008912814.15.100e-5666.24hypothetical protein PPTG_16980 [Phytophthora para... [more]
CBJ28210.11.100e-5563.06conserved unknown protein [Ectocarpus siliculosus][more]
XP_009525163.13.300e-5566.67hypothetical protein PHYSODRAFT_491377 [Phytophtho... [more]
XP_002903724.13.300e-5566.67ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
POM76799.17.400e-5566.67Ubiquitin-conjugating enzyme E2 [Phytophthora palm... [more]
OWZ11199.12.200e-5465.36Ubiquitin-conjugating enzyme E2 [Phytophthora mega... [more]
CCA17577.14.800e-5466.24ubiquitinconjugating enzyme E2 putative [Albugo la... [more]
CCI39487.16.300e-5466.88unnamed protein product [Albugo candida][more]
XP_009033312.18.200e-5463.69hypothetical protein AURANDRAFT_20698, partial [Au... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004780NSK004780Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00620.1NO17G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600178gene_7823Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100108g8gene9262Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00620.1NO17G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00620 ID=NO17G00620|Name=NO17G00620|organism=Nannochloropsis oceanica|type=gene|length=1128bp
ACAGTGTTAGTCCCCATGGCCACATCTTTGTCTGCCAAACGCCTCCGGAA
GGAGCTCGTGGCGCTACAGCGGGACCCGGTAGAGAACATAACAGCCCGGC
CCTTAGAAAGgttagtcgcttggtgtgttttaatctctgtgttttgctga
ctccacgcatgtatggacgacttgtatgggcgagcgggcatgcgtatttt
ggtggatatatatatacgttaagtgtggcgctcaaaccctcgtagcagcg
cgcagacaaagtagcagcatcgctatacggcaccgttgaacaagagcctg
tctctctaatacaataacaatgcttatgccttccctgtggtcctttcctc
ctccttctctcaacagCAACATCCTTATTTGGCACTACGTTCTAAAGGGG
GCCAGGGGCAGCCCGTATGAAGGCGGCTACTACCACGGCAAGCTCAAGTT
TCCGCCTGAATACCCCCTCAAGCCTCCCTCCATTCTGATGCTCACCCCGT
CCGGTCGCTTCAAGCCTAACACACGCCTCTGCCTCTCAATgtatgcgatt
tgacaaactcttttttccccacatttttctggctttaccgctttcccgat
gtcataattgtgcctaccgcgtatttaagtccaccctcctgctcctgcgc
ttcctccctccctccctccctctttctctaccttcctagGTCCGACTTCC
ATCCCGAGACATGGAACCCTATGTGGTCTGTCAGTACCATTCTCATGGGT
CTGCAGGCCTTCATGCTTGACTCCGCGCCGACCCTCGGGAGCATCGAAAC
CAGCGCCGCCCAAAAACGAAAATTGGCGCAAGGGACTATGGCGTTTAATC
TGACAAATTCGGTATTTGTGCAGTTGTTTCCGGAATTCGTAGAGGAAGAA
GAGGAGCGGAGGAAGAAGAGGGAAGAGAATGGAGAGGGAGGTGCGGAGGG
TGGGGGAGTAGGGCTTTTGGGGGGGCTATTTGAAAGGGTGGGTGGAGGGG
AGGCAGGTGGAGGGCGGGCAAGACAAAAGGTGGGGAGGGAGGAAGTAGAG
CCAAGTTTGTCGTTGCTTCTAATTTGTGTGAGTATCACGTTGGGGGTGCT
GGCGATAATATTGCGGTTGTCAGGATAA
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protein sequence of NO17G00620.1

>NO17G00620.1-protein ID=NO17G00620.1-protein|Name=NO17G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MATSLSAKRLRKELVALQRDPVENITARPLESNILIWHYVLKGARGSPYE
GGYYHGKLKFPPEYPLKPPSILMLTPSGRFKPNTRLCLSMSDFHPETWNP
MWSVSTILMGLQAFMLDSAPTLGSIETSAAQKRKLAQGTMAFNLTNSVFV
QLFPEFVEEEEERRKKREENGEGGAEGGGVGLLGGLFERVGGGEAGGGRA
RQKVGREEVEPSLSLLLICVSITLGVLAIILRLSG*
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Synonyms
Publications