NO17G00600, NO17G00600 (gene) Nannochloropsis oceanica

Overview
NameNO17G00600
Unique NameNO17G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length435
Alignment locationchr17:215900..216334 -

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Properties
Property NameValue
DescriptionRibonucleoprotein LSM
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:215900..216334 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
Homology
[Close]
BLAST of NO17G00600 vs. NCBI_GenBank
Match: EWM21166.1 (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 1.100e-23
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 
Query:   19 FKLNGNRKVTGVLRGFDQFMNIVLDETVDDGSPDKNDIGLVVIRGNSVVQFECLEKL 76
            FKLNGNRKVTGVLRGFDQFMNIVLDETVDDG+PDKNDIGLVVIRGNSVVQFECLEKL
Sbjct:   32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88
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BLAST of NO17G00600 vs. NCBI_GenBank
Match: XP_008899698.1 (hypothetical protein PPTG_07284 [Phytophthora parasitica INRA-310] >ETI54771.1 hypothetical protein F443_02471 [Phytophthora parasitica P1569] >ETK94628.1 hypothetical protein L915_02353 [Phytophthora parasitica] >ETL48023.1 hypothetical protein L916_02314 [Phytophthora parasitica] >ETM01125.1 hypothetical protein L917_02243 [Phytophthora parasitica] >ETM54299.1 hypothetical protein L914_02343 [Phytophthora parasitica] >ETN15083.1 hypothetical protein PPTG_07284 [Phytophthora parasitica INRA-310] >ETO83539.1 hypothetical protein F444_02454 [Phytophthora parasitica P1976] >ETP24609.1 hypothetical protein F441_02419 [Phytophthora parasitica CJ01A1] >ETP52566.1 hypothetical protein F442_02439 [Phytophthora parasitica P10297] >KUF83103.1 Small nuclear ribonucleoprotein G [Phytophthora nicotianae] >KUF88388.1 hypothetical protein AM588_10002491 [Phytophthora nicotianae])

HSP 1 Score: 116.3 bits (290), Expect = 4.100e-23
Identity = 52/76 (68.42%), Postives = 67/76 (88.16%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            M KT GPDLK+Y+DK+L+ KLNGNRKV+GVLRGFDQFMN+ LDET+++  + + N IG+VVIRGNS+VQFECLE++
Sbjct:    1 MVKTAGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSATESNRIGMVVIRGNSIVQFECLERI 76
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BLAST of NO17G00600 vs. NCBI_GenBank
Match: XP_024578943.1 (small nuclear ribonucleoprotein g [Plasmopara halstedii] >CEG42574.1 small nuclear ribonucleoprotein g [Plasmopara halstedii])

HSP 1 Score: 115.5 bits (288), Expect = 7.000e-23
Identity = 52/76 (68.42%), Postives = 67/76 (88.16%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            M KT GPDLK+Y+DK+L+ KLNGNRKV+GVLRGFDQFMN+ LDETV++  + + N IG+VVIRGNS+VQFECL+++
Sbjct:    1 MVKTAGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLDRI 76
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BLAST of NO17G00600 vs. NCBI_GenBank
Match: CCI46590.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 112.8 bits (281), Expect = 4.500e-22
Identity = 51/76 (67.11%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            M K  GPDLK+Y+DK+L+ KLNGNRKV+GVLRG+DQFMN+ LDE +++  + + N IG+VVIRGNS+VQFECLEKL
Sbjct:    1 MPKVVGPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76
[Close]
BLAST of NO17G00600 vs. NCBI_GenBank
Match: XP_008875410.1 (hypothetical protein H310_10737 [Aphanomyces invadans] >XP_009830613.1 hypothetical protein H257_06928 [Aphanomyces astaci] >ETV79677.1 hypothetical protein H257_06928 [Aphanomyces astaci] >ETV96099.1 hypothetical protein H310_10737 [Aphanomyces invadans])

HSP 1 Score: 112.5 bits (280), Expect = 5.900e-22
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGS-PDKNDIGLVVIRGNSVVQFECLEKL 76
            MSK  GPDLK+Y+DK L+ KLNGNRKV+G+LRGFDQFMNI LD+T+++ S  + N IG+VVIRGNS+VQFECL+++
Sbjct:    1 MSKVTGPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76
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BLAST of NO17G00600 vs. NCBI_GenBank
Match: OQR93514.1 (small nuclear ribonucleoprotein G [Thraustotheca clavata])

HSP 1 Score: 110.5 bits (275), Expect = 2.300e-21
Identity = 48/76 (63.16%), Postives = 64/76 (84.21%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            MSK  GPDLKKY+DK L  KLNGNRKV+G+LRGFDQFMN+ L+E +++  + + N +G+VVIRGNS+VQFECL+++
Sbjct:    1 MSKNSGPDLKKYMDKTLCLKLNGNRKVSGILRGFDQFMNVTLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76
[Close]
BLAST of NO17G00600 vs. NCBI_GenBank
Match: OQR94131.1 (small nuclear ribonucleoprotein G [Achlya hypogyna])

HSP 1 Score: 110.2 bits (274), Expect = 2.900e-21
Identity = 49/76 (64.47%), Postives = 64/76 (84.21%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            MSK  GPDLKKY+DK L  KLNGNRKV+GVLRGFDQFMN+ L+E +++  + + N +G+VVIRGNS+VQFECL+++
Sbjct:    1 MSKNTGPDLKKYMDKTLCLKLNGNRKVSGVLRGFDQFMNVTLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76
[Close]
BLAST of NO17G00600 vs. NCBI_GenBank
Match: GAX93853.1 (Hypothetical protein PINS_001752 [Pythium insidiosum])

HSP 1 Score: 109.4 bits (272), Expect = 5.000e-21
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            M K  GPDLK+Y+DK+L+ KLNGNRKV+GVLRGFDQFMN+ L E V++  + + N +G+VVIRGNS+VQFECLEK+
Sbjct:    1 MVKVVGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLXEAVEEVSTTEANKLGMVVIRGNSIVQFECLEKI 76
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BLAST of NO17G00600 vs. NCBI_GenBank
Match: XP_008619023.1 (small nuclear ribonucleoprotein G [Saprolegnia diclina VS20] >XP_012205889.1 hypothetical protein SPRG_11492 [Saprolegnia parasitica CBS 223.65] >EQC27603.1 small nuclear ribonucleoprotein G [Saprolegnia diclina VS20] >KDO23400.1 hypothetical protein SPRG_11492 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.6 bits (270), Expect = 8.600e-21
Identity = 49/76 (64.47%), Postives = 64/76 (84.21%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GSPDKNDIGLVVIRGNSVVQFECLEKL 76
            MSK  GPDLKKY+DK L  KLNG+RKV+GVLRGFDQFMNI L+E +++  + + N +G+VVIRGNS+VQFECL+++
Sbjct:    1 MSKNTGPDLKKYMDKTLCIKLNGSRKVSGVLRGFDQFMNITLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76
[Close]
BLAST of NO17G00600 vs. NCBI_GenBank
Match: EIE88422.1 (hypothetical protein RO3G_13133 [Rhizopus delemar RA 99-880])

HSP 1 Score: 106.3 bits (264), Expect = 4.200e-20
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    1 MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGSP-DKNDIGLVVIRGNSVVQFECLEKL 76
            M KT  P+LKKY+DK+++ +LNGNRKVTGVLRG+D FMNIVLDETV++ SP ++N+IG+VVIRGNS+   E LE++
Sbjct:    1 MGKTSTPELKKYMDKRISLQLNGNRKVTGVLRGYDPFMNIVLDETVEEVSPTERNNIGMVVIRGNSIAIMEALERI 76
The following BLAST results are available for this feature:
BLAST of NO17G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21166.11.100e-2398.25ribonucleoprotein LSM [Nannochloropsis gaditana][more]
XP_008899698.14.100e-2368.42hypothetical protein PPTG_07284 [Phytophthora para... [more]
XP_024578943.17.000e-2368.42small nuclear ribonucleoprotein g [Plasmopara hals... [more]
CCI46590.14.500e-2267.11unnamed protein product [Albugo candida][more]
XP_008875410.15.900e-2267.11hypothetical protein H310_10737 [Aphanomyces invad... [more]
OQR93514.12.300e-2163.16small nuclear ribonucleoprotein G [Thraustotheca c... [more]
OQR94131.12.900e-2164.47small nuclear ribonucleoprotein G [Achlya hypogyna... [more]
GAX93853.15.000e-2165.79Hypothetical protein PINS_001752 [Pythium insidios... [more]
XP_008619023.18.600e-2164.47small nuclear ribonucleoprotein G [Saprolegnia dic... [more]
EIE88422.14.200e-2064.47hypothetical protein RO3G_13133 [Rhizopus delemar ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004777NSK004777Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00600.1NO17G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531875gene_7826Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100108g6gene9260Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00600.1NO17G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00600 ID=NO17G00600|Name=NO17G00600|organism=Nannochloropsis oceanica|type=gene|length=435bp
ATGAGCAAGACAGGCGGACCAGATCTCAAAAAGTACTTGGACAAGAAGCT
AGCATTCAAGCTGAATGGCAATCGCAAGgtaggcagggagggagggagag
gtcgtctaccttggggggtttcgtcggagtggggaggacggactccagac
agacgatggccggggggcggtgtatatgacggttagggaagtgatgctta
agcaaatgcagcagagacgcggtgcacctatctgctgatatgagcattct
cagtcactgccccctaactccttcctcactcacagGTAACTGGTGTACTA
CGCGGCTTTGATCAGTTCATGAACATTGTGTTGGACGAGACGGTGGATGA
CGGATCGCCTGACAAGAACGACATTGGTTTGGTGGTGATAAGAGGAAATT
CGGTGGTTCAGTTCGAGTGCCTGGAGAAGCTATAG
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protein sequence of NO17G00600.1

>NO17G00600.1-protein ID=NO17G00600.1-protein|Name=NO17G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MSKTGGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGS
PDKNDIGLVVIRGNSVVQFECLEKL*
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Synonyms
Publications