NO17G00570, NO17G00570 (gene) Nannochloropsis oceanica

Overview
NameNO17G00570
Unique NameNO17G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr17:209146..210729 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:209146..210729 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO:0016757transferase activity, transferring glycosyl groups
Vocabulary: INTERPRO
TermDefinition
IPR003378Fringe-like
Homology
BLAST of NO17G00570 vs. NCBI_GenBank
Match: XP_005713068.1 (unnamed protein product [Chondrus crispus] >CDF33265.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-10
Identity = 57/217 (26.27%), Postives = 98/217 (45.16%), Query Frame = 0
Query:  170 LAIGVISGPQLAQKRRVRLLQDTWFTSLDSQRDGVLVFSDGADATVPAVGIPGTG----------------------STWQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVT------------PQEGRLQGQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGLCI 353
            +A GV +G ++A  R   L +  W+ S+      +LV SD  DA +  VG+                          + W+G +D+ LPA+  L   FP  +WY+L+DDDT++   N    + +Q +      E+ +Y G+  F++              + + +G    FAHGGSG+V++A  + ++   + E +    E C     GD  +GLC+
Sbjct:   96 VAFGVKTGHEVAAHRLATLRRSGWW-SVGRDVPNILVVSDSDDADLGVVGLKAYAHDMLRVDNETHPREMPEKWWDKTGWRGDKDKNLPALHLLRTTFPGKKWYLLLDDDTYIFLDNFARYIMQQGM-----DEKPVYTGKVFFISRCGGFARDGTWAADKSKPKGM---FAHGGSGIVINAKAMEKVYSRLGECI---HEYC-SCWAGDMQVGLCM 299          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: ORZ33920.1 (hypothetical protein BCR44DRAFT_118307 [Catenaria anguillulae PL171])

HSP 1 Score: 70.5 bits (171), Expect = 1.500e-8
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 0
Query:  227 WQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQEGRLQ-GQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGLCIK 354
            W+    + +PA+  L   +P AEWYV++DDDT++   NL  +L      +    +E  Y+G        +G  + G    F HGGSG+VLS    REM+ ++ E +V    R      GD  LGLC++
Sbjct:  191 WKNDAHKNIPAIRELVNRYPGAEWYVMIDDDTYVFMENLNRVL------HPLNPDEPHYLGAPNTFRDCDGVTEMGDGPLFNHGGSGIVLSRGAAREMLKIVDECIV----RYHDCFAGDVRLGLCLR 308          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: XP_006676392.1 (hypothetical protein BATDEDRAFT_85009 [Batrachochytrium dendrobatidis JAM81] >EGF84283.1 hypothetical protein BATDEDRAFT_85009 [Batrachochytrium dendrobatidis JAM81] >OAJ37103.1 hypothetical protein BDEG_21171 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-8
Identity = 57/191 (29.84%), Postives = 86/191 (45.03%), Query Frame = 0
Query:  211 ADATVPAVGIPGTGSTWQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIG-RTMFVTPQEGRLQGQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGLCIKVLRGVSVRHDACLHALGPKGSYEGQGGGEEVGWFGDGG--RPCSFHY 399
            +D+ VP     G    W+    + LP    L   FP AEW+V++DDDT++   NL  M+S+         E+  YIG R MF+     +  G    F HGGSG+VLS A +R MV  +   +V    R +    GD    LC++  + + ++     H   P  ++          WF      RP +FH+
Sbjct:  217 SDSVVPDQNSLG----WKADAHKNLPGFRALYNKFPNAEWFVMLDDDTYMFFDNLLNMVSD------LDPEKPYYIGARNMFIGCDGVKKWGDGPAFGHGGSGIVLSRAAIRTMVSNLDACIV----RYKTCWAGDVRTALCLRD-QNILLKDPKGFHISPPNDAF----------WFPKETCLRPITFHH 382          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: XP_005703461.1 (hypothetical protein Gasu_55110 [Galdieria sulphuraria] >EME26941.1 hypothetical protein Gasu_55110 [Galdieria sulphuraria])

HSP 1 Score: 69.3 bits (168), Expect = 3.400e-8
Identity = 51/181 (28.18%), Postives = 79/181 (43.65%), Query Frame = 0
Query:  205 LVFSDGADATVPAVGIPGTGSTWQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQE-----GRLQGQMLP-FAHGGSGVVL---SAALVREMVPLIMEVLVGERERCQGTGYGDGDLGLCIKVLRGVSVRHDACLHALGPKGSYE 377
            L+ S  +      V +  T + W   +++ LP    L   FP  +WY++ DDDTF     L A+L     +   + E  IY+G    V   E     G   G + P FAHGGSG+++   +   + +M+P  M       +R Q    GD  +GLC + L    V       A+ PK  ++
Sbjct:  180 LLLSSSSQKKTLEVTVDQTKTGWWQDREKNLPGFHMLWKKFPYMDWYIMCDDDTFFFLDGLAAILQHPIFQQAMREEIPIYMGNQFNVALCEGYDPSGMTNGTLNPWFAHGGSGIIVNYWALEALMDMIPWCM-------QRFQDCWAGDIKIGLCFQELGIQIVPMGTHFIAVDPKSFFD 353          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: ORX43262.1 (hypothetical protein BCR36DRAFT_415674 [Piromyces finnis])

HSP 1 Score: 67.8 bits (164), Expect = 9.800e-8
Identity = 53/183 (28.96%), Postives = 80/183 (43.72%), Query Frame = 0
Query:  227 WQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQEGRLQGQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERC----QGTGYGDGDLGLCIKVLRGVSVRHDACLHALGPKGSYEGQGGGEEVGWFGDGGRPCSFHYAFGEDRE 406
            WQ    + +PA   L   +P A+WYV+VDDDT++  SNLK  LS          +E++Y+G   +  P       Q   FAHGG+G++LS A         M   VG  ++C         GD  L LC+  + G+ +      H       +  Q    E  W      P +FH+ F + ++
Sbjct:  165 WQLDVYKNIPAFKLLYDTYPNAKWYVMVDDDTYVFLSNLKKRLSFY------DPDEKLYLGAN-WPIPTGCYPSWQNARFAHGGAGIILSHA--------AMLAFVGNYDQCVHDFDDCYAGDVRLALCLNTV-GIRLNRFEHRHVNINWRGHSDQAPNLEYSWTEPCDLPLTFHHLFAKQQK 331          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: ORZ37435.1 (hypothetical protein BCR44DRAFT_1430228 [Catenaria anguillulae PL171])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 0
Query:  227 WQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIG-RTMFVTPQEGRLQGQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGLCIKVLRGVSVRHDACLHAL 370
            W+    ++LPA+  L   FP A+WY++ DDD +    NL   LS      K    +  Y+G  T+FV     +  G+   FAHGGSG+++S A V +++ ++ + +V +   C     GD  + LC++  R     H+ C+  +
Sbjct:   17 WKDDAVKFLPAIGLLHRTFPDADWYIIADDDIYFFTENLHHTLS------KFNPTDVHYMGIPTLFVGCDGVQKFGEGPAFAHGGSGILMSKAAVAKVLTVLDKCIV-KYHTCWA---GDITVALCMRDFR---YPHNPCIRPI 147          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: KNE61737.1 (hypothetical protein AMAG_06538 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-7
Identity = 42/145 (28.97%), Postives = 70/145 (48.28%), Query Frame = 0
Query:  227 WQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQEGRLQ-GQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQG---TGYGDGDLGLCIKVLRGVSVRHDACLH 368
            W+G  +++LP +  +  A+P + WY+ VDDD++LI  NL   L+      K   +   Y G+     P  G +     + FAHGG+G+VLS A ++ +     + +V  +    G    G+   D GL  K +   +V H+   H
Sbjct:  322 WRGDANKFLPGLMAMHEAYPDSPWYIFVDDDSYLIMENLHFHLT------KLDPQTPYYFGQAFLAGPCPGGISYKDHIVFAHGGAGIVLSNAGMKVLAKHADQCMVSYKTCWAGDVRVGHCMRDAGLPYKDVTEGNVFHNVAPH 460          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: KNE70644.1 (hypothetical protein AMAG_15400 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-7
Identity = 42/145 (28.97%), Postives = 70/145 (48.28%), Query Frame = 0
Query:  227 WQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQEGRLQ-GQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQG---TGYGDGDLGLCIKVLRGVSVRHDACLH 368
            W+G  +++LP +  +  A+P + WY+ VDDD++LI  NL   L+      K   +   Y G+     P  G +     + FAHGG+G+VLS A ++ +     + +V  +    G    G+   D GL  K +   +V H+   H
Sbjct:  228 WRGDANKFLPGLMAMHEAYPDSPWYIFVDDDSYLIMENLHFHLT------KLDPQTPYYFGQAFLAGPCPGGISYKDHIVFAHGGAGIVLSNAGMKVLAKHADQCMVSYKTCWAGDVRVGHCMRDAGLPYKDVTEGNVFHNVAPH 366          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: XP_005706381.1 (hypothetical protein Gasu_28570 [Galdieria sulphuraria] >EME29861.1 hypothetical protein Gasu_28570 [Galdieria sulphuraria])

HSP 1 Score: 65.9 bits (159), Expect = 3.700e-7
Identity = 39/124 (31.45%), Postives = 58/124 (46.77%), Query Frame = 0
Query:  235 LPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFV--------TPQEGRLQGQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGL 351
            LP +  L   FP AEWY+++DDDTF+   NL   L E         +   Y G    V           E +     + FAHGGSG++LS+  ++ +VP I   +    ++ QG  +GD  + L
Sbjct:  232 LPGLVTLYNTFPDAEWYIMIDDDTFIFLDNLAQFLLEYSSNISSPLDVPFYFGNPFSVGIPSNNETWEDEEKSSSASISFAHGGSGILLSSKALKTIVPHIPWCM----KKWQGCPHGDARVAL 351          
BLAST of NO17G00570 vs. NCBI_GenBank
Match: XP_015273452.1 (PREDICTED: chondroitin sulfate synthase 1 [Gekko japonicus])

HSP 1 Score: 65.9 bits (159), Expect = 3.700e-7
Identity = 54/195 (27.69%), Postives = 95/195 (48.72%), Query Frame = 0
Query:  170 LAIGVISGPQLAQKRRVRLLQDTWFTSLDSQRDGVLVF--SDGADAT--VPAVGIPGTGSTWQGAQDRWLPAVTYLSMAFPKAEWYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQE-GRLQGQM-LPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGLCIKVLRGV 359
            L +GV++  +  Q R V  +  TW +++     G +VF  S+G+DA+  +P V +PG   ++   +  ++           K EW++  DDD ++    L++ L            E +++G+T   T +E G+L  +    F  GG GV++S  ++R MVP I     GE  R   T + D ++G C++   GV
Sbjct:   37 LFVGVMTAQKYLQSRAV-AVHRTWSSTI----PGKVVFFSSEGSDASLPIPIVSLPGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYVKGDKLESFL------RSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHI-----GECLREMYTTHEDVEIGRCVRRFAGV 215          
The following BLAST results are available for this feature:
BLAST of NO17G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
XP_005713068.11.200e-1026.27unnamed protein product [Chondrus crispus] >CDF332... [more]
ORZ33920.11.500e-833.59hypothetical protein BCR44DRAFT_118307 [Catenaria ... [more]
XP_006676392.12.600e-829.84hypothetical protein BATDEDRAFT_85009 [Batrachochy... [more]
XP_005703461.13.400e-828.18hypothetical protein Gasu_55110 [Galdieria sulphur... [more]
ORX43262.19.800e-828.96hypothetical protein BCR36DRAFT_415674 [Piromyces ... [more]
ORZ37435.11.300e-729.86hypothetical protein BCR44DRAFT_1430228 [Catenaria... [more]
KNE61737.12.200e-728.97hypothetical protein AMAG_06538 [Allomyces macrogy... [more]
KNE70644.12.200e-728.97hypothetical protein AMAG_15400 [Allomyces macrogy... [more]
XP_005706381.13.700e-731.45hypothetical protein Gasu_28570 [Galdieria sulphur... [more]
XP_015273452.13.700e-727.69PREDICTED: chondroitin sulfate synthase 1 [Gekko j... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004773NSK004773Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00570.1NO17G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654544gene_7829Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00570.1NO17G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00570 ID=NO17G00570|Name=NO17G00570|organism=Nannochloropsis oceanica|type=gene|length=1584bp
ATGAACCCAGCATCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCACCTCCTCCTCCTCCTCCTCCACGGTGTCACGGCGGGCC
TCGGTCGTTGTCGCGGCGGACGTCGCGGACGTCTCGGACGTCGAACATGG
CCAGCAACAGCAACCCCAGCAGCATCACCAAAACAAACAGCACCGCCCGC
GACACTCCTACCACCACCACCAGTACTACCAGCACGAGCAGAAGAAGTAC
GACGTTTGTCACAATAAGGTGCGTCCTTTCTCAACACGCCAGCAGCAGCA
ACGACTGGCAGTCGCACTCCTCCTAATCCTCCTTCTCCTCGGCATGGTCA
AATGGTTCCGGCTCTTTCCGCCTATCTCCAGCATTGCCTCGTCCTCTATC
GCCTCCTCCATCTCATTGCCCTACACCTTGGCCAGCAACGGCCCCCATGC
CACGGGTCTCGCCATCGGGGTGATAAGTGGTCCTCAACTCGCCCAAAAAC
GTCGTGTTCGCCTCCTGCAAGACACCTGGTTCACCTCGCTTGACTCTCAA
AGAGACGGTGTCCTCGTATTTAGCGATGGGGCGGACGCAACAGTTCCAGC
AGTAGGCATTCCAGGGACGGGTTCCACATGGCAGGGGGCGCAGGATCGGT
GGTTGCCAGCTGTGACATATCTATCAATGGCTTTTCCCAAGGCAGAGTGG
TATGTCTTGGTGGACGACGACACGTTTTTGATTCCCAGCAACTTAAAGGC
AATGCTTTCAGAACAGAAAATAAAAAATAAAAAGAAGGGGGAAGAGGAAA
TATACATAGGACGGACGATGTTTGTCACGCCGCAGGAGGGGAGATTGCAA
GGTCAGATGCTCCCCTTTGCCCATGGGGGATCGGGGGTGGTGTTGTCCGC
GGCGTTGGTCAGGGAGATGGTACCTTTAATTATGGAGGTATTGGTGGGAG
AGAGAGAGAGGTGTCAGGGGACGGGGTACGGCGATGGGGATTTGGGATTG
TGTATCAAGGTGTTGCGAGGCGTGAGTGTACGGCATGACGCGTGCTTGCA
TGCATTGGGTCCGAAGGGCTCGTATGAAGGCCAGGGAGGAGGGGAGGAGG
TGGGATGGTTTGGGGATGGGGGAAGGCCGTGCTCGTTTCATTATGCCTTC
GGGGAGGACAGGGAGAGGGGGAATGGAGAGAAGGAGCGAGGGAGGGAGGA
GGGTAGGGTAGAAGGGGGGAAAGATGGGGCGGGTGATGAGCAGATTCGGG
CGTGGCATCAGAGGTACAATGTCGAGGAGTGAGGGAGGTGATTGTAAATA
TAGAAATGCATGTTGGTGGCAAGATGAGGTGAAATATGACAGCGCGTAAG
TAAAATAAAGCGATCAATTAAAGAGGTGAGACTTGATTCAAAAATGAGTA
TATTTGTGGCAATGAGAGTTTTCTTGTTCTTTTTATTTTTCTTCTTTTTC
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTT
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protein sequence of NO17G00570.1

>NO17G00570.1-protein ID=NO17G00570.1-protein|Name=NO17G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MNPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTSSSSSSTVSRRA
SVVVAADVADVSDVEHGQQQQPQQHHQNKQHRPRHSYHHHQYYQHEQKKY
DVCHNKVRPFSTRQQQQRLAVALLLILLLLGMVKWFRLFPPISSIASSSI
ASSISLPYTLASNGPHATGLAIGVISGPQLAQKRRVRLLQDTWFTSLDSQ
RDGVLVFSDGADATVPAVGIPGTGSTWQGAQDRWLPAVTYLSMAFPKAEW
YVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQEGRLQ
GQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLGL
CIKVLRGVSVRHDACLHALGPKGSYEGQGGGEEVGWFGDGGRPCSFHYAF
GEDRERGNGEKERGREEGRVEGGKDGAGDEQIRAWHQRYNVEE*
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Synonyms
Publications