NO17G00550, NO17G00550 (gene) Nannochloropsis oceanica

Overview
NameNO17G00550
Unique NameNO17G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3248
Alignment locationchr17:200671..203918 -

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Properties
Property NameValue
DescriptionCleavage and polyadenylation specificity factor subunit 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:200671..203918 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
Homology
BLAST of NO17G00550 vs. NCBI_GenBank
Match: EWM21170.1 (cleavage and polyadenylation specificity factor subunit 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 611.7 bits (1576), Expect = 4.100e-171
Identity = 312/459 (67.97%), Postives = 359/459 (78.21%), Query Frame = 0
Query:  470 MGMSKK-AAVGVIDPRLIKTGERLTDFTSAKEEFLGGPPLPGVLAGGHQVFIVGGAPFGITSVLPLQPFERGLAM---XXXXXXXXXXXXXXXXXXXXXXDRFGKTMPSPAAFLPPLPEGSTGSYLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHARPGAVARAGAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGWRAGRKKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            +G SK+  A   +D  L KTGERLTDFTSAK E+LGGPPLP V AGGHQ+FI+GGAPFG+TSV+PL+PFERGLA+                         +R+    P PA  LPP     T  YL +GTCTVRAKGEDVPSKGRLL+YRI LDPY+ L      +SPPTLTLVD+++QRSGPPTAIAQLG HIIIAAGPTLWV++FS              REKLKPIAFYDADFYVVSL+VVK L+AVTDAYHSVHLL+WHE +PAHTLEL+GKDYSPIVSAQPGGSHFVVDPPSLG++VGD+RGN+Q+LQY  ADVESRGGNRLVR+ DFHLSH++SF+QH R   V R GA   G+R+++FG+VEGGVGA+VP+EEK +RRLYALQ VMVNAL HV AFNPRGFRLVEARGW  GRKKG LDGELLWRF  L  G+QEDLASAIGTSREM+L++L
Sbjct:   30 LGASKRVGASAQVDVGLTKTGERLTDFTSAKAEYLGGPPLPAVWAGGHQIFIMGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPAD-LPPFQAADT--YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGL------TSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFS-------------AREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESL 466          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: XP_005853574.1 (cleavage and polyadenylation specificity factor subunit 1 [Nannochloropsis gaditana CCMP526] >EKU22784.1 cleavage and polyadenylation specificity factor subunit 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 544.3 bits (1401), Expect = 8.000e-151
Identity = 277/407 (68.06%), Postives = 319/407 (78.38%), Query Frame = 0
Query:  521 VGGAPFGITSVLPLQPFERGLAM---XXXXXXXXXXXXXXXXXXXXXXDRFGKTMPSPAAFLPPLPEGSTGSYLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHARPGAVARAGAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGWRAGRKKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            +GGAPFG+TSV+PL+PFERGLA+                         +R+    P PA  LPP     T  YL +GTCTVRAKGEDVPSKGRLL+YRI LDPY+ L      +SPPTLTLVD+++QRSGPPTAIAQLG HIIIAAGPTLWV++FS              REKLKPIAFYDADFYVVSL+VVK L+AVTDAYHSVHLL+WHE +PAHTLEL+GKDYSPIVSAQPGGSHFVVDPPSLG++VGD+RGN+Q+LQY  ADVESRGGNRLVR+ DFHLSH++SF+QH R   V R GA   G+R+++FG+VEGGVGA+VP+EEK +RRLYALQ VMVNAL HV AFNPRGFRLVEARGW  GRKKG LDGELLWRF  L  G+QEDLASAIGTSREM+L++L
Sbjct:    1 MGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPAD-LPPFQAADT--YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGL------TSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFS-------------AREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESL 385          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: GAY05088.1 (Hypothetical protein PINS_012899 [Pythium insidiosum])

HSP 1 Score: 208.8 bits (530), Expect = 8.000e-50
Identity = 132/356 (37.08%), Postives = 191/356 (53.65%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKM-SFVQHA----RPGAVARAG------AMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            Y+V+GT  V   GED   KGRLL+Y +    Y++ ++G   +  P L L+       G  + ++QLG H++ A G  L V+ F                ++L   AFYDA  Y+VSL V+K+ +   D Y SVH L+W E+     L+LL KDY P+       + F V    L ++ GD   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++ S ++ A     P A   AG        SQ   + + G+ EG VGA++ + E+ FRRL+ LQ VM+N L   CA NPR FR++++ G  R GR         KKG LDG +L+RF  L    Q++LA  IGT+ E+I+  L
Sbjct:   29 YVVIGTGFVGPHGEDESGKGRLLLYELDYAQYTT-AEGETSAKLPKLRLIFIKEHHHGAISFVSQLGPHVLAAVGMKLIVYEFK--------------SDQLTACAFYDAQMYIVSLSVIKDYVMYADVYKSVHFLRWREKQ--RQLQLLAKDYEPLAIT---ATEFSVAEKKLALLAGDMEENLHVMQFAPQDIESRGGQRLLRTSDFHLGVQITSMIRKATGTSNPPAAQMAGHRKHQEQPSQSQYVTLLGSSEGSVGAIMAVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGGRRTGRPDAWCKQKWKKGFLDGHVLFRFLHLDYVAQKELARCIGTTPEVIIHNL 364          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: ETI32630.1 (hypothetical protein F443_20594 [Phytophthora parasitica P1569])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: ETK73008.1 (hypothetical protein L915_20009 [Phytophthora parasitica])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: ETL26449.1 (hypothetical protein L916_19887 [Phytophthora parasitica])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: XP_008897882.1 (hypothetical protein PPTG_05899 [Phytophthora parasitica INRA-310] >ETN16772.1 hypothetical protein PPTG_05899 [Phytophthora parasitica INRA-310])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: ETO61376.1 (hypothetical protein F444_20609 [Phytophthora parasitica P1976])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: ETP02469.1 (hypothetical protein F441_20468 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
BLAST of NO17G00550 vs. NCBI_GenBank
Match: ETP30638.1 (hypothetical protein F442_20407 [Phytophthora parasitica P10297])

HSP 1 Score: 204.5 bits (519), Expect = 1.500e-48
Identity = 133/352 (37.78%), Postives = 183/352 (51.99%), Query Frame = 0
Query:  590 YLVLGTCTVRAKGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWVFSFSXXXXXXXXXXXXXXREKLKPIAFYDADFYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHAR---PGAVARA----GAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFNPRGFRLVEARGW-RAGR---------KKGMLDGELLWRFPSLPRGQQEDLASAIGTSREMILDTL 925
            YLV+GT  V   GED   +GRLL+Y +    Y +   G      P L LV     R G  + ++QLG +++ A G  L V+ F                E+L   AFYDA  Y+V+L VVK+ +   D Y SVH L+W E      L LL KDY P+  +    + F V    L ++  D   N+ ++Q+A  D+ESRGG RL+R  DFHL  ++S +   R   PG+V  A     A      + + GT EGGVGA+VP+ E+ FRRL+ LQ VMVN L   CA NPR FR+++     R GR         KK  LD  +L+RF  L    Q++LA  IGT+ E+++  L
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFK--------------SEQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNL 1742          
The following BLAST results are available for this feature:
BLAST of NO17G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21170.14.100e-17167.97cleavage and polyadenylation specificity factor su... [more]
XP_005853574.18.000e-15168.06cleavage and polyadenylation specificity factor su... [more]
GAY05088.18.000e-5037.08Hypothetical protein PINS_012899 [Pythium insidios... [more]
ETI32630.11.500e-4837.78hypothetical protein F443_20594 [Phytophthora para... [more]
ETK73008.11.500e-4837.78hypothetical protein L915_20009 [Phytophthora para... [more]
ETL26449.11.500e-4837.78hypothetical protein L916_19887 [Phytophthora para... [more]
XP_008897882.11.500e-4837.78hypothetical protein PPTG_05899 [Phytophthora para... [more]
ETO61376.11.500e-4837.78hypothetical protein F444_20609 [Phytophthora para... [more]
ETP02469.11.500e-4837.78hypothetical protein F441_20468 [Phytophthora para... [more]
ETP30638.11.500e-4837.78hypothetical protein F442_20407 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004772NSK004772Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00550.1NO17G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600197gene_7831Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100111g15gene9255Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00550.1NO17G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00550 ID=NO17G00550|Name=NO17G00550|organism=Nannochloropsis oceanica|type=gene|length=3248bp
ATGGAGGGAGAGGGGGGAAGAAGGCGGCAGGAGCAGCAGCAGCAGCAGCT
AGTGGTGGAAGATGGGGGGGGGGAGGAGGGCTGGAGGGAGAAAGGAGAAG
ACGAGGACGAGGACGAGGCGGAGGACGAGGATGACGGCGTGATCCTCCTC
AGTGTATGCCGCGCAGACGGGACTCTGGAAATTCTCCTCCTTCCCGACCA
AAAATACCCCCTCCTCCCCCCCTCCCTCCCCTCCTCTGACCCCCATCTCC
TCTTTTCCTCGTCCCGGTGTGCTGACGGGCCGCGGGTGCTTCGTAATGCC
CTCCTGTTCACAGACATGAGATTCCGCCCCGGTCGACGGGGAGGAGCGAC
AGCAAGAGCAGCAGAAGCAGGAGGAATGGCTGTAGGAGGGACGGAGGGAG
GAGTTGGTGCTTACTCCTATCCCACCATCAAGGAGATGTCCATCGCCGTG
GTGGGCCCTGCGTCGGAGGAGGGGGAAGGGAAGGAAGGGGGGCTGGAGGG
AGGGATGTCAAAGGCAGCAGCAAGGATTCTGGAGCGATTGTGTGTCGTGC
TGTGGACATCGGAAGATGACTTATTGGTGTACGTGGCTCGGCCCCTTACG
GGTGCTACAGCAGCAGCACCAGGAGGAGGAGGAGCAGGAGCAGGAGCAGG
AGGAGAGGGAGGGAATGGGGTGAGGCCATTGCCCTTTTCCCTTCTTCGCC
TCCCTCACGATGTTATCACCCGCCAACCGCGTCACGCAGCCCCTGCCCCT
AACCGCCCCCCCCTCCACAAGCGTCTGTTTCCCTTTCCTTCCTCCACCCC
GTCCTCCCCTGTTTCTTCCTTTACCGCCGCCGTGGGCAACCAACGAGGAG
TTTTCATCGGGGGCCTTACTCCTGCCTGGCTACTCTGCGAGAGGGGCACC
GTCAAAATCCTCTTTGCTGGCCTGCGCGATCCCTATGCCGCACCCATCCA
TTTCCCTCCCTCTTTGAGCAAGGGGAAAGGGAAAGCCGTTGCTCCTCCCC
CTCTTCCTCCCTCCCTTCCTCCACACCCGCATGTCTCGGCGTTTCACCCG
TTTCCGGACGCCCCTTCCGGGTATTTGATTGCGCATAATGGGAGTCAAGG
GCACGCGTGCCTATCCCTGGCTATGGCTGATCTAGgtaagaaagctttgc
ggaggcgcggattttgaaagaggttaagggagggaggaagggaaggagga
agggaccagatacatgtccatatatacatgatatatcagtcatgttagcc
atataagtcgtaccagttattaattagctatttctcatccctccatcccc
gtatcacaaccgcaatagGGGGCACCTTGGGCTACACCTCTCCTTCTGGC
GCCGTTACGGGCGCCAGCGTCACCTTCCGTCGTCTCGGTCCCTTGGGACA
TGAAGCCAAGAAAATTGTCGCGCTTGAAGGTCTCCCCACCCTCGTTCCAT
ACTATGCAGTTGTGGTGGGAAGGGGGGAAGGAGGTCGGGCGGAGGATGAG
GCGGAGGAGGAGGGAGAGGGCGGAGTGGGTGGGGTGCCCGGAGTGGTCGT
GGAGGAGGAGGAGGATGAGGAAGACGAGGAGAGACAGAAAATGGGTATGT
CGAAGAAAGCGGCGGTGGGTGTGATAGACCCGCGGCTGATTAAGACAGGG
GAGAGATTGACTGATTTTACCTCAGCAAAAGAGGAGTTTTTGGGGGGTCC
ACCGTTGCCTGGTGTGTTGGCGGGGGGTCATCAGGTCTTCATCGTAGGAG
GGGCGCCGTTTGGAATAACGTCTGTTCTGCCGTTACAACCGTTTGAGCGG
GGGCTTGCCATGATGATGTACCACTCCAAGCCTGACGCTACCCCTCCTCA
CCATCAACACCACCACCACCACCGTAGTGACCGTTTCGGGAAAACAATGC
CGTCTCCTGCAGCCTTTCTTCCCCCCCTTCCCGAAGGTTCCACCGGGAGC
TACCTAGTCCTGGGAACATGCACGGTGCGGGCAAAGGGAGAAGACGTTCC
CTCCAAGGGGCGACTACTTATCTACCGCATTATGCTAGATCCTTACAGTA
GCCTCAGTAAAGGCGGTGGCCCTTCCTCTCCCCCGACTTTGACCTTGGTG
GATGAATTTACTCAACGTTCAGGTCCGCCCACCGCGATAGCCCAATTGGG
ACAACACATTATTATTGCCGCTGGGCCTACCTTGTGGGTGTTTTCCTTTT
CCGCTGCAGGCGGTGGTGGAGGAGAGGGAGTGGTCGGGGGAGGGAGGGAG
AAGCTGAAGCCGATTGCGTTCTATGATGCCGACTTCTACGTGGTGTCGTT
GAAAGTTGTGAAAAATTTGATTGCCGTAACCGATGCTTACCATTCTGTCC
ATTTATTGAAGTGGCACGAGGAGAACCCGGCGCACACCCTAGAGCTGCTG
GGGAAGGATTATTCGCCCATCGTTTCAGCGCAGCCGGGAGGGTCCCATTT
TGTTGTGGACCCCCCGTCCTTAGGCGTGGTGGTGGGGGACAACAGGGGTA
ACGTCCAGATGCTGCAATACGCCCAGGCGGATGTGGAGTCGAGGGGAGGG
AATCGCTTGGTCCGAAAGGTTGATTTCCATTTAAGCCATAAAATGAGTTT
TGTCCAGCATGCTAGGCCGGGCGCGGTGGCAAGGGCAGGGGCAATGAGCC
AGGGACTGAGATTGTTGATGTTTGGAACCGTGGAGGGGGGGGTGGGAGCG
ATGGTGCCGTTGGAGGAGAAGGCATTTAGGCGGTTGTATGCGCTGCAGGG
GGTGATGGTGAATGCGTTGATGCACGTATGTGCATTTAATCCCAGAGGTT
TCCGATTAGTGGAGGCGAGAGGGTGGAGGGCGGGAAGGAAGAAAGGGATG
TTGGATGGGGAGTTGTTGTGGCGCTTTCCAAGCCTCCCGAGGGGGCAGCA
AGAGGATTTAGCCAGCGCAATAGGGACCAGTCGGGAGATGATTCTTGACA
CCCTGCTGGAGgtagacatgatgacgtggaccttgtaggtgcccttccct
tttccctcctatcttcccagCAGCAGCGGCAGCAGCAGCAGCAGCGGCAG
CAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCA
GCAGCAGGAGGATGACTCCGCGAGCGCGATGAAGGCGGGTCGGCCTTTAT
TTCTTGGTGCATGTCGAGGTTCTATGACCACCTGGATTTTGTCGAGAAGG
AGGAAGGGAGGGAGGGAGGAAGCGATAGAGATTGAAAATAGTAAATAA
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protein sequence of NO17G00550.1

>NO17G00550.1-protein ID=NO17G00550.1-protein|Name=NO17G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1002bp
MEGEGGRRRQEQQQQQLVVEDGGGEEGWREKGEDEDEDEAEDEDDGVILL
SVCRADGTLEILLLPDQKYPLLPPSLPSSDPHLLFSSSRCADGPRVLRNA
LLFTDMRFRPGRRGGATARAAEAGGMAVGGTEGGVGAYSYPTIKEMSIAV
VGPASEEGEGKEGGLEGGMSKAAARILERLCVVLWTSEDDLLVYVARPLT
GATAAAPGGGGAGAGAGGEGGNGVRPLPFSLLRLPHDVITRQPRHAAPAP
NRPPLHKRLFPFPSSTPSSPVSSFTAAVGNQRGVFIGGLTPAWLLCERGT
VKILFAGLRDPYAAPIHFPPSLSKGKGKAVAPPPLPPSLPPHPHVSAFHP
FPDAPSGYLIAHNGSQGHACLSLAMADLGGTLGYTSPSGAVTGASVTFRR
LGPLGHEAKKIVALEGLPTLVPYYAVVVGRGEGGRAEDEAEEEGEGGVGG
VPGVVVEEEEDEEDEERQKMGMSKKAAVGVIDPRLIKTGERLTDFTSAKE
EFLGGPPLPGVLAGGHQVFIVGGAPFGITSVLPLQPFERGLAMMMYHSKP
DATPPHHQHHHHHRSDRFGKTMPSPAAFLPPLPEGSTGSYLVLGTCTVRA
KGEDVPSKGRLLIYRIMLDPYSSLSKGGGPSSPPTLTLVDEFTQRSGPPT
AIAQLGQHIIIAAGPTLWVFSFSAAGGGGGEGVVGGGREKLKPIAFYDAD
FYVVSLKVVKNLIAVTDAYHSVHLLKWHEENPAHTLELLGKDYSPIVSAQ
PGGSHFVVDPPSLGVVVGDNRGNVQMLQYAQADVESRGGNRLVRKVDFHL
SHKMSFVQHARPGAVARAGAMSQGLRLLMFGTVEGGVGAMVPLEEKAFRR
LYALQGVMVNALMHVCAFNPRGFRLVEARGWRAGRKKGMLDGELLWRFPS
LPRGQQEDLASAIGTSREMILDTLLEQQRQQQQQRQQQQQRQQQQQQQQQ
LQQQQEDDSASAMKAGRPLFLGACRGSMTTWILSRRRKGGREEAIEIENS
K*
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Synonyms
Publications