NO17G00540, NO17G00540 (gene) Nannochloropsis oceanica

Overview
NameNO17G00540
Unique NameNO17G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4832
Alignment locationchr17:196030..200861 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:196030..200861 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00540.1NO17G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00540.2NO17G00540.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170363gene_7832Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00540.1NO17G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00540.2NO17G00540.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00540 ID=NO17G00540|Name=NO17G00540|organism=Nannochloropsis oceanica|type=gene|length=4832bp
CCAAACCTTACACTTCTAAGGAAACAATAGAAATGGGAAAAAATGGGAAT
GGGGTTGCTTGCTTTCGTTTCATTTTGGGTGTTGGAGAGGGCGGAGCACT
AGGCAAGAGCAAAGAAAATGCCAGGCGTACACTCTCTATACCGAAAGCAA
AGTTGAAATCGGCTCGCTTCTCCACCCCCTAAACACCTCACCCTTTCCCT
CCAACAAGTACGCGGCAGACGAAGCGCCGATACTCAAGCTGCCAAAGCCA
CCATGTTTGGCAAGGCAAACTTGACGCGGTTGAGCGATCTTCTAGATGgt
acgtcttgtcttgaattacagtgctcctgctccgtttccctcttgcttgt
cgccctccctcttacttgccgcccttctcttgccgccctccccttccgtt
ccattccccctgcttgtctgtactgggtattccccttgctctaacactct
ctctaccgttggcttttcctctcctttttcccggcctcatttcattttag
ttatgccttcccccccctcccccttgccattcccgctcgttcctccttcc
ctgtgctactcctccttcaatcgccgctttctatctttctctcctttccc
ttatcctttccccctttcccatacatacaaatctctcctcctctgactat
tttttactttcgatcaccatccctccttcaactttgactcctatcccttc
acagACCCCGAGATCCCTGGCCCGGGCACATACGTGCACAACGCTAGTGG
CAACCTCTCCGCGAGCCTACACTCCTCCTCCCAACGCTTCAAATCCGACC
ATCATGATTACGATCACCACCAGCACCATCAGCAGCATGACCACTCGTCT
TCCTCCTGCCTCAGTATGTCGTCAATTTCCGACGCAGACACAGCTTCCCG
CCTCCTTGCCTCGCGGAGTGCCCCGGCTCTTCACCTGACCCGGCACCGGC
AGCCACACCACAACCCGCTCCTTTCTACGAGACAAGGAGGAGGGGGATCA
GGAGGAGGAGGGAGGGACGGAGGGCGGGAAGGTGGGCATTGTGGCAGTAT
GCGATTCTCGCTGTCGGATGCCAGCTTGAGGGATGCGGTGGTGAGGAGGA
AGCAGAAGGATTTTGAAGCGAAGGAGAAGGTGATGGGGAGGGAGGGAGGG
AGGGAGAAAGGGAAAGAGGAACGGAGCGACACGATTTTGGGATCATTGGA
AGGCGAGGTGAAGGCCTTGCGAGAGGAGAAAGAGGCGGTGTTCCAAGAGC
TCGAGCGAATGAGGgtaaggaggagggatggagagagggaggctgatgta
cgtcgtcccttacgttaaccttttgtggtgtttttcgttcctttcacgcg
ttacgccctccctctccctcttccttcccttctccctcctcagTCGTTTG
AGAGCGAATGCGAGCAGCTGTCGCGAGAGATGGAGCGAATGAAGGCACGC
CTGGTGGAGGTGGAAGGAGGGCGGTCACGTGCTCTAGCGGACTTAAATCG
GTACCTGGACGAGGTGGAGGCCGTGGCGGGGGACTTGATGGAGAGCGAAA
GGACGATCCAGGAGgtgagggagggagggagggagggagggagggaggga
gggagagactgtatgaaagggcgctcgggcttggtcaagggtaaagcagt
cgccggatggatggcacccttccctcccccggcctcacctttcctcccca
ctgccccccctccctccctccttcaagCTGACGTCCCTTCTGGGGGTCTC
CAGGCACGAGAACGAGGAGCTTCGCGAGGAAAAGACTTTGTGGCACGTCG
AGATAAACAGGCTCCAGCGTGCGCTGGGGCAGACGCAGGAGGAAGGGCAC
ATTTGCCGGCGTCAGgtagggagggagggagggagggagggagggaggga
gggggggagggagggatacgtatgtcatgcaaatgatgggaaagtcggtg
accggcaagctttctcatgcctcttctcctctccctccctccctccctcc
ctccctcgtatttctgcagGTGGAGGAGCTCCTTACCCGTGCCGAGGAGG
AGGAGGAGGAACGGAGGGAAGTCATGGCGGAGATGACGCGGACCCGACAG
CAGCTACAGCAGCAGGAGGAGGCATGCAAGGGGCTAGAGGAGGAGAGGGA
GGGGTTGAGGGGCAAGGTGGCGCGCTTGGAGTTGGAGGTCTTTGAGACCC
AGgtgagggaaggagggagggagggagggagggagaaggaggaagaaagg
agtccttgggtcacgatagcattgatgaaaaagagacgcttactcctcta
ctttcattctctccctcccttcttccccccctcgccccctcctacttccc
tagAACGATGCCGAAGACCAATTCAGCAAATGTGAGCTGTGGCAGCGAAA
ATGCACCCACCTCCAAGACTCTCTGAAGCAAGAAACAGCAGCCAAGGAGG
AAATGAGTGATGTTTTGACGCGAGAGAAGGAAGAAAGGGAGTTAGAACAG
GAAAGACGGAGGGCGTTGGAGAAGGAGGTGATCTTACTGCAGAGAAATAA
TGAAGGGTTGTGGTCTCGTGTAAAGATGGCGAGGGAGGAAGGGAGGGAGG
AAGGGAGGGAGGAAGGGCAGAGGGAGGTAAATGCGATGAGGGCAATGGTG
GAGGAGACAAGGAAGGAGGTGGAGGAGGAAAGGAGGAGAAGAGAGGAGAG
TGAGGAGGCGAGACGGCTCGAAGGGGAGGGACAAGGATGGGAGGAAGAGA
GGAATGAGCTGGCGGCCCATGTGGTGCTGTTGGAGAAACAGGTGAGGGAG
CAGAAAGGGCGAAAGGATGCGGAGCAGGAGGTTATGGTGGGACTGCGTGC
GACGAATGGTCGGTTGAAGGAGCAAACGCAAGCCATGGTAAAAGAGCGCG
AAGGGATGAAGGAGGCGCTGGCATCGCTACAAGCGGCGGTGGTTGGAATG
AAGGAGGAGGGGGAAAGGGAGAAGTGGAAGCTGACCGAGTGCTTGAAAGA
TATCAAGACAGAATTGAAGCGGAGAGAGAAAGTGGCAGTGGCTCACATCA
AGgtatgtcttagagagtgggattgtcgcatgtcatgtttgatttttatc
tctcccaactccccctccctccctctggctctgttttcagatgccacggt
cattcttccgccccccttataatccttccttctctctcttaaaatgatgg
cactcttgtaagaccactggttcgccattacttaagctctctctttccct
ctgtccctccttccgtcccaccctccctcccttccctcctttaagGAGCG
GGCCCTACTGGAAGATCAACGCCTGGCCTCCTCCCAGGCCTACCACCGCG
CCACGAGCCGGTGCGAGGAACTGGCCGAGGAAGTGAGGGAGAGCGAGGAG
GAGATCGCTGCCCTTCGACGGGTGCTCGAGGAAAAGCTGGCATTGCAGAG
GAGGGTATTTATGTTGGAGGAGGAGTTGAAAGAGGGAGGGAGGGAGAGGG
CGGGGTGGGAGGTGCGGGCCATCAAAGCAGAGAAGGAGCTTGAGAGCCTC
AGGAAGACGATGCAGGAGGTGGGAGGGATGGAGGGAGGGTTATTGGTGGC
GACGCTGGAAAGGCAGGTGCAGCAGCTGGAGGAGGAGGGGTGGGAGAGGG
AGGTTGCAGCGATGACGAAGGAAGTACGGGCCTTGGCTGGCGTGACGGAG
CATCAAAACGGAAAGCAGCGGGTGCAACAAGAGGAGAAGATGAAGGGGAC
AATAAAAAGGTCGCCTTTCAAAGAGCTTTTATGGGCCGCTGCTGCTGTTG
CCCCTGCAGCTGCTAACTCTCTTTCTGACACTGAGAGTGCGTGGCAGCAG
CAGCAGTCGCAGCAGCAGTCACAGCAGCAGAGGTCTGTCTTGTCATCATC
ACGGAAGGGGGAGGGCTTGTTTTCTCCACCCATGAGTGACGACAGAGCCG
GTTATAGGGGAAAGCAGCAGCAGCAGCAACAACAACCAGGGCGGCAGCGG
CGTCTCGAGACTCCTTGCCCGGCATTTGCGATCGCGTGCGACGAAAAGGA
AGAGGAGGAGGAGGAGGAGAAGGAGGACCAGGAGGACCAGGAGGACCAGG
AGGAGGATGAGGGGGACTTTGAAGGAGGAAGCGACAAGGAGAATCCAAAA
GTGGATGACGCGCTAGTCCAGCAATTGCTTGGCTCTGCACGAAAACACCA
ACTGCAACAGGATGAGGAGAGGGCGCGAGAAAAGCAGCAGCAGCAGCAGC
AGGTGGATGAGGATGTGAAGCTCAAGTCTTTGAGTGGCCTAGGTTGGAAA
GGAGTGGAGGCCGACAAGGAGAATCTCGTCAATTGGATCCTCACGTCCCC
GGGGCTCGAGCCCTTCAAGCAGCAGCAGCAGCATCAATACCGGCAAGGGG
GTGCGCGAGAACGGAGGCTATAATTTTGTGGGCTTCATTTTGGTTCGAGG
GTGGGGAAGATCAGAGAGGGACTTGCAGATATGTACCTTCTCTAGAAGTG
CCTCATGTCATTCAAAACGAAGCACGAATGTAAATAAAATGACGAATCGA
GAGCAAATCGACTTTTAACTTTCAAATGTGTCTCAAACGCCCGTTTTTGG
GGACTAGTTACGCTTACCCTCATTTTCTTATTTCCATTCATTTATTTACT
ATTTTCAATCTCTATCGCTTCCTCCCTCCCTCCCTTCCTCCTTCTCGACA
AAATCCAGGTGGTCATAGAACCTCGACATGCACCAAGAAATAAAGGCCGA
CCCGCCTTCATCGCGCTCGCGGAGTCATCCTCCTGCTGCTGCTGCAGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCT
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protein sequence of NO17G00540.1

>NO17G00540.1-protein ID=NO17G00540.1-protein|Name=NO17G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=975bp
MFGKANLTRLSDLLDDPEIPGPGTYVHNASGNLSASLHSSSQRFKSDHHD
YDHHQHHQQHDHSSSSCLSMSSISDADTASRLLASRSAPALHLTRHRQPH
HNPLLSTRQGGGGSGGGGRDGGREGGHCGSMRFSLSDASLRDAVVRRKQK
DFEAKEKVMGREGGREKGKEERSDTILGSLEGEVKALREEKEAVFQELER
MRSFESECEQLSREMERMKARLVEVEGGRSRALADLNRYLDEVEAVAGDL
MESERTIQELTSLLGVSRHENEELREEKTLWHVEINRLQRALGQTQEEGH
ICRRQVEELLTRAEEEEEERREVMAEMTRTRQQLQQQEEACKGLEEEREG
LRGKVARLELEVFETQNDAEDQFSKCELWQRKCTHLQDSLKQETAAKEEM
SDVLTREKEERELEQERRRALEKEVILLQRNNEGLWSRVKMAREEGREEG
REEGQREVNAMRAMVEETRKEVEEERRRREESEEARRLEGEGQGWEEERN
ELAAHVVLLEKQVREQKGRKDAEQEVMVGLRATNGRLKEQTQAMVKEREG
MKEALASLQAAVVGMKEEGEREKWKLTECLKDIKTELKRREKVAVAHIKE
RALLEDQRLASSQAYHRATSRCEELAEEVRESEEEIAALRRVLEEKLALQ
RRVFMLEEELKEGGRERAGWEVRAIKAEKELESLRKTMQEVGGMEGGLLV
ATLERQVQQLEEEGWEREVAAMTKEVRALAGVTEHQNGKQRVQQEEKMKG
TIKRSPFKELLWAAAAVAPAAANSLSDTESAWQQQQSQQQSQQQRSVLSS
SRKGEGLFSPPMSDDRAGYRGKQQQQQQQPGRQRRLETPCPAFAIACDEK
EEEEEEEKEDQEDQEDQEEDEGDFEGGSDKENPKVDDALVQQLLGSARKH
QLQQDEERAREKQQQQQQVDEDVKLKSLSGLGWKGVEADKENLVNWILTS
PGLEPFKQQQQHQYRQGGARERRL*
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protein sequence of NO17G00540.2

>NO17G00540.2-protein ID=NO17G00540.2-protein|Name=NO17G00540.2|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp
MERMKARLVEVEGGRSRALADLNRYLDEVEAVAGDLMESERTIQELTSLL
GVSRHENEELREEKTLWHVEINRLQRALGQTQEEGHICRRQVEELLTRAE
EEEEERREVMAEMTRTRQQLQQQEEACKGLEEEREGLRGKVARLELEVFE
TQNDAEDQFSKCELWQRKCTHLQDSLKQETAAKEEMSDVLTREKEERELE
QERRRALEKEVILLQRNNEGLWSRVKMAREEGREEGREEGQREVNAMRAM
VEETRKEVEEERRRREESEEARRLEGEGQGWEEERNELAAHVVLLEKQVR
EQKGRKDAEQEVMVGLRATNGRLKEQTQAMVKEREGMKEALASLQAAVVG
MKEEGEREKWKLTECLKDIKTELKRREKVAVAHIKERALLEDQRLASSQA
YHRATSRCEELAEEVRESEEEIAALRRVLEEKLALQRRVFMLEEELKEGG
RERAGWEVRAIKAEKELESLRKTMQEVGGMEGGLLVATLERQVQQLEEEG
WEREVAAMTKEVRALAGVTEHQNGKQRVQQEEKMKGTIKRSPFKELLWAA
AAVAPAAANSLSDTESAWQQQQSQQQSQQQRSVLSSSRKGEGLFSPPMSD
DRAGYRGKQQQQQQQPGRQRRLETPCPAFAIACDEKEEEEEEEKEDQEDQ
EDQEEDEGDFEGGSDKENPKVDDALVQQLLGSARKHQLQQDEERAREKQQ
QQQQVDEDVKLKSLSGLGWKGVEADKENLVNWILTSPGLEPFKQQQQHQY
RQGGARERRL*
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Synonyms
Publications