NO17G00520, NO17G00520 (gene) Nannochloropsis oceanica

Overview
NameNO17G00520
Unique NameNO17G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2205
Alignment locationchr17:190357..192561 +

Link to JBrowse

Properties
Property NameValue
DescriptionDi-glucose binding protein with kinesin motor domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:190357..192561 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008017microtubule binding
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0003774motor activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Homology
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BLAST of NO17G00520 vs. NCBI_GenBank
Match: EWM21175.1 (di-glucose binding protein with kinesin motor domain protein [Nannochloropsis gaditana])

HSP 1 Score: 129.8 bits (325), Expect = 3.500e-26
Identity = 77/162 (47.53%), Postives = 102/162 (62.96%), Query Frame = 0 
Query:    1 MKNLERELKVVKDELKAKEXXXXXXXXXXXGMKKDYVAVQKKLNLLIETKGRNSEEMRRGWEEQLSALRTANQTLTTRWHVEKCAKEKVGNELEEAQKMIRRLQQHTESRGEHLKAAKMQLREKDEEVSXXXXXXXXTERELSRATALFSASSCPSSTTIIA 163
            +KNLEREL+V++ +L AKE             +K+   +Q+++  L E KGR  EE RRGWEEQL A R++N+ LTTRW  EK A+EK+  +L+EAQKMI+RLQQHTE+RG  L   + QLR+K+EEV           RELS   A  +ASS P  + I A
Sbjct:  452 VKNLERELQVLRGKLMAKETEKIEAEDALSASRKELALLQRQVKSLAEAKGRVQEERRRGWEEQLKARRSSNEALTTRWQTEKTAREKLAQDLDEAQKMIKRLQQHTETRGVALTGTRQQLRDKEEEVKELKKALRSVRRELS---AAITASSLPRGSAISA 610
The following BLAST results are available for this feature:
BLAST of NO17G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21175.13.500e-2647.53di-glucose binding protein with kinesin motor doma... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00520.1NO17G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00520.1NO17G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00520 ID=NO17G00520|Name=NO17G00520|organism=Nannochloropsis oceanica|type=gene|length=2205bp
ATGAAGAATTTGGAGAGGGAGTTGAAGGTGGTGAAGGATGAGTTGAAGGC
GAAGGAAAGGGAAAAGGTCGAGGTGGAGGAGCAGCTGGTGGGGATGAAGA
AAGATTACGTTGCTGTCCAGAAGAAATTAAACCTCCTAATAGAAACAAAG
GGCAGGAACAGTGAAGAAATGAGAAGAGGATGGGAGGAGCAATTGAGTGC
GCTGAGAACGGCGAACCAGACCTTGACAACCCGATGGCATGTCGAAAAGT
GCGCGAAAGAAAAGGTGGGAAATGAGCTGGAGGAAGCCCAAAAGATGATT
CGGCGGCTACAGCAGCACACCGAGTCGAGGGGGGAGCATTTGAAGGCGGC
AAAAATGCAGCTGCGGGAGAAGGATGAGGAGGTGTCCGAGCTGAAGAAAT
CTCTGAGGAGAACCGAGAGGGAACTGTCCAGAGCGACGGCTCTTTTCTCT
GCATCTTCCTGTCCGTCTTCCACCACGATCATTGCTACTGCTCCTGTAGT
GTCCTATTCCTCGTCCTTGTTGCGGGCTTCCGCCACTGCCGCCCGAGGAG
GATTTGGGGCCGAGCGGTCTATCTCTCCTCCCGCAAGCCCTACTGCAGTC
AATCCCGTTCCAACCTCCGTCATTCACGCCTTTTCCAGGAATGGCAGCAG
CAGCACCACCACCAGGAGCAGCAGTAGCGATAGCAAGACAGGCGACACTC
TAGTAAGGCACCAACCGAAGGTCTTCTCCTCTTCCTCCTCCGCTTCTGCC
TTCCCTGCTCCTCCCTCTGTCTTGGCAGTTGTGACAGAGAAAGCGTCTGC
TTTCCCGTCATTGAGAGAGAGAGAAGGGCCATTACCACCAGCAGCAGCAG
CACGGGGAAGAGGAGCAACAGCAGGAGCTGCAACAGCAGATCTCAACAGT
TCTGGTCTGCCACAACAACAAGAGCAACAGCAGCAGTACGCAGGTGCGGT
CGTCCTACCGCTCAGCAGGAGGGGAAAGGAGGGGGAGGAGGGGGACCGAG
ACGAGTTTCCCTGCAATAGACGGACAATGGGTGATGTTGTTTCCAAGTAT
TCAAACAAGGCGAATACGGCCGTAAGCGCCACTGCCACCCCTATTTCAAT
TCCTTCCTTCTCCCCTTCGATCATCGACATGATCATTCCTGAGGAAGGGC
CGCCGTCATTCCCCTCCTCTTCGACCCCTTCCTCCCTCTCTTCCTCGTCG
TCCCCCTCAATGAAGCAATCAGGAATGATGGCAGCAGAACGGATCCCTGC
CCGGCCGCGACTAACGGGAGAGGAGGAAGGAGGGAGCGAGGGAAGGAGAG
AGGATGGTTTTGGCGGAGGGGTGTATGACAGCGTTGTGGCTTCGCCCCCT
CTTCCATCTCCGCTGCCATCTTTTCTGTCCCGTCGGTTACAATGCCAGCA
GTCGTCTGTGATCCCTCATTCGACTATTTCTGAGACTTGTCCCCCCTGTG
AAACCTCTTCCTCCATCCCTCCCTCCGTCCCTCTCTCCTCCTCCACCACC
ACCACCACCCTTCCCCTCCCGCGAATGGCCAGTATCACCACGGACAACAT
CGATAGCAGCGCCAGCAGCAGCACCACGAGCATCAATGCGCGTGATGATC
CTGAAGTAGCCACAACACGTTCGTCATCCCTATCCTCCCGAGTCCATGGC
TCTCTGCCCGTGTATGCCACTCATGACCACTTGCAACGCGCCGCCTCTGC
GACTGGTTTTGGTGGCAACAGCAGCAGCAGCAGTAGCTCTATTGGTAGAA
CGACCAGAACCAGCACGAGCCCTCTTCGTCCTCGCTTGGGGTCCCTGCGG
CCCATGTCGAGGAGTAAGCCGATGGGAGGGGGAGGAAGAGAAAGGGGAGG
GCGAGATAGAGGAGGGGGAGTCTTGCGTGTCTCTCGCTTGGCGCCACCGC
ATCGAATTGAGAAGGGTATAGCGGCGAGTGCAAGGAGTGCGGGAGGGGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAAGGGTGATGTCTACCATTCATGGAGAGGGACAGAAAGGACGGG
GCCCTGCACATGTTGGTGCGCGTTTTCCTCCGATGAGTGTGAGTGCGATA
ACCACGAAAGGAGCGAATGCTTCAGTCAGGCAACAGCAGCAGCATCATCA
GTCACAGCAGCCTGCGAAGGGGGTGAGCAAACCGTCGGTGGCGCGATGGC
GGTAG
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protein sequence of NO17G00520.1

>NO17G00520.1-protein ID=NO17G00520.1-protein|Name=NO17G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MKNLERELKVVKDELKAKEREKVEVEEQLVGMKKDYVAVQKKLNLLIETK
GRNSEEMRRGWEEQLSALRTANQTLTTRWHVEKCAKEKVGNELEEAQKMI
RRLQQHTESRGEHLKAAKMQLREKDEEVSELKKSLRRTERELSRATALFS
ASSCPSSTTIIATAPVVSYSSSLLRASATAARGGFGAERSISPPASPTAV
NPVPTSVIHAFSRNGSSSTTTRSSSSDSKTGDTLVRHQPKVFSSSSSASA
FPAPPSVLAVVTEKASAFPSLREREGPLPPAAAARGRGATAGAATADLNS
SGLPQQQEQQQQYAGAVVLPLSRRGKEGEEGDRDEFPCNRRTMGDVVSKY
SNKANTAVSATATPISIPSFSPSIIDMIIPEEGPPSFPSSSTPSSLSSSS
SPSMKQSGMMAAERIPARPRLTGEEEGGSEGRREDGFGGGVYDSVVASPP
LPSPLPSFLSRRLQCQQSSVIPHSTISETCPPCETSSSIPPSVPLSSSTT
TTTLPLPRMASITTDNIDSSASSSTTSINARDDPEVATTRSSSLSSRVHG
SLPVYATHDHLQRAASATGFGGNSSSSSSSIGRTTRTSTSPLRPRLGSLR
PMSRSKPMGGGGRERGGRDRGGGVLRVSRLAPPHRIEKGIAASARSAGGG
GGGGGGGGGGGGGGGGGGERVMSTIHGEGQKGRGPAHVGARFPPMSVSAI
TTKGANASVRQQQQHHQSQQPAKGVSKPSVARWR*
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Synonyms
Publications