NO17G00380, NO17G00380 (gene) Nannochloropsis oceanica

Overview
NameNO17G00380
Unique NameNO17G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr17:137402..138916 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:137402..138916 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G00380 vs. NCBI_GenBank
Match: EWM21187.1 (hypothetical protein Naga_100624g1 [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 6.500e-32
Identity = 125/261 (47.89%), Postives = 147/261 (56.32%), Query Frame = 0 
Query:  233 RKKQHPVPYKALANRGLDAVQTRYVLGPVDPSKVGWAGGRXXXXXXXXXXXIYARLKSALEEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFEQGLFSFYSSLGNEEEKETMLPALPLPTWEEVREGGKQGGLLLLQEGLSFARNWWAQPHVQAPVLLLDLQTPP-----GGGRGRKEGGKEGGCLCDGWRNWGAMRVSMGYGRGAWRCWGTAFMPSLP------TFLPSRCCLL----WMTGEERK 479
            R++ HP+PYKA+ NRGLDAV +RYV GP+DPSK+   GGR           +Y  L +A+++VE         XXXXXXXXXXXXXXXXXXXXXXXXXX     +  QG  S  SS   +  K  +LP+LP   W  V +G +Q  LLL+ EG  F+ NWWAQP VQAPVLLLDL  PP     G G GR         LC GWR+W     S   G GAW C  T  MPSLP      + LP R   L    WM    RK
Sbjct:   81 RERFHPLPYKAMVNRGLDAVSSRYVFGPLDPSKIQLEGGR-----EGGREGVYRVLMAAMKDVEGRERKGGWGXXXXXXXXXXXXXXXXXXXXXXXXXXGEEGKV-AQGWLSLPSSRQTKRGKGPILPSLPPSMW-HVLQGARQEALLLV-EGPLFSFNWWAQPRVQAPVLLLDLNVPPVGREMGSGGGRXXXXXXXXXLCGGWRSWAGTSASTRSGPGAWPCSATVSMPSLPPPSPYGSSLPRRTTPLRGDIWMVVGRRK 333
The following BLAST results are available for this feature:
BLAST of NO17G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21187.16.500e-3247.89hypothetical protein Naga_100624g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00380.1NO17G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100624g1gene9237Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00380.1NO17G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00380 ID=NO17G00380|Name=NO17G00380|organism=Nannochloropsis oceanica|type=gene|length=1515bp
ATGCACTTCCAAGAGTGGAAAAAAGGCTACCCGGATTGGGCAACGCCTCA
CCACGGACTGACTTACCGAGGGACTTTCATTACCAGGGAGGGCTTCGTCC
CTCTCCCCTATTCCTCCTCCTCCCCTTCCTTCCCCTCCGTCTCCTTGTCT
CCGTCCTCCCTCTTGTCGCCGGGGGAGACTATGATGGATTTAGGACCTTC
CTTTTACTGCACCCGTTTCCTGGCTTCTGCCGCCTCCCCTTTCCCTCACT
GTGTGGAACGTGTTTACCCCTCCTCTCTTCCGCCCTCCCCTCTCCCTCCC
TCCGACGCTGCTGCTGCGGCGGCTGCTGCTGCCGGTGTCACGGCGGCACA
AAGGGCGAGGAGAAGACGGGCAGAGGAAGAGCGATGGACAGAGAAGGAGG
AAGGAGAACAGATCACTCTCCTCCTCCTCCTCCCCTGCTTCCCCCCGCAT
CCTCCGCACGACACCATGCAACCCATCACAAGGGAGGAAGAGGAGGGAGG
GGGGGAGAAAGGGAAGGAGGACTTGCTCACGCAACGCCTCCTTGCCATCC
TCTCCCTCTGGCCGACCTCTGCGCCCGTCATCATCGTCACCCCCTACTCC
CCTCCTCCCTCCCTCCTTCCCTCCCTCCTCCTTCATCACCCCTTCCTCGT
CCTTCTCCCCTTCTTCGAGGAGGGGGAGGAAGGGAGGGAGGGAGGGAGGA
AGAAGCAGCATCCTGTGCCGTACAAGGCGTTGGCTAACAGGGGTTTGGAC
GCGGTGCAGACACGCTACGTGCTAGGGCCTGTGGACCCCTCCAAAGTCGG
ATGGGCGGGCGGTCGGGAGGGAGGGAAGGAGGAAGGGAGGGAGCCAGGAA
TCTATGCACGATTAAAATCCGCGTTGGAGGAGGTAGAGAGTGGAAGAGAA
GGAGGGGGAGGAGGAGGAAGGGAGGAAGGAAGGGGAGGGGGGGGAAATGC
GCTGGTGGTACCAGTCGTCGCTGCAGTAGAAGGAGGGAGGGAGGGAGGGA
GGAAGAGGCTGTTCGAACAGGGGTTGTTCTCATTCTACTCCTCTCTGGGA
AATGAGGAGGAAAAGGAGACCATGCTTCCAGCCTTGCCACTTCCCACTTG
GGAGGAAGTGAGGGAGGGAGGGAAGCAAGGAGGGCTGCTGCTACTGCAGG
AGGGCCTGTCCTTCGCCCGGAACTGGTGGGCTCAGCCTCACGTGCAAGCA
CCAGTATTACTCTTGGATTTGCAGACCCCTCCCGGGGGGGGACGGGGAAG
GAAGGAGGGAGGGAAGGAGGGAGGTTGTTTGTGCGATGGTTGGAGGAATT
GGGGGGCTATGCGTGTTTCGATGGGTTATGGGCGTGGGGCTTGGCGTTGT
TGGGGTACCGCTTTCATGCCCTCTCTCCCTACCTTCTTGCCCTCGAGGTG
TTGCCTCCTTTGGATGACGGGGGAGGAGAGGAAGGGGGAGGAGGGGGGAG
GAGGAGTGTGGGTGTGCGTCATCGTTAAGCCCGAGGGATGTAAAGGCGAC
GTTATGGAGATTTGA
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protein sequence of NO17G00380.1

>NO17G00380.1-protein ID=NO17G00380.1-protein|Name=NO17G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MHFQEWKKGYPDWATPHHGLTYRGTFITREGFVPLPYSSSSPSFPSVSLS
PSSLLSPGETMMDLGPSFYCTRFLASAASPFPHCVERVYPSSLPPSPLPP
SDAAAAAAAAAGVTAAQRARRRRAEEERWTEKEEGEQITLLLLLPCFPPH
PPHDTMQPITREEEEGGGEKGKEDLLTQRLLAILSLWPTSAPVIIVTPYS
PPPSLLPSLLLHHPFLVLLPFFEEGEEGREGGRKKQHPVPYKALANRGLD
AVQTRYVLGPVDPSKVGWAGGREGGKEEGREPGIYARLKSALEEVESGRE
GGGGGGREEGRGGGGNALVVPVVAAVEGGREGGRKRLFEQGLFSFYSSLG
NEEEKETMLPALPLPTWEEVREGGKQGGLLLLQEGLSFARNWWAQPHVQA
PVLLLDLQTPPGGGRGRKEGGKEGGCLCDGWRNWGAMRVSMGYGRGAWRC
WGTAFMPSLPTFLPSRCCLLWMTGEERKGEEGGGGVWVCVIVKPEGCKGD
VMEI*
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Synonyms
Publications