NO17G00340, NO17G00340 (gene) Nannochloropsis oceanica

Overview
NameNO17G00340
Unique NameNO17G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2500
Alignment locationchr17:125314..128096 +

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide repeat containing protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:125314..128096 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Homology
BLAST of NO17G00340 vs. NCBI_GenBank
Match: EWM21192.1 (tetratricopeptide repeat containing protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 386.3 bits (991), Expect = 1.600e-103
Identity = 237/561 (42.25%), Postives = 288/561 (51.34%), Query Frame = 0
Query:    1 MDPAMVEAMQAIKFDGKDFKQLAIQAKSKEKEEEGXXXXXXMEGREVRLGMRDGTSTSRHPPLRIAFPSSLSTPSDSPLYCDFSYPSLSLPSLLSLPLSDHGNDLFKWGKKNPAQYSNCIPSYNEAETYALSIPLMGSQKTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLSKEDKALLVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGR-----ALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEG-EGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRIRDLLP 556
            MDPAMV+A+QAIK  GK+ KQLA+QAKS                                                                        HGN+LF WGKKNPAQYSNC+PSY+EAE YAL++PL+                                            CLSK ++A+L+SQIYANRAMAH+MLKNYRSC+QDC RAL  LPSNVKAHYR ARA  ALG Y EAI AC A                                                   +VR LK++L  +  R  A+  R+ GRRK L+ AW + + R +++G P W E  +GGGEARR+ EALP W E G       +W LLLLYPEY TSDFV AV+E  M+A  LAEVLPE+EEG EGGAA WD R DY CS++E+YFQA+R G  + EVL +EE Y+ +VE  YG  GVGG DY  +E              W     YWV+VHV C L++VL+HPD ++PATCPTLHVF R S AH AFL +    +R LLP
Sbjct:   73 MDPAMVDAIQAIKLGGKNAKQLALQAKS------------------------------------------------------------------------HGNELFGWGKKNPAQYSNCLPSYDEAEKYALAVPLLPEPSQAS------------------GGEETPAQDARHGQEEEEDCLSKAEQAVLLSQIYANRAMAHLMLKNYRSCQQDCTRALARLPSNVKAHYRLARACFALGQYPEAIKACMA---------------------------------------------------AVRRLKLRLNDQKKRALAQAERRAGRRKALRAAWTMCQARGVRIGRPPWCEEAQGGGEARRRAEALP-WEEAGAGGPQVGVWSLLLLYPEYATSDFVAAVEETGMVAQVLAEVLPEEEEGREGGAAGWDMRGDYTCSRLEVYFQAVRTGAGKGEVLPSEEAYVEAVEDMYGRIGVGGGDY-AKEGXXXXXXXXXXXEKWGPPEAYWVHVHVGCRLLNVLQHPDYLLPATCPTLHVFARNSPAHSAFLGEHGATMRSLLP 490          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: XP_005854810.1 (tpr repeat protein [Nannochloropsis gaditana CCMP526] >EKU21546.1 tpr repeat protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 241.1 bits (614), Expect = 8.200e-60
Identity = 167/403 (41.44%), Postives = 201/403 (49.88%), Query Frame = 0
Query:    1 MDPAMVEAMQAIKFDGKDFKQLAIQAKSKEKEEEGXXXXXXMEGREVRLGMRDGTSTSRHPPLRIAFPSSLSTPSDSPLYCDFSYPSLSLPSLLSLPLSDHGNDLFKWGKKNPAQYSNCIPSYNEAETYALSIPLMGSQKTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLSKEDKALLVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPS-----------SSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGR-----ALWPLLLLYPE 388
            MDPAMV+A+QAIK  GK+ KQLA+QAKS                                                                        HGN+LF WGKKNPAQYSNC+PSY+EAE YAL++PL+                                            CLSK ++A+L+SQIYANRAMAH+MLKNYRSC+QDC RAL  LPSNVKAHYR ARA  ALG Y EAI AC AGL  CP S                              XXXXXXXX  ED +RALLLALR ++VR LK++L  +  R  A+  R+ GRRK L+ AW + + R +++G P W E  +GGGEARR+ EALP W E G       +W LLLLYP+
Sbjct:   53 MDPAMVDAIQAIKLGGKNAKQLALQAKS------------------------------------------------------------------------HGNELFGWGKKNPAQYSNCLPSYDEAEKYALAVPLLPEPSQAS------------------GGEETPAHNARHGQEEEEDCLSKAEQAVLLSQIYANRAMAHLMLKNYRSCQQDCTRALARLPSNVKAHYRLARACFALGQYPEAIKACMAGLDQCPASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPEDPNRALLLALRGQAVRRLKLRLNDQKKRALAQAERRAGRRKALRAAWTMCQARGVRIGRPPWCEEAQGGGEARRRAEALP-WEEAGAGGPQVGVWSLLLLYPD 364          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: OQS05226.1 (hypothetical protein THRCLA_20685 [Thraustotheca clavata])

HSP 1 Score: 124.0 bits (310), Expect = 1.500e-24
Identity = 126/462 (27.27%), Postives = 190/462 (41.13%), Query Frame = 0
Query:   94 LSLPLSDHGNDLFKWGKKNPAQYSNCIPSYNEAETYALSIPLMGSQKTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLSKEDKALLVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQ-LQKETDRIAAREGRKVGRRKGLKEAW-AISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRIRDL 554
            L+L   + GN +F  GKKN   Y   I  Y +A TY L      +   V                                           DK  L++ I +NRA AH+ LKNY SC+ D  RAL + P N+KA YR A+A   L    + +  C+ GL   P +                                    LLALR+   R+L+ Q +Q+E D   A+      ++  + E +  +   R I++G    ++      E +  ++      E G   WP+L LY EY  SDF++   E++M    LA + PED    G    WDKR+DY  S++++Y  A       V     +EE+         L GV   D M     E +  + ++K+ +K +  +W  V   C L  +L H + VVP   P ++V VRGS+   +FL   E R+ +L
Sbjct:   58 LALKYKNKGNKMFSDGKKNKNYYGYAIKEYTDAFTYGLKALAEPTDPDVLAKMDLDEPIVM-------------------------------DK--LMATILSNRAAAHLSLKNYGSCRSDAARALKYDPKNIKAIYRGAKASSLLKKPEDTLRYCSVGLTIDPTNKE----------------------------------LLALRKDGDRILEEQRVQRELDEFKAK------KKYAMTEKYRKLCTMRNIRVGRAVIDDARVKDFEGKADLD------EEGVMGWPVLFLYDEYGQSDFIQCFSEQDMFIEHLANMFPED----GPFCFWDKRQDYVASKLQIYVAA-----DVVPAFKLQEEW------HVALSGVKELDSM-----ETKRLDTDEKHEYKTK--FWFLVSPFCKLFRLLTHREYVVPG-IPVVNVMVRGSKQEASFLEAIEHRVINL 417          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: GAX15980.1 (hypothetical protein FisN_22Hh165 [Fistulifera solaris])

HSP 1 Score: 123.6 bits (309), Expect = 1.900e-24
Identity = 127/477 (26.62%), Postives = 189/477 (39.62%), Query Frame = 0
Query:   91 PSLLSLPLSDHGNDLFKWGK----KNPAQYSNCIPSYNEAETYALSI-PLMGSQKTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLSKEDKALLVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEA-LPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAA-PWDKRRDYRCSQVEMYFQAMREG------GKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDR-GEYW--------VNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRD 546
            P+ L L     GND F+ GK    KN + +   +  Y EA  +AL I PL      V                                        ++++     S+I  N A+ HM LKN+   + +  +AL +   NVKA YR A+AY  L  +  A +A   GL   P            +NP +           X                      V     T++IA            L +   +S   E +  E  W++     G   +Q++A +  W      +WP L LYP +  SDF+    E EMLA+ LAEV PE E+ E   A PWD   ++ CSQ+ +YF+  +         + V++L T+ + +R  E    L G  GDD         R++  EQ+  WK + G  W        V VH A +L D+L+    VVP    TL++F     AH AF+++
Sbjct:  102 PTRLMLSFRRKGNDAFQNGKRNQVKNMSYFRTALNHYYEAFAWALKIEPLQEGDYAV--------------------------------ADTDDPTYNEQELNQERSKICGNIALTHMQLKNWGFVRDESKKALQYDDQNVKAWYRLAKAYQQLQEWEAAGDALEQGLAVEP------------ENPDLLKLQQLLAERIXXXXXXXXXXXXXXXXXXXXXXXVWKHASTNKIA------------LGKVPLVSSVEEDEEEESRWHQHMPHSGHLPKQLQAGVDEW------VWPCLFLYPSHQHSDFIAQFGEGEMLAMRLAEVFPELEDDETETAMPWDHNNEFTCSQLAIYFEVHQTARDDVIHPEHVQLLKTQGDTMRFYEASRALKGDEGDDIAAVVTAVARKQLHEQRQAWKKKHGSLWAVPPPNPVVRVHPALTLGDILRDERMVVPNFLVTLYIFPEQHPAHDAFIKE 516          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: EJK69001.1 (hypothetical protein THAOC_09788 [Thalassiosira oceanica])

HSP 1 Score: 122.5 bits (306), Expect = 4.200e-24
Identity = 107/389 (27.51%), Postives = 172/389 (44.22%), Query Frame = 0
Query:  190 LVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLG----------EPYWNEGGRGGGEAR-----RQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEE--GEGGAAPWDKRRDYRCSQVEMYFQ--AMREGGK-----EVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVW-KDRGEYW--------VNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRD 546
            L S I +N AMAH+ LKN+   + +  +A+ +   N+KA YR A+A+  L ++ EA NA  +GL                                   E +++ +L   ++   R+ K ++ ++      RE  +  R   +K+ W  +++  I LG          +   NE G    EAR          LP+  + G   WP+L +YP +  SDF+E   EEE++AL +A++ PE E+   +    PWD   ++RCS + +YF+   + EG K      VE L  +   +R  E    L G  G +        +R+    Q+ +W +  G  W        + VH A +L  VL+H D VVP    T+ +F     AH  FL+D
Sbjct:  182 LKSIICSNCAMAHLCLKNWGFVRDESKKAVDYNSKNIKAWYRLAKAHEMLQNWDEAGNAIESGL---------------------------------EVEKDNKEILQLQKKLDKRIRKARVLRQ-----QRERARAERTSRIKDVWRHTKQDNIALGRVSLVATVKDDEDENESGGDEVEARWHHHYPHTGQLPKRAQDGSWTWPVLFVYPSHHQSDFIEHFAEEEIVALRMAQMFPEQEDDCSQETEMPWDYNNEFRCSNLAVYFEVHCLTEGEKVIHPDSVERLKDQAATMRFYEASRALKGDEGPEMATVARCVERKHLHRQRKMWIQAHGSLWAKPEPCPVIQVHPAATLGQVLRHKDMVVPNFLVTMFLFPADHPAHTEFLKD 532          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: GAX97028.1 (Hypothetical protein PINS_004863 [Pythium insidiosum])

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-23
Identity = 112/363 (30.85%), Postives = 159/363 (43.80%), Query Frame = 0
Query:  190 LVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAA--REGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRI 551
            L SQI +NRA  H+ +KNY SC+ D  RA+ + P NVKA+YR A+A   L   A+ +     GL                                    D    LLL L+ +   +L      E +RIAA  +E  +  RR   ++   +   R++K+G     +      E +  +EA     E G+ +WP+L LY E+ T+DFV+A  E +     LA + PED    G    WD+   Y  S + +Y  A       VE   + EE+         L G    D    E R  R EEL        + + W+ V   CSL  +L   D VVP   P ++VFVR SQAH+ FLR  +GR+
Sbjct:  113 LTSQILSNRAAVHLDMKNYGSCRSDAARAIRYDPKNVKAYYRGAKASRLLRKPADTLRYAELGLQF----------------------------------DPENKLLLKLQAEGHAML------EEERIAAEKKEFERKKRRAFTEKYRQLCTLRQVKVGRAVIEDERVKQYEGKADLEA-----ETGQMVWPMLFLYDEHSTTDFVQAFAEHDTFIEHLANMFPED----GPFCEWDEDEKYVASGLVIYAAA-----DVVEPFRSPEEW------HVALSGDAESD--DAEVRRLRREELHDA-----KTQRWLEVSPFCSLHRLLSREDYVVPG-IPVVNVFVRDSQAHRDFLRRIDGRV 407          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: OQR84459.1 (hypothetical protein ACHHYP_13362 [Achlya hypogyna])

HSP 1 Score: 115.9 bits (289), Expect = 4.000e-22
Identity = 111/365 (30.41%), Postives = 160/365 (43.84%), Query Frame = 0
Query:  190 LVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQ-LQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRIRDL 554
            L++ I  NRA AH+ LKNY SC+ D  RAL + P N+KA YR A+A   L    + +  C  GL                                  A D +   LLALR    R+L+ Q +Q+E D   A++   +  +   ++  A+   R +++G    ++      E +  ++      E G   WP+LLLY EY  SDF+++  E +M    LA + PE    EG    WD+R DY  SQ+ +Y  A       V    T E +         L G    D M E AR   +E+ E K       + W+ V   C L  +L H   VVP   P L+V VRGS+   +FL   E R+ +L
Sbjct:  122 LMATILTNRAAAHLALKNYGSCRSDAARALKYDPKNLKAIYRGAKASSLLKKPEDTLRYCAVGL----------------------------------AIDPNNKELLALRVDGDRILEEQRVQRELDAFKAKKAHAMTDK--FRKLCAL---RGVRVGRGVLDDARVKDFEGKADLD------EEGVMCWPVLLLYDEYGQSDFIQSFGERDMFIEHLANMFPE----EGPFCFWDQRHDYVASQLVVYAAA-----DVVPAFSTPEAW------HVALSGAKESDAM-ESARLDADEKHEYK------PKVWLRVSPFCKLFQLLTHHQYVVPG-IPVLNVMVRGSKQEASFLEAIEHRVVNL 418          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: XP_024576229.1 (Hsp90 co-chaperone CNS1 (contains TPR repeats) [Plasmopara halstedii] >CEG39860.1 Hsp90 co-chaperone CNS1 (contains TPR repeats) [Plasmopara halstedii])

HSP 1 Score: 115.5 bits (288), Expect = 5.200e-22
Identity = 112/379 (29.55%), Postives = 167/379 (44.06%), Query Frame = 0
Query:  182 LSKEDKAL------LVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRW-TEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRIRDL 554
            L KE++ L      L SQI  NRA   + LKNY SC+ D  +A+   PSNVKA+YR A+A   L   A+ +  C  GL                                    D    LLLAL+ + ++L+KV ++ E  +    E  ++ RR    +   +   R I++G    ++      E  RQ E       + G   WP+L LY ++ TSDFV+   E+E +   LA + PED    G  A WD ++++  S++ +Y  A                Y  S E   GL G   +D   EE +  R EE  +      + +YW+ V   C+L  +L +   VVP   P L+VFVR S+A   FL+  E ++  L
Sbjct:  103 LPKEERDLSYNMKELTSQILCNRAAVQLELKNYASCRSDAAKAINFDPSNVKAYYRGAKASRLLRKPADTLLYCKEGL----------------------------------KLDPQNKLLLALQVEGLQLVKV-IRMEKMKF---EKERMNRRAATDKYRKLCAARGIRVGRALVDD------ERVRQYEGKADLDPKCGSMYWPVLFLYDQHGTSDFVQCFGEQEAVIEHLANMFPED----GPYAQWDTKKEFVASKLVVYAAA-----------DMVLPYSTSKEWHVGLSGEKEED--DEEVKRIRLEEKHEA-----KTQYWIEVSPFCTLQQLLTNEKYVVPG-IPVLNVFVRDSEALSNFLKRIEQKVTKL 414          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: XP_002895422.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56726.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 113.6 bits (283), Expect = 2.000e-21
Identity = 107/365 (29.32%), Postives = 159/365 (43.56%), Query Frame = 0
Query:  186 DKALLVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRI 551
            D   L SQI  NRA   + LKNY SC+ D  +A+   PSNVKA+YR A+A   L    + +  C  GL   P ++    L+                        E R L+  LR   V  LK + ++   R A  + RK+   +G++   A+  +  ++  E          G+A           + G   WP+L LY ++ TSDFV+   E++ +   LA + PED    G  A WD   ++  S++ +Y  A                Y  S E   GL G   +D   E +R + EE+ E K       +YW+ V   C+L  +L H   VVP   P L++FVRGS+A   FL   E ++
Sbjct:  114 DMKELTSQILCNRAAVQLELKNYASCRSDAAKAINRDPSNVKAYYRGAKASRMLRKPVDTLRYCEEGLKRDPKNNLLLKLQV-----------------------EGRRLVEELR---VEKLKRERERMKRRAATDKYRKLCASRGVRVGRAMVDDERVRQYE----------GKADLD-------PQSGNMYWPVLFLYDQHGTSDFVQFFGEQDTVIEHLANMFPED----GPYADWDTNNEFVASKLVVYAAA-----------DMVVPYSSSKEWHVGLSGEKEED-DEEVSRIRLEEKHEAKT------QYWIEVAPFCTLQQLLTHEKYVVPGV-PVLNIFVRGSEALGNFLTRIERKV 412          
BLAST of NO17G00340 vs. NCBI_GenBank
Match: ETL89083.1 (hypothetical protein L917_11924 [Phytophthora parasitica] >ETO71059.1 hypothetical protein F444_12541 [Phytophthora parasitica P1976] >KUF75376.1 Tetratricopeptide repeat protein 4 [Phytophthora nicotianae] >KUF90460.1 ubiquitin conjugation factor E4 [Phytophthora nicotianae])

HSP 1 Score: 112.5 bits (280), Expect = 4.400e-21
Identity = 108/375 (28.80%), Postives = 162/375 (43.20%), Query Frame = 0
Query:  182 LSKEDKAL------LVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSSXXXXXXXXSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRI 551
            L KE++ L      L SQI  NRA   + LKNY SC+ D  +A+   PSNVKA+YR A+A   L   A+ +  C  GL   P +     L+                        E R L+  LR   V  LK + ++   R A  + RK+   +G++   A+  +  ++  E          G+A           E G   WP+L LY ++ TSDFV+   E++ +   LA + PED    G  A WD   ++  S++ +Y             +     Y    E   GL G   +D   EE +  R EE  +      + ++W+ V   C+L  +L H   VVP   P L++FVRGS+A   FL   E ++
Sbjct:  104 LPKEERDLSYDMKELTSQILCNRAAVQLELKNYASCRSDAAKAINFDPSNVKAYYRGAKASRMLRKPADTLRYCEEGLQRDPENKLLLKLQV-----------------------EGRRLVEELR---VEKLKRERERMKRRAATDKYRKLCASRGVRVGRALVDDERVRQYE----------GKADLD-------PESGNMYWPVLFLYDQHGTSDFVQFFGEQDTMIEHLANMFPED----GPYADWDTNNEFVASKLVVY-----------AAVDMVLPYSSPKEWHVGLSGEKEED--DEEVKRIRLEEKHEA-----KTQFWIEVAPFCTLQQLLTHDKYVVPG-IPVLNIFVRGSEALGNFLTRIERKV 412          
The following BLAST results are available for this feature:
BLAST of NO17G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21192.11.600e-10342.25tetratricopeptide repeat containing protein 4 [Nan... [more]
XP_005854810.18.200e-6041.44tpr repeat protein [Nannochloropsis gaditana CCMP5... [more]
OQS05226.11.500e-2427.27hypothetical protein THRCLA_20685 [Thraustotheca c... [more]
GAX15980.11.900e-2426.62hypothetical protein FisN_22Hh165 [Fistulifera sol... [more]
EJK69001.14.200e-2427.51hypothetical protein THAOC_09788 [Thalassiosira oc... [more]
GAX97028.12.700e-2330.85Hypothetical protein PINS_004863 [Pythium insidios... [more]
OQR84459.14.000e-2230.41hypothetical protein ACHHYP_13362 [Achlya hypogyna... [more]
XP_024576229.15.200e-2229.55Hsp90 co-chaperone CNS1 (contains TPR repeats) [Pl... [more]
XP_002895422.12.000e-2129.32conserved hypothetical protein [Phytophthora infes... [more]
ETL89083.14.400e-2128.80hypothetical protein L917_11924 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00340.1NO17G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00340.2NO17G00340.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00340.3NO17G00340.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641462gene_7856Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100474g2gene9231Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00340.1NO17G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00340.2NO17G00340.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00340.3NO17G00340.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00340 ID=NO17G00340|Name=NO17G00340|organism=Nannochloropsis oceanica|type=gene|length=2500bp
ACACCCCTTTCCCTGTCATCTCATTTTCGCCTTTCTCCCCTTCCTCCCTG
CTCCGATCTGTCATTTATTTCCAATCCAGGAAATGGATCCCGCCATGGTG
GAAGCAATGCAGGCTATCAAATTCGACGGCAAGGACTTCAAGCAGCTAGC
CATTCAAGCCAAGAGTAAGGAGAAAGAGGAGGAAGGAAGGAAGGAAGAAG
GGAGAATGGAAGGGAGGGAAGTAAGGCTGGGAATGCGCGACGGTACCAGC
ACCTCTCGCCATCCCCCTCTCCGTATTGCTTTTCCTTCTTCTCTTTCCAC
TCCATCCGATTCTCCACTGTACTGCGACTTCTCCTACCCATCTCTTTCAC
TCCCTTCACTTCTCTCCCTCCCTCTTTCAGACCACGGGAATGACCTTTTC
AAATGGGGCAAGAAAAACCCGGCACAGTACAGCAACTGCATCCCCTCCTA
CAACGAAGCCGAGACATACGCACTCTCCATCCCTCTCATGGGTTCCCAAA
AAACGGTTCAGGAAACGAAGAAGAAAGGAGGGCAGGAGAGCGAAAACGGA
AAAGGAGGAAAGGAGGAGGAGGGGGAGGAACGGGCGGTAGTAGAGGAGGA
GGAGGAGGAGGATGAGAGCAAGTGCCTGTCGAAGGAGGACAAGGCATTGC
TCGTTTCTCAAATATACGCCAACCGAGCCATGGCTCACATGATGCTCAAg
tacgtacatgggagagagaatttacgtcccttcctccctccctccctccc
tccctcccaactcctccttgtcactcaagccccctccttctccttcgtct
cctcctcctttcccatctattcattctctctagGAATTACCGTTCCTGTA
AGCAGGACTGCGACCGCGCTCTCTTCCACCTCCCATCCAACGTCAAGGCT
CATTACCGCAAGGCTCGTGCTTACCACGCCCTCGGCCACTACGCCGAAGC
CATCAACGCCTGCACTGCCGGGCTCGTTCATTGTCCGCCCTCCTCTTCAT
CGCGGCCTTTGAAGTGCGGTGATAAGAACCCTCCCATTTTTACCTCTTCC
TCCAGCCCTCCTTCCCTCCCTCCTTCGGCCGAGGACGAGAGTCGAGCCCT
CCTCCTCGCGCTCCGTGAAAAGAGCGTGAGGCTCCTTAAGGTGCAACTCC
AGAAGGAAACCGACCGTATCGCAGCGAGAGAGGGGCGGAAGGTGGGAAGG
AGGAAAGGATTGAAGGAGGCATGGGCCATAAGCCGAGAGAGAGAAATCAA
GCTCGGAGAGCCCTACTGGAACGAAGGAGGGCGGGGAGGGGGGGAGGCAA
GGAGGCAAGTCGAAGCTCTACCACGATGGACTGAGGGAGGAAGGGCGCTG
TGGCCGCTGCTGTTACTCTACCCGGAGTATTTGACAAGCGATTTCGTCGA
GGCGGTGGACGAGGAGGAAATGCTGGCACTGACATTGGCTGAGGTCTTGC
CAGAGGACGAGGAGGGGGAGGGAGGGGCGGCGCCATGGGATAAGAGGAGG
GATTACAGGTGTTCACAGGTGGAGATGTATTTTCAGGCGATGAGGGAGGG
AGGGAAGGAAGTGGAGGTGTTGGGGACTGAGGAGGAGTATCTCAGGTCGG
TGGAGCGGTTTTATGGTTTGTGTGGGGTAGGTGGGGATGACTATATGGGG
GAGGAGGCGAGGGAGAAAAGGGAGGAGGAGCTGGAACAGAAGAATGTGTG
GAAGGACCGGGGAGAGTATTGGGTGAATGTTCATGTGGCGTGTTCACTGA
TGGACGTGCTGAAGCATCCGGATTGTGTGGTGCCGGCAACATGTCCGACG
TTGCATGTGTTTGTCAGGGGGTCTCAGGCGCATCAAGCTTTTTTGAGAGA
TACTGAGGGAAGGATCCGCGACTTGCTACCCAAGGAATTAATTGCCATGT
GAGGATTTGAAGCGTCGAGATCTGACACGTGGAAAGGAATGTGAATAACG
GAAGCGTATATATACATGTGTGTGTACATTCTGGGGAGGAAGATGTTGGT
GGTCTCTTGGGCTTTTGTCGTCGGATCTTTCTTTACTGATGTATTTTGAA
CTACTTATACCGCACCTTTGCGTGATTGCCATTCTCATGCGTAATAAAAA
AATATCGAGACGAATCTTAAATAATACGATAGAAACGTGGTCGGGTGCAG
GACAGTTGCTTTTGGCATCCGCCTAGGTTACGCACGCTTTTAGACGTTCA
TAAGTTTGGTCAACTTGAGGTTTGTAAGCATGAAAGAGCTCAAAGGAGAT
ACCGTACGATTTCAGAATAAGCCTCGATGTGATATGTAAATGTTGGTATG
CGCAGACTGGCCTTCCTAACACTCACGTGATGATCTGTGCATCTTCGCCA
AGACCGGGACGTTCGCCACAAAGGTGCTCAGCCTGCTGTATGGTAGGTAA
GACTTCAGAGCACTTTAACAGATATTACATGGAAGTGAGGAAATAAATGC
CAAGATGAAAGTTAGATCTGGAACATTGTGAAAGCAAAGGCGAAACTAGT
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protein sequence of NO17G00340.1

>NO17G00340.1-protein ID=NO17G00340.1-protein|Name=NO17G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MTSLPASSTMPSSSSVPECDDSPFLVGSKITPGYGGINQALTEGKGWSDE
DVLAYAKTIGDNHPMFAETVEEMDPAMVEAMQAIKFDGKDFKQLAIQAKN
HGNDLFKWGKKNPAQYSNCIPSYNEAETYALSIPLMGSQKTVQETKKKGG
QESENGKGGKEEEGEERAVVEEEEEEDESKCLSKEDKALLVSQIYANRAM
AHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACT
AGLVHCPPSSSSRPLKCGDKNPPIFTSSSSPPSLPPSAEDESRALLLALR
EKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPY
WNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEE
EMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVE
VLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGE
YWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRI
RDLLPKELIAM*
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protein sequence of NO17G00340.2

>NO17G00340.2-protein ID=NO17G00340.2-protein|Name=NO17G00340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp
MTSLPASSTMPSSSSVPECDDSPFLVGSKITPGYGGINQALTEGKGWSDE
DVLAYAKTIGDNHPMFAETVEEMDPAMVEAMQAIKFDGKDFKQLAIQAKS
KEKEEEGRKEEGRMEGREVRLGMRDGTSTSRHPPLRIAFPSSLSTPSDSP
LYCDFSYPSLSLPSLLSLPLSDHGNDLFKWGKKNPAQYSNCIPSYNEAET
YALSIPLMGSQKTVQETKKKGGQESENGKGGKEEEGEERAVVEEEEEEDE
SKCLSKEDKALLVSQIYANRAMAHMMLKNYRSCKQDCDRALFHLPSNVKA
HYRKARAYHALGHYAEAINACTAGLVHCPPSSSSRPLKCGDKNPPIFTSS
SSPPSLPPSAEDESRALLLALREKSVRLLKVQLQKETDRIAAREGRKVGR
RKGLKEAWAISREREIKLGEPYWNEGGRGGGEARRQVEALPRWTEGGRAL
WPLLLLYPEYLTSDFVEAVDEEEMLALTLAEVLPEDEEGEGGAAPWDKRR
DYRCSQVEMYFQAMREGGKEVEVLGTEEEYLRSVERFYGLCGVGGDDYMG
EEAREKREEELEQKNVWKDRGEYWVNVHVACSLMDVLKHPDCVVPATCPT
LHVFVRGSQAHQAFLRDTEGRIRDLLPKELIAM*
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protein sequence of NO17G00340.3

>NO17G00340.3-protein ID=NO17G00340.3-protein|Name=NO17G00340.3|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MDPAMVEAMQAIKFDGKDFKQLAIQAKSKEKEEEGRKEEGRMEGREVRLG
MRDGTSTSRHPPLRIAFPSSLSTPSDSPLYCDFSYPSLSLPSLLSLPLSD
HGNDLFKWGKKNPAQYSNCIPSYNEAETYALSIPLMGSQKTVQETKKKGG
QESENGKGGKEEEGEERAVVEEEEEEDESKCLSKEDKALLVSQIYANRAM
AHMMLKNYRSCKQDCDRALFHLPSNVKAHYRKARAYHALGHYAEAINACT
AGLVHCPPSSSSRPLKCGDKNPPIFTSSSSPPSLPPSAEDESRALLLALR
EKSVRLLKVQLQKETDRIAAREGRKVGRRKGLKEAWAISREREIKLGEPY
WNEGGRGGGEARRQVEALPRWTEGGRALWPLLLLYPEYLTSDFVEAVDEE
EMLALTLAEVLPEDEEGEGGAAPWDKRRDYRCSQVEMYFQAMREGGKEVE
VLGTEEEYLRSVERFYGLCGVGGDDYMGEEAREKREEELEQKNVWKDRGE
YWVNVHVACSLMDVLKHPDCVVPATCPTLHVFVRGSQAHQAFLRDTEGRI
RDLLPKELIAM*
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Synonyms
Publications