NO17G00320, NO17G00320 (gene) Nannochloropsis oceanica

Overview
NameNO17G00320
Unique NameNO17G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr17:120190..121665 +

Link to JBrowse

Properties
Property NameValue
DescriptionEndothelial differentiation-related factor 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:120190..121665 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010982Lambda_DNA-bd_dom
IPR013729MBF1_N
IPR001387Cro/C1-type_HTH
Homology
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: OQR91771.1 (hypothetical protein ACHHYP_04375 [Achlya hypogyna])

HSP 1 Score: 119.4 bits (298), Expect = 9.600e-24
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 0 
Query:   46 GSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            G+ ++  K + G N+SAH N G N+RKL+E+TE+F    VDRS S AL +AR+ KG++QK LAT + EKP VI +YESGRAIPNP II+K++RALG  LPRG KK
Sbjct:   39 GNVTTEVKHTNGLNRSAHGNAGTNMRKLDEDTENFKHDTVDRSLSQALQKARLDKGMTQKALATAINEKPQVIGEYESGRAIPNPAIISKIERALGCRLPRGPKK 143
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: CBN77687.1 (flagellar associated protein, transcriptional coactivator-like protein [Ectocarpus siliculosus])

HSP 1 Score: 116.3 bits (290), Expect = 8.200e-23
Identity = 66/145 (45.52%), Postives = 92/145 (63.45%), Query Frame = 0 
Query:    6 WTTVAAKPKKKPTAGGPKPAGVAQPWQSRPAPSASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W TV     +     G K A  A   +S            G+  + +KF+AGENKS+H     N++KL++ETE+F   RVDR  + A+ QAR+GK ++QK+LAT++ EKP V+ +YESG+AIPNP +I+KL+RALGV LPR  KK
Sbjct:    5 WNTVMISKTRPTATRGQKNAATAAAARS------------GTLDTERKFAAGENKSSHRG-HMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQLISKLERALGVRLPRPGKK 136
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: OWZ16742.1 (hypothetical protein PHMEG_0009419 [Phytophthora megakarya])

HSP 1 Score: 115.9 bits (289), Expect = 1.100e-22
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 0 
Query:   31 WQSRPAP-------SASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W SR  P       + ++    G+ ++  K++AG NK AH+    N+RKLEE+T++F    VDRS S AL +ARM K ++QK+L T + EKP VI DYESGRAIPN  II+KL+RALGV LPRG KK
Sbjct:   15 WGSRAPPRGAAKQQALNSARRAGNVTTEAKYNAGTNKGAHSAANVNMRKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGPKK 141
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: XP_009530509.1 (hypothetical protein PHYSODRAFT_354933 [Phytophthora sojae] >EGZ13080.1 hypothetical protein PHYSODRAFT_354933 [Phytophthora sojae])

HSP 1 Score: 115.2 bits (287), Expect = 1.800e-22
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 0 
Query:   31 WQSRPAP-------SASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W SR  P       + ++    G+  +  K++AG NK AH+    N+RKLEE+T++F    VDRS S AL +ARM K ++QK+L T + EKP VI DYESGRAIPN  II+KL+RALGV LPRG KK
Sbjct:   18 WGSRAPPRGAAKQQALNSARRAGTVVTEAKYNAGTNKGAHSAANVNMRKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGSKK 144
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: XP_024578942.1 (multiprotein bridging factor 1 [Plasmopara halstedii] >CEG42573.1 multiprotein bridging factor 1 [Plasmopara halstedii])

HSP 1 Score: 114.8 bits (286), Expect = 2.400e-22
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 0 
Query:   31 WQSRPAP-------SASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W SR  P       + ++    G+  +  K +AG NK AH+    N+RKLEE+TE+F    VDRS S AL +ARM K L+QK+L T + EKP VI DYESGRAIPN  II+KL+RALGV LPRG KK
Sbjct:   18 WGSRAPPRGAAKQAALNSARRAGNVITEAKHNAGTNKGAHSAANVNMRKLEEDTENFKHDAVDRSLSQALMKARMEKKLNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGSKK 144
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: POM61097.1 (Transcriptional coactivator, multiprotein bridging factor Mbf1 (predicted) [Phytophthora palmivora var. palmivora] >POM65567.1 Transcriptional coactivator, multiprotein bridging factor Mbf1 (predicted) [Phytophthora palmivora var. palmivora])

HSP 1 Score: 114.8 bits (286), Expect = 2.400e-22
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 0 
Query:   31 WQSRPAP-------SASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W SR  P       + ++    G+  +  K++AG NK AH+    N+RKLEE+T++F    VDRS S AL +ARM K ++QK+L T + EKP VI DYESGRAIPN  II+KL+RALGV LPRG KK
Sbjct:   15 WGSRAPPRGAAKQQALNSARRAGNVVTEAKYNAGTNKGAHSAANVNMRKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGPKK 141
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: ETI54772.1 (hypothetical protein F443_02472 [Phytophthora parasitica P1569] >ETK94629.1 hypothetical protein L915_02354 [Phytophthora parasitica] >ETL48024.1 hypothetical protein L916_02315 [Phytophthora parasitica] >ETM01126.1 hypothetical protein L917_02244 [Phytophthora parasitica] >ETM54300.1 hypothetical protein L914_02344 [Phytophthora parasitica] >ETO83540.1 hypothetical protein F444_02455 [Phytophthora parasitica P1976] >ETP24610.1 hypothetical protein F441_02420 [Phytophthora parasitica CJ01A1] >ETP52567.1 hypothetical protein F442_02440 [Phytophthora parasitica P10297] >KUF83104.1 Multiprotein-bridging factor 1b [Phytophthora nicotianae] >KUF88387.1 Signal peptide peptidase 2B [Phytophthora nicotianae])

HSP 1 Score: 114.4 bits (285), Expect = 3.100e-22
Identity = 65/127 (51.18%), Postives = 83/127 (65.35%), Query Frame = 0 
Query:   31 WQSRPAP-------SASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W SR  P       + ++    G+  +  K+ AG NK AH+    N+RKLEE+T++F    VDRS S AL +ARM K ++QK+L T + EKP VI DYESGRAIPN  II+KL+RALGV LPRG KK
Sbjct:   18 WGSRAPPRGAAKQAALNSARRAGNVVTETKYGAGTNKGAHSAANVNMRKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGPKK 144
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: XP_008899699.1 (hypothetical protein PPTG_07285 [Phytophthora parasitica INRA-310] >ETN15084.1 hypothetical protein PPTG_07285 [Phytophthora parasitica INRA-310])

HSP 1 Score: 114.4 bits (285), Expect = 3.100e-22
Identity = 65/127 (51.18%), Postives = 83/127 (65.35%), Query Frame = 0 
Query:   31 WQSRPAP-------SASTYTGGGSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            W SR  P       + ++    G+  +  K+ AG NK AH+    N+RKLEE+T++F    VDRS S AL +ARM K ++QK+L T + EKP VI DYESGRAIPN  II+KL+RALGV LPRG KK
Sbjct:   18 WGSRAPPRGAAKQEALNSARRAGNVVTETKYGAGTNKGAHSAANVNMRKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGPKK 144
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: XP_008605690.1 (transcription factor [Saprolegnia diclina VS20] >EQC40846.1 transcription factor [Saprolegnia diclina VS20])

HSP 1 Score: 113.6 bits (283), Expect = 5.300e-22
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 0 
Query:   46 GSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            G+ S+  K + G N+SAH   G N+RKL+E+TE+F    VDRS S AL++AR+ KG++QK LAT + EKP VI +YESGRAIPNP II+K++RALG  LPRG KK
Sbjct:   39 GNVSTEVKHTNGLNRSAHGAAG-NMRKLDEDTENFKHDTVDRSLSQALSKARLDKGMTQKALATAINEKPQVIGEYESGRAIPNPAIISKIERALGCRLPRGPKK 142
[Close]
BLAST of NO17G00320 vs. NCBI_GenBank
Match: XP_012200982.1 (hypothetical protein SPRG_06202 [Saprolegnia parasitica CBS 223.65] >KDO28155.1 hypothetical protein SPRG_06202 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 113.6 bits (283), Expect = 5.300e-22
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 0 
Query:   46 GSASSAKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGKGLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK 151
            G+ S+  K + G N+SAH   G N+RKL+E+TE+F    VDRS S AL++AR+ KG++QK LAT + EKP VI +YESGRAIPNP II+K++RALG  LPRG KK
Sbjct:   39 GNVSTEVKHTNGLNRSAHGAAG-NMRKLDEDTENFKHDTVDRSLSQALSKARLDKGMTQKALATAINEKPQVIGEYESGRAIPNPAIISKIERALGCRLPRGPKK 142
The following BLAST results are available for this feature:
BLAST of NO17G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR91771.19.600e-2458.10hypothetical protein ACHHYP_04375 [Achlya hypogyna... [more]
CBN77687.18.200e-2345.52flagellar associated protein, transcriptional coac... [more]
OWZ16742.11.100e-2251.18hypothetical protein PHMEG_0009419 [Phytophthora m... [more]
XP_009530509.11.800e-2251.18hypothetical protein PHYSODRAFT_354933 [Phytophtho... [more]
XP_024578942.12.400e-2252.76multiprotein bridging factor 1 [Plasmopara halsted... [more]
POM61097.12.400e-2251.18Transcriptional coactivator, multiprotein bridging... [more]
ETI54772.13.100e-2251.18hypothetical protein F443_02472 [Phytophthora para... [more]
XP_008899699.13.100e-2251.18hypothetical protein PPTG_07285 [Phytophthora para... [more]
XP_008605690.15.300e-2258.10transcription factor [Saprolegnia diclina VS20] >E... [more]
XP_012200982.15.300e-2258.10hypothetical protein SPRG_06202 [Saprolegnia paras... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00320.1NO17G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600264gene_7858Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00320.1NO17G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00320 ID=NO17G00320|Name=NO17G00320|organism=Nannochloropsis oceanica|type=gene|length=1476bp
GGAATTCTTTTATGACTTCACATGCAACCGAAACAACAGACACACGAAGC
GTACCACACCCTTTGCACGAGCGTACTTGCAAGGGTATTAGGGTGCATCA
ACAATGTGAACATGATAATGCATCTGCGTTGCCTTGTTGCAGCGGGGCTC
TCTTGCTTGCTTGCCGTCTCTTCGACGGCTTAGCTTGAAGGACTTCCACA
ACCCACCATTTACACGGTTTCACACACCTCGCACCCGAACAGGAGTGCAC
GTTATCGTTTTATTTTGAAACATGGCGGACGCTGGGTGGACGACTGTGGC
GGCCAAACCCAAGAAGAAGCCGACTGCCGGAGGACCGAAACCTGCGGGTG
TAGCGCAGCCCTGGCAATCTCGCCCTGCGCCGTCTGCTTCTACGTACACG
GGTGGGGGATCAGCGTCGTCGGCCAAGAAATgtaagtgactgtatagaga
gggcgaaggaagattggacagcggccgtggaacataccgtgttggtttcg
tggagtcgcgaaagcttcctctcgcacctctgaccgtgggtctattttcc
ctatctctcctccctccttcaaccctccacagTCTCGGCGGGCGAGAACA
AGAGCGCACATACCAATACAGGCGCCAACCTGAGGAAGCTTGAAGAGGAG
ACGGAGGACTTCCATGgtacgttgataatcgaagagtgtcaagggaggga
gagatgagggaaaataggaggaagttgagtggttggaaggggaaggcggt
cgatgcgtggagagaaggccccccatggccagtgcatgtcttaataggtc
atttgtatccttatgcatgcaaggtgccgcatgtccgactctttatttca
atgcgcccgccttagtcccgctacgacttgccattcaattcccccacccc
tccctccctccctccctcccttccccccctttcctcagTCGCCCGCGTCG
ATCGCTCCTTCTCCGTGGCCCTGGCACAAGCACGCATGGGCAAGGGACTC
TCCCAAAAGGAGCTGGCCACTAGAGTGTGCGAAAAACCCAGTGTCATCAA
CGACTACGAAAGgtgcgacctctccctccatccctccctccctcaaatgt
cattggcctgtatcatgacttaccctcctccttccctccctccctccccc
ccctctcccttcagCGGCCGGGCCATTCCGAATCCCAACATCATCAACAA
GCTCGATCGGGCCCTCGGCGTGCATTTGCCTCGAGGCAAGAAGAAGTAGA
GGGAGGGCGGGAGGAGGAAGGAAGGAAGAGGGGAGGGAGGGATAGGCGGA
GGAGGGATGTGAGAGAAGAGAGATAATGAAGCACGAAGGGCGGCAGCCGC
TGCAACAATAAAGGGGAACAAGAAGAAGAAGAGGAGGGAAACAGGACACA
AAGAAAGAAGCTTAAGAAGAAGAAAAAGCAGAAGCAGCAGAAAGATGCCG
AAGATGAAGAAGCGACAGAGGGAGAG
back to top

protein sequence of NO17G00320.1

>NO17G00320.1-protein ID=NO17G00320.1-protein|Name=NO17G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MADAGWTTVAAKPKKKPTAGGPKPAGVAQPWQSRPAPSASTYTGGGSASS
AKKFSAGENKSAHTNTGANLRKLEEETEDFHVARVDRSFSVALAQARMGK
GLSQKELATRVCEKPSVINDYESGRAIPNPNIINKLDRALGVHLPRGKKK
*
back to top
Synonyms
Publications