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Properties
| Property Name | Value |
|---|
| Description | Unknown protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr17 | genome | chr17:70870..77195 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013929 | RNA_pol_II_AP1_C |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006366 | transcription by RNA polymerase II |
Homology
BLAST of NO17G00210 vs. NCBI_GenBank
Match: XP_023929981.1 (RNA polymerase II-associated protein 1 [Lingula anatina]) HSP 1 Score: 67.4 bits (163), Expect = 3.600e-7 Identity = 55/168 (32.74%), Postives = 82/168 (48.81%), Query Frame = 0
Query: 8 LDDQEREKLAWTRXXXXXXXXXXXXXXXXXXXXXXXXWIRVDLEGRLMDAGAEELVPTHSGLYHNPE--QRPGYTLTHLCDTARSTDRRQRALALRTWSRLLLNPSLLPALLAR-VKKGKRDGLLPGELALVLLTGLDDRHKAARLSAVPALAACLLDGKEERMKDEV 173
+D E EKLAW + R D +G L+ +EE VPTH GL+H+ E QRPGYTL L ARS + +QR +AL+T S+++ N A+ A +++ +L L ++ LDD + ++V ALAA L++ +E D V
Sbjct: 301 MDKVEPEKLAWMKDLPPAKLDDIKTGQT----------ARFDFQGLLI--SSEEEVPTHIGLHHHGEDPQRPGYTLEELFTLARSANIQQRVMALQTLSKIIQNAK--QAVFAETLQRPILPAVLEAGLVFLVRWALDDSVETTVAASVQALAALLVNTDDEAALDTV 454
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G00210 ID=NO17G00210|Name=NO17G00210|organism=Nannochloropsis oceanica|type=gene|length=6326bp
ATGCACGCGATTGACACCCTCCTCGACGACCAAGAGCGCGAGAAACTCGC
ATGGACCCGCAACAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTAGTGGCG
AGGGAGGGGAAGAGGGAGGGAGGGAGGGAGGCTGGATACGGGTGGACTTG
GAAGGACGACTGATGGATGCAGGGGCAGAGGAGTTGGTTCCCACTCATTC
AGGTCTCTACCATAACCCCGAGCAGgtcaggacgctccctccctcctccc
tcccttcctccctccctccttccctccttcgctccaaacactggattctc
aatctctctgctttttctccttccctccctccctcccccctttcctcagC
GACCTGGCTATACACTGACCCACTTGTGTGACACAGCGCGAAGTACCGAC
AGACGGCAGCGGGCCTTGGCCCTGCGgtaaaaaagaggagggagggaggg
agggagggagggagggagggcctccgcaaagaggctcaaacactaggtat
gtttcttcacagagcctgactcccttcctttctcactccctcctccctcc
ttcctccgtccctccgtcctatccgtagCACCTGGTCCCGGCTCCTCCTC
AACCCTTCCCTCCTTCCCGCCCTACTCGCCCGCGTCAAAAAAGGAAAACG
CGACGGGCTGCTACCCGGAGAACTGGCATTGGTGCTCCTGACAGgcaaga
cctccctccctccctccttccctctctccctccctccatttctcggattc
ttcactattccttccctctctcccttccttcctccttccctcccttcctc
cttccctccctctctccctccttcccttcctcccgccctccagGCCTCGA
CGACCGGCACAAGGCAGCCCGACTCTCCGCAGTGCCCGCCTTGGCCGCTT
GCCTCCTAGACGGGAAGGAGGAAAGGATGAAGGACGAGGTATTATTCGAC
CTCTCCTTTGGCCAGgtaggtaggtaggtaggtaggtaggtaggtaggga
gggagggaggcagggagggaaagtggagatgagtgctggatgttgagagc
atgttcaaatcctcctttccctccttttttccttccttcctccctccctc
cctcaccccctcattgtttcagGAACTCCCCCCTCCCTCCCTCGGCCCGT
ATGCCCGCTGGCCTGTCTCCTCCTCCCTCCCTTCCTCCTCCTCTCCCGAG
GACCCGGCCAATTCCGACGACGACCAAGAGGGGGAGGAGCAGCCGCCACG
AGACGCGTCCTCCCCCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCC
TCCCTTCCTCCCTGGTGGAACGGAAGCCGTCGAGTGTTTCTCGTGCCAGC
TCCTTGTTCCGAAAAGATGGGCCGGTCGCTCTCTTCCGTCTGGGAGGGGT
TCGGAAGCTGGGAGAGATGTTGAGGAGGAGGGTGGGAGGGGGGGAGGGGG
AGGAAGGGGGGGAGGACGAGGAGTGTGTGGAGGCAGTGTGTCAGCTGTTG
GGGTGGGCGGCGGCCCGTGGGAAGGAGTGCGGAGAGGCGGTTGCTTTTGC
CAAGgtaaagacctccctcccttcctccctccctccctccctccctccct
tcctccatccagctttcttcctcccacatgcccctccctccctccctccc
tccctccctccctccctccctcccttcctccatccggctttcttcctccc
acatgcccctccctccctcccttcctccatccggctttcttcctcccaca
tgccccttcctccctccctccctccctccctcccatcctccctccctccc
tctgcagGGCACCCTGGATGCTTTGGAGCGAGCCGTCATGGTTCGACATG
ATCCTCGCGCTCTTCGACTATTGCGGAGGCTGGCTCAGgtactccctccc
cccctccctccctccctccctctctccctcgcgtttttctctcctctatg
tactcccttcctcttccctcccttcctccctccctccctccctccctcct
tcgcagAGTTCCCGTCACGTCTGTCTCGAGCTCGCGGGTCGGGGCTTCCT
TCGGGCAAGCAAAGGGCTCCTAGGGCTGGAGGGAGGGCATGAGGGAGGGA
GGGGTGAAGAGGAGGGGAAGGACGAGGACGAGGAGGAGGATAGCCTAGCC
AGTGCGCCTGCGACGACTGGAACTTCGAGCCTGCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTGCCTGCAAGATTGAGGTGCTGAGGCTGTGGA
GGGTGGCCTTGGCCTTTGGGGCGGACGTGGAAGGGGTCCTTGACGTGCTG
GCCGTAGTTGGTGGGATGAGgtagggacgaagggaaggaaggaggggggg
ccagagggaaggagggagggagggaaggagggagggaagaggaagggagt
acatagcggagagaaaaacgcgagggagggagggagggagggggggaggg
agtacctgagccagcctccgcaatagtcgaagagcgcgaggatcatgtcg
aaccatgacggctcgctccaatgcatccagggtgccctgcagagggaggg
agggaggatgggagagagggtccgatgctttcgctggaccaagatgatct
cattcctctcttcctccctccctcccgcccgccctccctccctccctctg
cccctccctcctccttcagGTCGAGCTCCAGTGGCCTCTCGCTCACCCCC
GCCTCATGGGCGTCTCCGTCCTCTTCCTCCTCCCCCTCCTCCTCCTCCCT
CTTTCTCCCTCACTCCTGGCCTGCCTCACTCCTCACGTCTTTCTATCGGG
CCTTGGAAACCGCCTCCTACGCTCTTGCGGCCACTACAGCAGTAGGAGCA
GCAGGAGCAGCAGCGACAGTACGACAAACATCTCTCTCATCATCATCAGC
AGCAGCAGGAGGAGCAGGAACAGGAGCAGAGAGGATCCCGACGTCGAAGA
ACAAGGAGAACGAGAAGAGGGAGAGGGAGAGGGAGGAGAAGGACGAGAAA
Ggtaagcttcctctctccagcacacactctttgcgatcgaggctccttcc
ctcccccctcctttcctcctgcgacctcccctctattcgcccgcccctac
ccatatccttagactcatactcataaaccctccctctctccctccctccc
tccctccctccctccttcccgcgacctccctccctccttcccgcgacctc
cctctccagATATCCACCACCCTGGCCCCCTCCTGGACGAGAGTCGGGCT
CGTCTGGCTTCCCTAGCCCACGGGACATGGAGGGAGGAGCTGGGGTGGAT
CGAGGCAAGGGAGTGGAAGAGCGATATTTTCGACCCCAgtaggtttagaa
ggagggagggagggagggagggagggagggagggagggaagtagaccggc
aacgaggcttttgctctaccacctatcatcccatatcctccctccctccc
tccctccctccctcccttcctctccccctccctccgtccagACCTCGTCT
CCCTGCATGCCGCCCGTCTGCACTTCCTTGCGGCTGCCCTTCACAATCGC
CTTCTTTTTTTCAACCTCAACCATCCCACCCCCGTCCAAGACCTGAAGCG
CCTGTCAGgtacgccctccctccctcccttcctccctccctccctccctc
cgtctgtccaaagttgacccctcctctccctcgctccttccctcgctccc
tccctccctatgcccctccctccagCGCTCCTCCACCTTGCCTTACAAGA
GGACCTCGGCCTCCTCCCCGCGGTCATTGCTCATAAGCGTTGCCTTCTCT
CGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGCGGGAGGATGGCTTG
GGCCTGTGGAAGCTTGACGTGGTTTACGCCCTCGTTCGTCTGGCGGCTCA
CATGCTGCGGCAGGACGGAGAGCGGGAGAGCGGGAAGGAGGGAGGGGCGG
CATATTCGAACTTTTTGACTGCTGTTTGTGAGACGCTGGACTTACGGAAA
GAATGGCAGGCGCGGGCCGCAGGAAAAGGAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGTGTAAAGGATGGATGGCAAAGCGGCTTC
TCCTTCGACTCGAGACCGAGGCCCTGGAAACGTTGAATCGTCACCACAAg
tacgtcaccctccctcctttcctccctccctccctccctccctaaccccc
tccttccattcacccagcaacttcctctcttcctctccctccctccctct
ttccctactttcccttcctcccccctccttccctcccttctttcctagGA
GGGCCCAACCCCAAGCACTTCACCTCCTGTCCCTCTGCGGCCCGGGAGAT
GAGGCCTTGGCCGCTCGCCTCCTCCCGCTCGCCTTTGCACAGGGTGGCCA
GGGCAAGGGGGAGGATGAGGAAGGGAGGGAGGAAGGGCAGGTGTTGCTGC
GAATGTTCACGGCGGCCATGGGCCAAGAGGAGGCGATGCGCCAGTCGCGG
CTGCTCTACGACCGAGgtgaagaagggagggagggagggagggagggagg
gagggagggaagaagacacagaaaggatattcgccgatatttcagcctct
gacgtcaccttcgaaccactcctccttaccctcagGTCCGCCCTTCGCCC
TCCCCTCCCTCCTCCTCTCTCCTTCCCTATCCCCCCTCCCCACCCTCCTC
CCCCTTCCCCCTCACTGGCTCCTCCTCCCTCTCGCCTCCTCGTCCTCCCC
TTCCTCCTCCTCGTCCTCCCTCGCCATTCGCCTCCTCTCCTCCTCCCTCT
CCTTTCTTCTCGGTCCTTGCGTGTGGCGAGCTTACACCTCCCTCCTACCT
CCCGGCCTCCTCCTCTACTACTGCATGTGTCTCTCTCTCTTTCTCCCCGA
GGTCCTCGGAGACGATAATgtaaagacagagggagggagggagggaggga
ggaagggaataagaatatatattacatatatgtgcatatgtgctattttc
atgtggatgctttgttaagtcctcctccctcgctccctcttctcttcctc
cccccctttctgccttcctgacagATCATCTCCCATTTCCATGTCTTTGC
TCGGCGATCCCTTGCCCTCCTCCCCTCCCTCCCTCCCGCCCTCCCTCCCC
TTCTTGAAGCCGGCGCCGCTCTTGCCGAGTGCGACGAAAAAGTCGAGGAC
GAGAGAGGGAAAGCAGGAGGAAAGGAGGGAGGGAGAGGGGTTGCGGAGGA
AGAGAAGGGGCTTCCGGGCTTGGTCGAGGACATATTGATCCGCGTCAGTG
AGGGAGGGGGGAGCGCACCTGCTGTATGGAGCCTTCGgtaggtctctagc
cctctctccctccctccctcccttcctccttccctttctccctcactccc
ttttcccctctcattctcatcatcttggttactggatagggagacgctgt
ctcgtttctctcaccttccatccctccctcccttccctccctccctccct
cagCCTCCTCGTCCGCCGCATTTGGGGCGAGCATCCGTGCCGCCTGCGCG
TGTGGAAAGACTTGCACAAACAGGGTCTACTGCACCTTTTGGACCAGGAG
GGAGGGAGGGAAGGAGGGAGGGAGGACGACGACGCGGACTTGTATTTGGA
GCCGCCGGAGAAGAATGTATCGTTTTTGGAGgtgagcggctggaaaatgt
ccctactagatgacaagctacaacctactcaactcatccacctttctccc
tcactccctccttgcctccctttcccccctccctagCTCTATACCAATTT
TCTCGCAGGCACGCCGGGCGGGGCCGCTCCCCTCTCTCCTGAACGCGGCG
GGTTGGCGTGGTTAAATGCTCTTCGACACCTCGCCCACCATCTATGGGGG
GATGAGGAAGGAGGGAGGGAGGGGCGGAGAGAGCGAGGGCTGGGAGAAGG
GCAAAGGAGAAGGCTTGCCAAGGTGGTGAGGGGGACGGAGGCGGACTCGT
CGACGGTGACATGTCTATTGGGATGGAGGGAGGGGCCAATGGGAGGGAGA
GAAAGAGGGAGGGTAGGAAGGAAAAGTGGGACAGTGCCGGCTCTGGTGGC
TGCTGTGGCGGACTGGGCGAAAGGAGTGAAGGAAGGTACGGTGACATGTG
TGTTGAGGGAAATGGAGAAGGACGCCTGGCGGAGGGTGGTGGAGGAGGAG
GGAGAGGCACATGTCGTGGGAAAATGGTGGGGGAGCAGGGACGTGTAGGC
GCGATTTGGGGATGCTTAGGCAATTTTAAGACATAAGAGAAAAATAAAAG
CATTAAGTTAACGAAAGCAATGCGCG back to topprotein sequence of NO17G00210.1 >NO17G00210.1-protein ID=NO17G00210.1-protein|Name=NO17G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1258bp
MHAIDTLLDDQEREKLAWTRNSSSSSSGGGGSGEGGEEGGREGGWIRVDL
EGRLMDAGAEELVPTHSGLYHNPEQRPGYTLTHLCDTARSTDRRQRALAL
RTWSRLLLNPSLLPALLARVKKGKRDGLLPGELALVLLTGLDDRHKAARL
SAVPALAACLLDGKEERMKDEVLFDLSFGQELPPPSLGPYARWPVSSSLP
SSSSPEDPANSDDDQEGEEQPPRDASSPPSSLPSSLPSSLPSSLVERKPS
SVSRASSLFRKDGPVALFRLGGVRKLGEMLRRRVGGGEGEEGGEDEECVE
AVCQLLGWAAARGKECGEAVAFAKGTLDALERAVMVRHDPRALRLLRRLA
QSSRHVCLELAGRGFLRASKGLLGLEGGHEGGRGEEEGKDEDEEEDSLAS
APATTGTSSLPSLPPSLPPSLPACKIEVLRLWRVALAFGADVEGVLDVLA
VVGGMRSSSSGLSLTPASWASPSSSSSPSSSSLFLPHSWPASLLTSFYRA
LETASYALAATTAVGAAGAAATVRQTSLSSSSAAAGGAGTGAERIPTSKN
KENEKREREREEKDEKDIHHPGPLLDESRARLASLAHGTWREELGWIEAR
EWKSDIFDPNLVSLHAARLHFLAAALHNRLLFFNLNHPTPVQDLKRLSAL
LHLALQEDLGLLPAVIAHKRCLLSEGGREGGREGGREDGLGLWKLDVVYA
LVRLAAHMLRQDGERESGKEGGAAYSNFLTAVCETLDLRKEWQARAAGKG
GGREGGREGGREGGCKGWMAKRLLLRLETEALETLNRHHKRAQPQALHLL
SLCGPGDEALAARLLPLAFAQGGQGKGEDEEGREEGQVLLRMFTAAMGQE
EAMRQSRLLYDRGPPFALPSLLLSPSLSPLPTLLPLPPHWLLLPLASSSS
PSSSSSSLAIRLLSSSLSFLLGPCVWRAYTSLLPPGLLLYYCMCLSLFLP
EVLGDDNIISHFHVFARRSLALLPSLPPALPPLLEAGAALAECDEKVEDE
RGKAGGKEGGRGVAEEEKGLPGLVEDILIRVSEGGGSAPAVWSLRLLVRR
IWGEHPCRLRVWKDLHKQGLLHLLDQEGGREGGREDDDADLYLEPPEKNV
SFLELYTNFLAGTPGGAAPLSPERGGLAWLNALRHLAHHLWGDEEGGREG
RRERGLGEGQRRRLAKVVRGTEADSSTVTCLLGWREGPMGGRERGRVGRK
SGTVPALVAAVADWAKGVKEGTVTCVLREMEKDAWRRVVEEEGEAHVVGK
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