NO17G00190, NO17G00190 (gene) Nannochloropsis oceanica

Overview
NameNO17G00190
Unique NameNO17G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2913
Alignment locationchr17:65325..68237 +

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Properties
Property NameValue
DescriptionGpi16 subunit, GPI transamidase component
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:65325..68237 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0042765GPI-anchor transamidase complex
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0016255attachment of GPI anchor to protein
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR007245PIG-T
Homology
[Close]
BLAST of NO17G00190 vs. NCBI_GenBank
Match: EWM20338.1 (gpi transamidase component gpi16, partial [Nannochloropsis gaditana])

HSP 1 Score: 145.2 bits (365), Expect = 7.900e-31
Identity = 88/111 (79.28%), Postives = 97/111 (87.39%), Query Frame = 0 
Query:  559 SPSLLSFSWEPSRTEEPSLLIYTVSLPPSLPPSLLL-VSWHFSLRFLAFESFPPNPMRGLEIPPLVVWVEGGKXXXXXXXXXXXXXXXLLIDVPTPDFSMPFNVITLTCTV 669
            +PSLLS SW PS+ + PSLLIYTVSLPPS   +  + VSW FSLRFL FE FPPNPMRGLE+PPLVVWVEG KXXXXXXXXXXXXXXX+LIDVPTPDFSMPFNV+TLTCT+
Sbjct:    3 TPSLLSSSWRPSKNQSPSLLIYTVSLPPSSSSATYVRVSWRFSLRFLPFEEFPPNPMRGLEVPPLVVWVEGEKXXXXXXXXXXXXXXXVLIDVPTPDFSMPFNVVTLTCTL 113
[Close]
BLAST of NO17G00190 vs. NCBI_GenBank
Match: EWM20336.1 (Gpi16 subunit, GPI transamidase component [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 7.900e-15
Identity = 144/356 (40.45%), Postives = 166/356 (46.63%), Query Frame = 0 
Query:   12 LLVALLRV-IDTLATDTLHETLRVRRVGRGKNRILLQASFNLTWHFNPDDLHSCPPLSPFCAPDLFPASLALLLHRHDVQTLHLRLSNGPWDRTAWGSLPLXXXXXXXXXXXXXXXXRLHAPLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWRALLNDLGALFHLPLGQVGAEAAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFYGHLPSPAPLCIDTLSHPLFHSFLSPC---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFLAGLSPRERALLQADHLSYGMSLRRVCG 364
            L V L ++ + T A +T HE LRV R+GR K R+LLQA FN TW  +  ++ +CP  SPFCAPD+FP  L                               XXXXXXXXXXXX     + A L                               QW+ALL DLG  F LPLGQ   E   EG                                                               XXXXXXXXXXXXXXXXX++  HL SPAPLC+DT+  PL H+ LSPC      XXXXXXXXXXXXXXXXXXXXXXXXXXXX      + PRE A L A+HLSY + +RRVCG
Sbjct:   23 LAVLLYQIELRTDALETHHELLRVHRLGRRKCRLLLQAFFNTTWEISLPEVSACPSSSPFCAPDIFPLPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPGSEIWATL--SDPPSPSNSINRSFAAAFSADARASDGKRQWKALLGDLGGFFQLPLGQGAVEGGREG---------------------------GRAGMGHAGELPSPLSTLFSCGEKGDEEGFLLSPTNXXXXXXXXXXXXXXXXXLYRAHLTSPAPLCLDTIQRPLLHALLSPCSRAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIHPREMAFLTAEHLSYALRMRRVCG 349
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BLAST of NO17G00190 vs. NCBI_GenBank
Match: ORY37226.1 (Gpi16 subunit, GPI transamidase component [Rhizoclosmatium globosum])

HSP 1 Score: 69.3 bits (168), Expect = 5.500e-8
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 0 
Query:  490 GLRKGVMRTWLQNHHPKETLQATIMETIPYFLVPSLPYSLQLETRPAKATPPSLVPSFPCPSNSSLSSPSPSLLSFSWEPSRTEEPSLLIYTVSLPPSLPPSLLLVSWHFSLRFLAFESFPPNPMRGLEIPPLVVWVEGGKXXXXXXXXXXXXXXXLLIDVPTPDFSMPFNVITLTCTV 669
            G  +G     L N+ P      T++E +P++L       L L T     T           S+++    +P++            PS+L ++++LPP+   S   + + F   F+ +   PP+  RG +IPP V+ V   K               LLI +PTPDFSMP+NVIT+TCT+
Sbjct:  339 GRERGGFNLRLTNNDPTAPQSVTLLEVLPWYL------HLYLHTLQTTTT---------SVSDNTRILATPNITQRYQLSIPRSRPSILEFSLALPPA---STTTIHYEFDRAFIKYTEHPPDANRGFDIPPSVLTVHTEK-------PYRIFSEILLIALPTPDFSMPYNVITMTCTI 492
[Close]
BLAST of NO17G00190 vs. NCBI_GenBank
Match: AAI54870.1 (pigt protein [Xenopus tropicalis] >ATO97955.1 phosphatidylinositol glycan anchor biosynthesis class T, partial [synthetic construct])

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-7
Identity = 56/200 (28.00%), Postives = 85/200 (42.50%), Query Frame = 0 
Query:  490 GLRKGVMRTWLQNHHPKETLQATIMETIPYFLVPSLPYSLQLETRPAKATPPSLVPSFPCPSNSSLSSPSPSLLSFSWEPSR-TEEPSLLIYTVSLPPSLPPSLLLVSWHFSLRFLAFESFPPNPMRGLEIPPLVVWV--------------------EGGKXXXXXXXXXXXXXXXLLIDVPTPDFSMPFNVITLTCTV 669
            GL+ GV+ T + N+HP       ++ET+P++L     ++L + TR  K   PS +                      +EP++  + P LL   + LPP+   S+  +S  F    L +  +PP+P  G  I P V+ V                                       LL+++PTPDFSMP+NVI LTCTV
Sbjct:  362 GLQSGVINTMVFNNHPYRAYPVMLLETVPWYL-RLYVHTLTITTR-GKENKPSYI---------------------HYEPAKDRQRPHLLEMLIQLPPN---SITKISIQFERALLKWTEYPPDPNHGFYISPSVLSVLIPSVINQKTDELEESTLFSTLFPSSDGSSYFMRLYTEPLLVNLPTPDFSMPYNVICLTCTV 535
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BLAST of NO17G00190 vs. NCBI_GenBank
Match: XP_012827251.1 (PREDICTED: GPI transamidase component PIG-T isoform X1 [Xenopus tropicalis] >OCA21204.1 hypothetical protein XENTR_v90025433mg [Xenopus tropicalis])

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-7
Identity = 56/200 (28.00%), Postives = 85/200 (42.50%), Query Frame = 0 
Query:  490 GLRKGVMRTWLQNHHPKETLQATIMETIPYFLVPSLPYSLQLETRPAKATPPSLVPSFPCPSNSSLSSPSPSLLSFSWEPSR-TEEPSLLIYTVSLPPSLPPSLLLVSWHFSLRFLAFESFPPNPMRGLEIPPLVVWV--------------------EGGKXXXXXXXXXXXXXXXLLIDVPTPDFSMPFNVITLTCTV 669
            GL+ GV+ T + N+HP       ++ET+P++L     ++L + TR  K   PS +                      +EP++  + P LL   + LPP+   S+  +S  F    L +  +PP+P  G  I P V+ V                                       LL+++PTPDFSMP+NVI LTCTV
Sbjct:  362 GLQSGVINTMVFNNHPYRAYPVMLLETVPWYL-RLYVHTLTITTR-GKENKPSYI---------------------HYEPAKDRQRPHLLEMLIQLPPN---SITKISIQFERALLKWTEYPPDPNHGFYISPSVLSVLIPSVINQKTDELEESTLFSTLFPSSDGSSYFMRLYTEPLLVNLPTPDFSMPYNVICLTCTV 535
[Close]
BLAST of NO17G00190 vs. NCBI_GenBank
Match: AAH99698.1 (pigt-prov protein, partial [Xenopus tropicalis] >AAI21203.1 pigt protein, partial [Xenopus tropicalis])

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-7
Identity = 56/200 (28.00%), Postives = 85/200 (42.50%), Query Frame = 0 
Query:  490 GLRKGVMRTWLQNHHPKETLQATIMETIPYFLVPSLPYSLQLETRPAKATPPSLVPSFPCPSNSSLSSPSPSLLSFSWEPSR-TEEPSLLIYTVSLPPSLPPSLLLVSWHFSLRFLAFESFPPNPMRGLEIPPLVVWV--------------------EGGKXXXXXXXXXXXXXXXLLIDVPTPDFSMPFNVITLTCTV 669
            GL+ GV+ T + N+HP       ++ET+P++L     ++L + TR  K   PS +                      +EP++  + P LL   + LPP+   S+  +S  F    L +  +PP+P  G  I P V+ V                                       LL+++PTPDFSMP+NVI LTCTV
Sbjct:  359 GLQSGVINTMVFNNHPYRAYPVMLLETVPWYL-RLYVHTLTITTR-GKENKPSYI---------------------HYEPAKDRQRPHLLEMLIQLPPN---SITKISIQFERALLKWTEYPPDPNHGFYISPSVLSVLIPSVINQKTDELEESTLFSTLFPSSDGSSYFMRLYTEPLLVNLPTPDFSMPYNVICLTCTV 532
[Close]
BLAST of NO17G00190 vs. NCBI_GenBank
Match: NP_001017115.1 (GPI transamidase component PIG-T precursor [Xenopus tropicalis])

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-7
Identity = 56/200 (28.00%), Postives = 85/200 (42.50%), Query Frame = 0 
Query:  490 GLRKGVMRTWLQNHHPKETLQATIMETIPYFLVPSLPYSLQLETRPAKATPPSLVPSFPCPSNSSLSSPSPSLLSFSWEPSR-TEEPSLLIYTVSLPPSLPPSLLLVSWHFSLRFLAFESFPPNPMRGLEIPPLVVWV--------------------EGGKXXXXXXXXXXXXXXXLLIDVPTPDFSMPFNVITLTCTV 669
            GL+ GV+ T + N+HP       ++ET+P++L     ++L + TR  K   PS +                      +EP++  + P LL   + LPP+   S+  +S  F    L +  +PP+P  G  I P V+ V                                       LL+++PTPDFSMP+NVI LTCTV
Sbjct:  363 GLQSGVINTMVFNNHPYRAYPVMLLETVPWYL-RLYVHTLTITTR-GKENKPSYI---------------------HYEPAKDRQRPHLLEMLIQLPPN---SITKISIQFERALLKWTEYPPDPNHGFYISPSVLSVLIPSVINQKTDELEESTLFSTLFPSSDGSSYFMRLYTEPLLVNLPTPDFSMPYNVICLTCTV 536
The following BLAST results are available for this feature:
BLAST of NO17G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM20338.17.900e-3179.28gpi transamidase component gpi16, partial [Nannoch... [more]
EWM20336.17.900e-1540.45Gpi16 subunit, GPI transamidase component [Nannoch... [more]
ORY37226.15.500e-829.05Gpi16 subunit, GPI transamidase component [Rhizocl... [more]
AAI54870.16.100e-728.00pigt protein [Xenopus tropicalis] >ATO97955.1 phos... [more]
XP_012827251.16.100e-728.00PREDICTED: GPI transamidase component PIG-T isofor... [more]
AAH99698.16.100e-728.00pigt-prov protein, partial [Xenopus tropicalis] >A... [more]
NP_001017115.16.100e-728.00GPI transamidase component PIG-T precursor [Xenopu... [more]
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00190.1NO17G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00190.1NO17G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00190 ID=NO17G00190|Name=NO17G00190|organism=Nannochloropsis oceanica|type=gene|length=2913bp
AAGTGTAAAGTGCACAACGACAGATTCAATAAGCATGCCACCACCACTGA
GCGCCTGTACGTCGTAAGCCATCCTCTTCCCGGATACTCCAGTTATCATC
CCTGTCTGGCGATGATGCTTCTGCGCCTATCCTGCTGCAGCTTCCTCCTT
GTCGCCCTCCTCCGGGTCATCGACACACTCGCCACTGACACGCTGCATGA
GACCTTGCGCGTCCGTCGCGTGGGCCGAGGGAAGAACCGGATCTTGCTGC
AGgtagtgccatactcctttggccctctatatcctcctccctctctcctt
tccccttccctcctcttacgcccatcgcaccttttatccatgcagcgtct
taccaaggccccctccatgctttgtagtatatattattgttttgccaata
gacacttgtcagcaccttcgtcaaccttccttacatccatcgtccatctc
gtctttccctccttccctcctttcctctccctctctccctccctcccctt
tgacagGCCTCCTTTAACCTCACCTGGCATTTCAACCCCGATGATCTACA
TTCCTGCCCTCCCTTGTCCCCCTTCTGTGCCCCTGATTTATTCCCAGCAT
CCCTGGCCCTCCTCCTTCATCGTCACGACGTCCAGACTCTCCATCTCCGT
CTCTCCAACGGCCCCTGGGATCGGACCGCCTGGGGCTCCCTCCCTCTCTC
CCTTCCCCCCTCCTTCCCTCCCTCCTACGGATCCGAGGTCTGGGGTCGAC
TGCATGCCCCTCTCCGTCCTTCCACCACCACTGCCTCCGCGGACGATAGC
AACAGCAGCAGCAACAACAGCAACAGCAGCAGCAGCAGCAATAAAGAAGG
GAATAAGCAATGGCGGGCCTTGCTGAATGACTTGGGGGCTCTCTTCCACC
TCCCTCTAGGTCAAGTCGGGGCCGAGGCAGCGGGGGAGGGAGGGAGGGAG
GGAGGGTCAGCGGCAGTGATTGGTGGCGTGGGTGGTATCATCCGCCCCCC
TGCTTTTTTCCTCCCTGAGGTGGAGGGAGGGAAGGACGATGGGGGGGAAG
GAGGGTTTGTACTTCTCTCTCGCAACGGCAGTTCGAAACAAGGAAATGAA
AGCGGGGAAAGCTTTATCTCCTCATCCTCGTCCTCGTCCTCGTCCTCGTC
CCCCTCTTTTTCCACCACCACCACCAGCAACGTTTTCTACGGCCACCTGC
CCTCCCCTGCTCCTCTCTGCATCGACACCCTCTCCCACCCCTTATTTCAC
TCATTTCTCTCTCCCTGCTCCTCCTCGTCCTCCCCCTCGTCTTCATCCCC
TTCGTCCTTCCGGAAGACTCCGGGTCAAGGAGGGAGGGAGGGAGGGAGGG
GTGGAGGGGTAGCGTCATTTTTAGCGGGGCTCAGCCCGAGGGAGAGAGCC
TTGCTGCAAGCCGATCATTTGTCATATGGTATGAGCTTGAGGAGAGTGTG
CGGgtaggtggagggagggagggagggagggagggagggaaaatatttat
tcgagagtggtcaggtggatggaagggaaagggaaagagggaggaaggga
gggagaggaaaagagaaaggagatgatatgtacacttcttctcacattct
gcaatctccctcttttcacagGGGCCTAGACAGGGAGAGTAGGAGCTGCC
TATCTCCCTCCCTTCAGCTGCAGCAGACTTTCACCGTCCTCTTGCCATTT
GGACGCGACGAGGAGGAGGAGGAGGAGGAGGGAGAGAGGGAGGGAGGGAG
GAGAAGGAGTCTCCACACCCATCACTACCAGCAGGAGCAGTTGCGTGGTA
TTTCTTATCCCCCCCTCACGGCCTGTTCCCTCGCCGCCTCCTCCACCCTC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCCCCTTCCCCACGGAGGG
TTTCGTCATCCAGCGCGAGGAAGACAAGGAGGAGGGAAGGAGGGAGGGAG
GAAAGGAGGCAGGGCAGTACGTCTCAGTGGATCGGAGTAGGGGAAAGAAG
GGTTTGAGGAAGGGCGTGATGAGGACGTGGCTACAAAATCACCATCCGAA
GGAGACCCTGCAAGCGACGgtgggagaggagagagagagggagggaggaa
gggaggaagggagggaaaggccgctatctctgagcatccctatactgctg
gtcgaaacgatcgcactcacttgcctttcctccccccgtgcctccctccc
tccctccctccctccctccctcccttcctcagATCATGGAGACTATTCCC
TACTTCCTTGTTCCGTCCCTCCCCTATTCCCTCCAACTCGAGACCCGGCC
CGCCAAGGCCACCCCTCCTTCCCTCGTGCCCTCCTTCCCTTGCCCCTCCA
ACTCCTCCCTTTCTTCCCCCTCGCCCTCCCTCCTCTCCTTCTCCTGGGAG
CCCAGTCGGACCGAGGAGCCCTCTCTTCTCATCTACACGGTCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCTCCTTGTTTCTTGGCACTTCTCCCTCC
GCTTTTTGGCCTTTGAGAGTTTCCCGCCCAACCCCATGCGAGGCTTGGAA
ATCCCTCCCCTCGTAGTATGGGTGGAGGGAGGGAAGGAGGGAGGGCTAAT
GGGGGGGAGGGCGGGCGGGAGGGAGGGAGGGTTGTTGATCGACGTCCCCA
CACCAGACTTCTCGATGCCGTTTAATGTGATCACATTAACGTGCACCGTG
GTGGCTTTCTTTTATGGGAGTATGATGGGGGTGGTGGTGAGGAAGGGGAG
GAGGAGGAGGAGGAGGAAGAAGAAGGGAGGGCAGGAAGGGTGGAAAGAGC
GGGTGGGGCGGTGGTGGAAGAGGAGAAGGAAGGGTGAGGAGGAATGGCAG
GAAGAGCCAAGCGAGACATAGGCGCGGAGGAAAAAATGAAATAAAATATG
CATGCGAGTACGA
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protein sequence of NO17G00190.1

>NO17G00190.1-protein ID=NO17G00190.1-protein|Name=NO17G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MMLLRLSCCSFLLVALLRVIDTLATDTLHETLRVRRVGRGKNRILLQASF
NLTWHFNPDDLHSCPPLSPFCAPDLFPASLALLLHRHDVQTLHLRLSNGP
WDRTAWGSLPLSLPPSFPPSYGSEVWGRLHAPLRPSTTTASADDSNSSSN
NSNSSSSSNKEGNKQWRALLNDLGALFHLPLGQVGAEAAGEGGREGGSAA
VIGGVGGIIRPPAFFLPEVEGGKDDGGEGGFVLLSRNGSSKQGNESGESF
ISSSSSSSSSSSPSFSTTTTSNVFYGHLPSPAPLCIDTLSHPLFHSFLSP
CSSSSSPSSSSPSSFRKTPGQGGREGGRGGGVASFLAGLSPRERALLQAD
HLSYGMSLRRVCGGLDRESRSCLSPSLQLQQTFTVLLPFGRDEEEEEEEG
EREGGRRRSLHTHHYQQEQLRGISYPPLTACSLAASSTLFLPPSLPPSLL
PFPTEGFVIQREEDKEEGRREGGKEAGQYVSVDRSRGKKGLRKGVMRTWL
QNHHPKETLQATIMETIPYFLVPSLPYSLQLETRPAKATPPSLVPSFPCP
SNSSLSSPSPSLLSFSWEPSRTEEPSLLIYTVSLPPSLPPSLLLVSWHFS
LRFLAFESFPPNPMRGLEIPPLVVWVEGGKEGGLMGGRAGGREGGLLIDV
PTPDFSMPFNVITLTCTVVAFFYGSMMGVVVRKGRRRRRRKKKGGQEGWK
ERVGRWWKRRRKGEEEWQEEPSET*
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Synonyms
Publications