NO17G00170, NO17G00170 (gene) Nannochloropsis oceanica

Overview
NameNO17G00170
Unique NameNO17G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5331
Alignment locationchr17:59673..65003 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:59673..65003 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR007846RRM_NUP35_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO17G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00170.3NO17G00170.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00170.2NO17G00170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00170.1NO17G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00170.3NO17G00170.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00170.2NO17G00170.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00170.1NO17G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00170 ID=NO17G00170|Name=NO17G00170|organism=Nannochloropsis oceanica|type=gene|length=5331bp
CCAGCAGCCTCGTCCATCCTTCCTGTCAATTCTTGCTCATTTCTTCTTTC
TCCCGAACAACTTTTTGCCCTTCATAATATTTTGTCTACTTGATTATTCA
TTTTCATGATCACAAATCTGTATTCGCCCTCTTTATCTCATATCACAATA
ATCTTAGTCTCATATCACACCCTCTCTCCCTCCATCACTCCCCCCATCCC
TCCTCATATCCCCTGTCTAAGGACGTGGAATGTTCTAAGGGCGTGGAATG
TGCGTGAGGGATTCTCTGAATTCTCTTGACATCTCTAAGTAGGGCTTCAA
GTGCGGTAAAAAAGTTTCATCATAGCTCCAGTCCTCCACAAGGGGCTGCC
CCGGCACAGGTTTCCTGTGTGAGATCAAGGAGAAGAGAAAGGGAAAGAGG
GATTAATATGTGGATGGGGTGCACTGCTACTGCTTGGCTTCATGGAAAGG
GGACGGAGGAGGGGCGTGGGAAGAGGCACACTACGACGGCTTAGCTGAAC
CCCCTCAGAGACTCTGCACAATCAGTGTCACGTGATGAAGATATAAAAGG
AAAAGACAAAACATGGAGACACAGAAGAGCTCAAGGAAACGTGGCCCAGT
AGATTGCGCCATGATGGCCGTAGCACCGACACGCGACATAGAGACACAAA
TAAAAACGTACCAGACGTACACCCATGCCTCGTGCTCACCCACGGGCAAA
TGCGGCGAGGCTGCCGAGACAGTTATCTTGGTGGCGGTCTTAATGTAGTC
GTCCCCTTCAAAGGCGTCGAAAATTTGCTGTCAGAGAAGGAAGGAGGGAG
GGAGGGAGGGAGGAAATAGAGGGATATTCGAATGCACATCGGATAATGCG
CCCTACCCATTTCATGTCTTCCACCTATCTGCCCATTTGATTTCGACACG
ACGTACCACCTCCGAGTCCAGCAATTCTTTTACGAGGAACCCCTCCACGT
TCTTCGACGGGTCGGGAAGGATGCCCGGATAAACTGCCGCGTGGAGGGGG
ACGGCAAGAGAGGCGTGAGAGGGACGGAGCAGGAAGCAGGAATAAGTGAG
TAAGTGATCATCAATCTAGCTTCAATGTATGGTTACTGTCCTTACTCACT
GCAGTATACCCCAAAAATATTATTCCGACGTTTGCTGTTGTGAAAGATGC
CCGTCTTTTCCCCTCAGTACCTGCCCCTCCGTATCTGCCCCTCTGTACCT
CCCTACCTCCCCTCAAACGCACCTTGGTCCGGCACCCGCCACCGTCGATA
CCCTGCCAATGTGCCCGGTACCAACACTGGAACACGATCTAGAAGCTCCT
TGAGGACCTCGGGCGACATGAGCGAGCCGTAGACGAAGTGCAGCTTCATT
TTCGGGTCGTTACGCTTGGGGGAGATGGGCGGGATTGAGAGAAGAGTTAG
GGCTACGAGGACTGAAGGCAGTGGTTTTGGATCAAGAGAATCTCTCTTGA
TTGTCCTGTCGTGAATGTAACGTGTGGTATAGTCCGCATTTAACGAACTA
AATGTGAATAACGAAGAGTAATTGGACAAGTCTCGTTACGCCTCCGCTGT
CTCGCCAACGCGACCGCCTCCTCATCCCCATCATGCTTCTTTTTCGTCTC
CTCAGGTTTGCGACCAGCCAGCATCCCACCGACAGCAGGCACGAGTAACC
ATGCACGCAGATAAATGTGCCGCACGATCGTAGTTTTCGGACGGGCTGCT
GGCGGGCGTCAAGGCCCTTGCGGTGGCTTGATTGGCTCGGCACTTCGCTT
CGTGCCCTCCCTCGCTTTCATTACCATCATTCTTCCACTGCTACGTAACT
ATCAGCAACCAGCACACTCAAACCACACGACACAAGCACAGGTACAGAAG
TTAGGTGGCTGGGTAGCACGTCAAGTCCGTCCAAGCACACCCAGAAGACA
TGTAAGTCACAAGTCACGCCCGCATTTGGTTGGTTGCCTCCACCACCGTC
TCACCAAGGTTTCCCTCCCTCCCTCCCTCTTTCCACCACGCGCAGGTACC
ATGACGCGTACCGTTCCCCGCAACCGTCTGGCGCGTACTATCGCGGGGGG
TGCATACGGAGGAGGTAAGAGGAGAATGTGGAAGATTCCCGGAGTAGGCT
GTACACGTAGTGATGACAGGGAGAATAATTTTCAGGCCTTCCTCTATAGC
TTAGTGGGTCATGGTGGTTGTATTAATGACGCACGTTTTTTCATTGTCTC
CTCGCTCCTTCCCTTTAAGCGCCAGCCAGAGTCCCTCCTCTCCCCCGGCA
TAGACCCTCACGGCAACGGGCACTTCGCCTCTCCCTACGGTGCGGCGGCC
TATGGAGGAGGAGGAGCAGGAGGAGTGCTGGGTCGGCAGCGGTCGTCAGG
CGGCGGAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGGGATGTATC
ACTCGTCCCCGCCACGAGCCTCTTTTCGgtacgaatgagagagggaggtt
ttggaaagagggaggaagtgaggggggaggaggacatgttctgtgtagcg
tatgtgtgtatggagtcaagtgcaccccatcttgctcactgatttctctc
cttccctcttttccccatacagCGAGCCATCCTACGGCGTAGGGGCAGGG
AATCCCCCTGACCTTGCGGCGGGTGGCTCTCCGCACTATTACCAACAGCA
CCAGCACCAGCAGCAGTTCCAGTACCAGCAGGGTGGCTACATGCATAGCC
CGCCTTCTCCGGgtaggtggggaaggaataaaagggggaaggaaagaggg
agaaagggatggaaggacagacacaagctgagaagacgagtcccgagaag
aagagaagagacatggctcaactcttcacatataccccccccatccgctt
cctccttcgctccctccctctgattccttgaacgcagGCTACCCCTATCA
AGCAGGGCCGATGGCTCCTCCTTCTCCCTCCAGGGGCTTGGTCCGCTCTA
Ggtaggtgggaagggaaggagggagggagggagggagggagggcatgcgg
atcttcgtcttcgcagttggtggcgagtatgatttattggcatgacgacc
ctccccctctccctccctccctccttccctctatctcctcccttctcaag
GCACGGCGTTGTCGATCAATCGTTTTCCCGCGGCCTGACCTCCCGCAAGA
CCCGGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCTACAGCCCTTGATG
CTCCCGGCAGGAGGGGAGGAGATCGGGATCGACGGAGGGATGGACGgtaa
gagagcaggaaaggaaagaggggaggaggtagggaaggaaggagggagga
aagggaagggacgcgtatcaagtggaagggggagggaaggagggagggaa
ggagggagggaagatagcaccactagttggggcatacctgatatacacga
caccactgactgactgaggcatatctaatacgtcccgggaaggaaacaag
acttaagacggcgaaggaaggaatctgaatatgaggaagtagtaggtggt
agtataaacgactacgcatatatatatatatatatactgactgaggcata
cctactataaacgactcagGCCTTGCACCCCATTCCCCTCACCGCGGATT
CTCCTCCTCCTCCGATCACGCTGCTTCTGCTGCTGCTGCTGCTACTGCGG
GTGGGCTGGGGGGTGGGTTCTACGATGACGGTCCTCCTCCGACAAGCTCG
TTGATGGATTTGGACGAACATGACGCCAATAGgtagggagggaggaaggg
agggagggagggagggagggaaagagaagtgagtgtcgtcttgcagaagt
gcaccaggtgaccgctaataagacctccttgtcttccttcctccctccct
tccccctccgctcccccagGAACTCCCGCCTTTCCTCGCAGCAGCCGCAG
CAGCAGCAGTTGGCCTCAGTGAGAGAACCCGACCATGACGCGTCCAGgtg
cggaggaaatgagggaaggaggaacggagagaattagggaggcacgaaaa
attcggatgtggagatggtcatgctggcgaggagagaggaggaggaagga
agggagggaaggcaggaccgtagcataccttgccatccttttactatcta
tctacacatatatatatgtgtgtgtgtgcgtgtgtgtgtgtggtttgtgt
ggtttgtgtggttgtgtgtgtgtgtgtgtatgtttgtttgttataattct
aaatgtcatgacgctatcaccaccacccacccccacccccaccaccattg
ctatcattctaatcatcgctctaatcacattgattcagGTGGGGCGCCAC
GGCGGGTCAAGCGGCCTGGGCGAGCTGGGTACTAGTCTTTGGCTTCCCGA
GAGAGgtgagggagggagggagagaggaaggaagaacaaggatggcaaga
ttcccaagcagcctgaagactcttattcgtagaaattgactcaatttatc
cctcatttcttctctccttccttcgctcctccctcaccctctccttagCT
CCGCGAGGCCGTCATGAATCAGTTCGCCCTTTTTGGGAGCCTTCAGGAGA
CCGTGGCGGAGGGCAACTGGCTACTGCTCAAgtgcgtgtgcaacagataa
ggcggggaatggggaataaatgtatgactggttggagagcctgcggggag
cacttagttacctgctcctttcctcctgattctttcttcattccctcccg
tcctccccccctccttcgttctcgttcccagGTACTCCACGCGCGCCCAA
GCGGAGAAGGCCGTGGCCCAAAACGGGACCTTACTTCACACCGAGGCCCC
TCAAGGCAGCAGAAGCAGCAGCAACAGTAGTAGTAGTGGGCTGTTGCTTG
CTGTGCAACGTGTGACGCCTGATGTAATTCGACGGTTAGGGGTGGCCATC
GGCCCGCTGGGAGGGGTAGAAGTCGTCCGGCGGGCAGACCGAGGGAATGC
TTCCGTCTTGTCCCCGCACAAACATCAACCACAAGAAAATCTATTGCGTC
AACGCCGGGGGTCGCTGGGACGAGGGGGGAGGCAAGGAGGAAGGGGGGTG
ATGAGCCCAGAGGGCTTTGCTATCAACGACTCGGACTTGCTCAAGACGCC
AGTGGTTGAACGCCCGTGGTGGTTCCTGCTATGGGTCGCTATTTGCAGTT
TTTTTGGGTGGCGCTGAATGAAATTAGATCATAAAGAGAGGGTGGATGGT
CAGGGGGTTATGGGGATGGGGGGTATTACTACGTAGCAAGGAGAAGGAGG
AGAGGGCGTGCCTAGGTAGGACATGAAAGGCCGAAATGAGAAATAAACAT
TTCACAAGCGCTGAAATGAGATGGAGGTGAA
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protein sequence of NO17G00170.3

>NO17G00170.3-protein ID=NO17G00170.3-protein|Name=NO17G00170.3|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MCRTIVVFGRAAGGRQGPCGGLIGSALRFVPSLAFITIILPLLRNYQQPA
HSNHTTQAQVQKLGGWVARQVRPSTPRRHVSHKSRPHLVGCLHHRLTKVS
LPPSLFPPRAGTMTRTVPRNRLARTIAGGAYGGGKRRMWKIPGVGCTRSD
DRENNFQAFLYSLVGHGGCINDARFFIVSSLLPFKRQPESLLSPGIDPHG
NGHFASPYGAAAYGGGGAGGVLGRQRSSGGGGAGAGAGAGAGGMYHSSPP
RASFREPSYGVGAGNPPDLAAGGSPHYYQQHQHQQQFQYQQGGYMHSPPS
PGYPYQAGPMAPPSPSRGLVRSRHGVVDQSFSRGLTSRKTRQQQQQQQQQ
QLQPLMLPAGGEEIGIDGGMDGLAPHSPHRGFSSSSDHAASAAAAATAGG
LGGGFYDDGPPPTSSLMDLDEHDANRNSRLSSQQPQQQQLASVREPDHDA
SRWGATAGQAAWASWVLVFGFPRELREAVMNQFALFGSLQETVAEGNWLL
LKCVCNR*
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protein sequence of NO17G00170.2

>NO17G00170.2-protein ID=NO17G00170.2-protein|Name=NO17G00170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MCRTIVVFGRAAGGRQGPCGGLIGSALRFVPSLAFITIILPLLRNYQQPA
HSNHTTQAQVQKLGGWVARQVRPSTPRRHVSHKSRPHLVGCLHHRLTKVS
LPPSLFPPRAGTMTRTVPRNRLARTIAGGAYGGGKRRMWKIPGVGCTRSD
DRENNFQAFLYSLVGHGGCINDARFFIVSSLLPFKRQPESLLSPGIDPHG
NGHFASPYGAAAYGGGGAGGVLGRQRSSGGGGAGAGAGAGAGGMYHSSPP
RASFREPSYGVGAGNPPDLAAGGSPHYYQQHQHQQQFQYQQGGYMHSPPS
PGYPYQAGPMAPPSPSRGLVRSRHGVVDQSFSRGLTSRKTRQQQQQQQQQ
QLQPLMLPAGGEEIGIDGGMDGLAPHSPHRGFSSSSDHAASAAAAATAGG
LGGGFYDDGPPPTSSLMDLDEHDANRNSRLSSQQPQQQQLASVREPDHDA
SRWGATAGQAAWASWVLVFGFPRELREAVMNQFALFGSLQETVAEGNWLL
LKYSTRAQAEKAVAQNGTLLHTEAPQGSRSSSNSSSSGLLLAVQRVTPDV
IRRLGVAIGPLGGVEVVRRADRGNASVLSPHKHQPQENLLRQRRGSLGRG
GRQGGRGVMSPEGFAINDSDLLKTPVVERPWWFLLWVAICSFFGWR*
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protein sequence of NO17G00170.1

>NO17G00170.1-protein ID=NO17G00170.1-protein|Name=NO17G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MYHSSPPRASFREPSYGVGAGNPPDLAAGGSPHYYQQHQHQQQFQYQQGG
YMHSPPSPGYPYQAGPMAPPSPSRGLVRSRHGVVDQSFSRGLTSRKTRQQ
QQQQQQQQLQPLMLPAGGEEIGIDGGMDGLAPHSPHRGFSSSSDHAASAA
AAATAGGLGGGFYDDGPPPTSSLMDLDEHDANRNSRLSSQQPQQQQLASV
REPDHDASRWGATAGQAAWASWVLVFGFPRELREAVMNQFALFGSLQETV
AEGNWLLLKYSTRAQAEKAVAQNGTLLHTEAPQGSRSSSNSSSSGLLLAV
QRVTPDVIRRLGVAIGPLGGVEVVRRADRGNASVLSPHKHQPQENLLRQR
RGSLGRGGRQGGRGVMSPEGFAINDSDLLKTPVVERPWWFLLWVAICSFF
GWR*
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Synonyms
Publications