NO17G00150, NO17G00150 (gene) Nannochloropsis oceanica

Overview
NameNO17G00150
Unique NameNO17G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2898
Alignment locationchr17:50744..53641 +

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Properties
Property NameValue
DescriptionProtein CLP1 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:50744..53641 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0031124mRNA 3'-end processing
GO:0031124mRNA 3'-end processing
GO:0006397mRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR010655Clp1_C
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
Homology
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: CBN77731.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.4 bits (233), Expect = 3.700e-16
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 0 
Query:   20 SLAPAALELAFDDITILRIGDSGISSSIAPLG-VDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPDLVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            +L+PAAL L F+D++I R+G   +S ++ P+G  D+   PL +    P + LLH +LAV H                                     +L+ SNAAGFV+VT VD++++++  L+PCPG+LPSR+L+ G+V W E
Sbjct:  326 ALSPAALHLDFNDVSIFRVGGQTVSDAMLPVGHSDSSLGPLQVNPFYPSSDLLHTVLAVCH----------PVLRQDGTMLGGASGLEGDRDSAEAAQELLNSNAAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWQE 460
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: EEC72750.1 (hypothetical protein OsI_06380 [Oryza sativa Indica Group])

HSP 1 Score: 94.0 bits (232), Expect = 4.800e-16
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDSGISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYG A        LAP +  + F D+++ +IG      S  P+G +   DP  L  V     ++H +LAV +A                                  +PD +V SN AGF+HVT VD++RKK+ ++APCPG LPS+ L+  S+ W E
Sbjct:  311 RIKEYFYGIA------NDLAPHSNVVNFSDVSVYKIGTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAK---------------------------------EPDEIVSSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSKLLIASSLTWYE 433
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: EEE56563.1 (hypothetical protein OsJ_05899 [Oryza sativa Japonica Group])

HSP 1 Score: 94.0 bits (232), Expect = 4.800e-16
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDSGISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYG A        LAP +  + F D+++ +IG      S  P+G +   DP  L  V     ++H +LAV +A                                  +PD +V SN AGF+HVT VD++RKK+ ++APCPG LPS+ L+  S+ W E
Sbjct:  302 RIKEYFYGIA------NDLAPHSNVVNFSDVSVYKIGTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAK---------------------------------EPDEIVSSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSKLLIASSLTWYE 424
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: XP_010909089.1 (PREDICTED: protein CLP1 homolog [Elaeis guineensis])

HSP 1 Score: 94.0 bits (232), Expect = 4.800e-16
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDS-GISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYG A        L+P +  + F DI++ RIG       S  P+G +   DP  L  V     LLH +LAV +A                                  +PD ++ SN AGFV+VT +D++RKK+ +LAPCPG LPS++L+VG++ W+E
Sbjct:  308 RIREYFYGLA------NDLSPHSNIVNFSDISVYRIGGGPQAPRSALPIGAEPVADPTRLVAVNISRDLLHLVLAVSYAK---------------------------------EPDQIISSNVAGFVYVTDIDIQRKKITYLAPCPGELPSKFLIVGTLTWLE 431
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: XP_015626268.1 (PREDICTED: protein CLP1 homolog [Oryza sativa Japonica Group] >BAD17173.1 putative ATP/GTP-binding protein [Oryza sativa Japonica Group] >BAF08213.1 Os02g0217500 [Oryza sativa Japonica Group] >BAS77664.1 Os02g0217500 [Oryza sativa Japonica Group])

HSP 1 Score: 94.0 bits (232), Expect = 4.800e-16
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDSGISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYG A        LAP +  + F D+++ +IG      S  P+G +   DP  L  V     ++H +LAV +A                                  +PD +V SN AGF+HVT VD++RKK+ ++APCPG LPS+ L+  S+ W E
Sbjct:  309 RIKEYFYGIA------NDLAPHSNVVNFSDVSVYKIGTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAK---------------------------------EPDEIVSSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSKLLIASSLTWYE 431
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: XP_006647074.2 (PREDICTED: protein CLP1 homolog, partial [Oryza brachyantha])

HSP 1 Score: 93.6 bits (231), Expect = 6.300e-16
Identity = 53/162 (32.72%), Postives = 78/162 (48.15%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDSGISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYG A        LAP +  + F D+++ +IG      S  P+G +   DP  L  V     ++H +LAV +A                                  +PD ++ SN AGF+HVT VD++RKK+ ++APCPG LPS+ L+  S+ W E
Sbjct:  273 RIKEYFYGIA------NDLAPHSNVVNFSDVSVYKIGSHQAPKSALPIGAEPVADPTRLIAVNISTDMVHTVLAVSYAK---------------------------------EPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSKLLIASSLTWYE 395
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: XP_016465820.1 (PREDICTED: protein CLP1 homolog [Nicotiana tabacum])

HSP 1 Score: 93.6 bits (231), Expect = 6.300e-16
Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDS-GISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYGP+        L+P +  + F D+ I RIG       S  P+G +   DP  L  V  +  LLH +LAV +A                                  +PD ++ SN AGF++VT VD+ RKK+ +LAPC G LPS+YL+VG++ W+E
Sbjct:  315 RIREYFYGPS------NDLSPHSNVVNFGDLFIYRIGGGPQAPRSALPIGAEPAADPTRLVPVSINRDLLHLVLAVSYAD---------------------------------EPDQIISSNVAGFIYVTDVDMHRKKITYLAPCAGELPSKYLIVGTLTWIE 438
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: BAK00874.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 93.2 bits (230), Expect = 8.200e-16
Identity = 55/164 (33.54%), Postives = 79/164 (48.17%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDS-GISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVEE 165
            RI +YFYG A        LAP +  + F D+++ RIG       S  P+G +   DP  L  V     ++H +LAV +A                                  +PD ++ SN AGF+HVT VD++RKK+ ++APCPG LPSR L+  S+ W E+
Sbjct:  313 RIKEYFYGIA------NDLAPHSNVVNFSDVSVFRIGSGHQAPRSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAK---------------------------------EPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSRLLIASSLTWYEQ 437
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: XP_008793274.1 (PREDICTED: protein CLP1 homolog [Phoenix dactylifera])

HSP 1 Score: 93.2 bits (230), Expect = 8.200e-16
Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDS-GISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYG A        ++P +  + F DI++ RIG       S  P+G +   DP  L  V     LLH +LAV +A                                  +PD ++ SN AGFV+VT +D++RKK+ +LAPCPG LPS++L+VG++ W+E
Sbjct:  308 RIREYFYGLA------NDMSPHSNIVNFSDISVYRIGGGPQAPRSALPIGAEPVADPTRLVAVNISRDLLHLVLAVSYAK---------------------------------EPDQIISSNVAGFVYVTDIDIQRKKITYLAPCPGELPSKFLIVGTLTWLE 431
[Close]
BLAST of NO17G00150 vs. NCBI_GenBank
Match: XP_009630103.1 (PREDICTED: protein CLP1 homolog [Nicotiana tomentosiformis])

HSP 1 Score: 93.2 bits (230), Expect = 8.200e-16
Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 0 
Query:    3 RIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDS-GISSSIAPLGVDTRPDPLALQVVEPHAGLLHAILAVLHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-LVFSNAAGFVHVTGVDVERKKMRFLAPCPGALPSRYLVVGSVVWVE 164
            RI +YFYGP+        L+P +  + F D+ I RIG       S  P+G +   DP  L  V  +  LLH +LAV +A                                  +PD ++ SN AGF++VT VD+ RKK+ +LAPC G LPS+YL+VG++ W+E
Sbjct:  315 RIREYFYGPS------NDLSPHSNVVNFGDLFIYRIGGGPQAPRSALPIGAEPAADPTRLVPVSINRDLLHLVLAVSYAN---------------------------------EPDQIISSNVAGFIYVTDVDMHRKKITYLAPCAGELPSKYLIVGTLTWIE 438
The following BLAST results are available for this feature:
BLAST of NO17G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN77731.13.700e-1635.17conserved unknown protein [Ectocarpus siliculosus][more]
EEC72750.14.800e-1633.33hypothetical protein OsI_06380 [Oryza sativa Indic... [more]
EEE56563.14.800e-1633.33hypothetical protein OsJ_05899 [Oryza sativa Japon... [more]
XP_010909089.14.800e-1634.97PREDICTED: protein CLP1 homolog [Elaeis guineensis... [more]
XP_015626268.14.800e-1633.33PREDICTED: protein CLP1 homolog [Oryza sativa Japo... [more]
XP_006647074.26.300e-1632.72PREDICTED: protein CLP1 homolog, partial [Oryza br... [more]
XP_016465820.16.300e-1634.97PREDICTED: protein CLP1 homolog [Nicotiana tabacum... [more]
BAK00874.18.200e-1633.54predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_008793274.18.200e-1634.36PREDICTED: protein CLP1 homolog [Phoenix dactylife... [more]
XP_009630103.18.200e-1634.97PREDICTED: protein CLP1 homolog [Nicotiana tomento... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00150.1NO17G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00150.1NO17G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00150 ID=NO17G00150|Name=NO17G00150|organism=Nannochloropsis oceanica|type=gene|length=2898bp
TCCCTCCCTCCCTCCCTCCCTCCCACCAATCGAAGCGCCCTGAGCAACTT
GGGTGGAACCATGCGGTCTCACGTCTCACTCATATCTACCCCTCCTTTCT
TCCTCCCCCCCCCTCTGTCCCTCCCTCTTTCTCTCCTTTCCAGGCGCCTT
GAGCGGGAAGAGTGTGACGTTGGTGAAGCTGCCACGGTCGGGTGGGGTGG
TTCAGAGAGACACACGCTACCGGCGAGCGACCAGgtagggcgggagggag
ggagggagggagggcgggatggaaggcgggatggaccgtcgtgcccgtca
catgtgttgagcattccttcttctcgttgtttctcgtacacactctcgcc
ccgggtcacagGATGAAGCGCATCCACCAGTATTTCTACGGCCCCGCCAT
TGGTCCTGgttcgtgccctccctccctccctacgtcctttcctctggccc
tccctcctcactccttccttcctctcaaatgcaaccaaacagGCACTCCT
CCTTCACTGGCACCGGCGGCCCTGGAGCTCGCGTTTGACGACATTACAAT
ACTCAGGATCGGCGACAGgtagggagggtggaagagagggaggaaagaga
tgtcgagctgcgtcagccgccgaacaactgaccgccctccctcctttctt
ccccttcctgcttctctccctccctcccgtcccacttttcttacccagCG
GCATTTCCTCCTCCATCGCCCCCCTCGGTGTCGACACCAGGCCTGACCCG
CTGGCGCTCCAGGTGGTGGAGCCGCATGCGgtaagcgaggagggagggag
ggaagaagggaaggagggataggcaacgagaggatgtgcgatcacgtctt
ttgttttctttcctttgttttctctctccccactcattctttgccctccc
ctctacctccctccatccctccttcccgacagGGCCTCCTTCACGCCATC
CTCGCTGTCCTCCACGCCCCTTCTTCCTCCTCTTCCTCTCTTTCCACCCT
TCGTCGTCAAGCAAACAAAGAGAGGGCAGACGAGGACGAGGACGAGGACG
AGGACGAGGATGAAGCGGTGGACCCCGATCTTGTGTTCAGCAACGCCGCC
GGCTTTGTTCACGTCACAGgtaggaagggttgcagagtgagatggatgga
aggagaaggggaaggcgaagagtgacgtgaagtccaagtgggtctgtcct
gtggctaatgtggacttcttgtgcatgtacagaatatggaggataggatg
gacggaatacacgccgtcagtcattggacatgctaaactaggcgggttga
cccgacaagccctcacccctccaaccttctcttcctctatcaactcttct
ctcccatttccccctgtctatctatcacacgctcagGTGTAGATGTAGAG
CGGAAAAAAATGCGATTTCTGGCGCCGTGTCCAGGGGCATTGCCCAGTCG
GTATTTGGTGGTAGGGAGTGTGGTGTGGGTGGAGGAAGGGACGTAGAGGG
GGGAGAGGGGGGCCGAGCAAGGAGAGTAGAGAGATCTCTGTGAAGCAAAG
CAAATAAATCAGTCCAACGTTGAAGGAGACCGACGTGGTGATAGAGTAGA
GTGTTGTTGGTTCCTTTCGGTTCCTTTCATGCCTGACTCACGAGTGGCAG
CAGCACGTCATCGATGCGCCCGCCTTCGATTGTATCTACGGGCGACTTGC
CAAGATGTAATGTCCCAAAGAGAAAGCCGCGTTGCAATGTAAGTAGAATC
AAGAAGAGGGGGTGATCATCCCCTTGGTCAAGCCTTTGCCAAGCGGGAGG
CGCAGAATTAATTGGATAGGACCAGTGGCCTGGGGTCTGGTGAAGTGTTG
GCCGTATTCTCGGCGGAAAGTTGTCGCGCCCATGAGGACGCCTCATCTCT
TCTCTCTCTCGTGACTCGACTAGTATAAAAGATATATTTCCCTCTATACT
CTTCACTCATTTGAGAGGGAAACCAACCTGTCAAAGTCTTCCCACAAAAA
CATATACATAAATAATATAATATAACAAAATAAAAAGGAAAGATATAGAA
ATAGGGGAAGAGGAGAGATTCCTACGCCCGAGTCTTGAGGCCGAGTTGTG
ATTTGCTACCATTCCCATCATGTGCTGGCTCTACTCAGTTGTCTTCACGG
GACTCGGCGGCACTGTACACTTCTTGCGAACCAGCAGGGCTCTTTCGTAT
GATCGCCAGCAGCAATGTGACAGACGAGAATTGATTGGAAGGGACAAGGA
GGCCACTTCCACATTTCATTCGCACGTGAAAAACGATGGACGCACCATAT
TTTCTGGCTTCTATGTACAATACTACCGGGAGGAAACAGACCAACATTAT
TGCTCTGTCAGATGGGAAAGGACAGAGTATTGCTGGGGTGCGGGCTTTGG
AAAAGATGAGAAGGATGTGAAGGAACGAAATGAGAGAGCGAGAGATGAAG
CGCCCTCACGTATACCTGACAACTAATTGAGCGGAACCACTCTAAGATGA
TGCCAAGGCCGTCGTAGCAATAGGCGGAGACACTTACGCCAATGTGCGTA
CACGTAGGCCCTTCCAGTGGTTGAAAGGCCGAGAGCCCGAACGGCTCCCT
ACTCAAGGCAGTCTGTGACCGGAACCACCGAATGGCGATGGTGGGATCCT
TCAATCAGCACTTATACACCCGTAAGAACACATGGATCAACAGCAATTTT
CGAAAGCGAAAGCAAACAGATTGAAGGAGTGAAGAAAGGGCAATGCCTGG
ATCATTTACTCGTTCATCACAGGTTCAATAATGCCGGTATAAATGTGGAA
ATCACTCAATATCGCTTGAATCCCCTTCTTGATCCTCTCCCTCCAGGATC
AGCACCATCACCGCCAAATCCCCTTCCATTTCCACTCTCCCCTCCAAG
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protein sequence of NO17G00150.1

>NO17G00150.1-protein ID=NO17G00150.1-protein|Name=NO17G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MKRIHQYFYGPAIGPGTPPSLAPAALELAFDDITILRIGDSGISSSIAPL
GVDTRPDPLALQVVEPHAGLLHAILAVLHAPSSSSSSLSTLRRQANKERA
DEDEDEDEDEDEAVDPDLVFSNAAGFVHVTGVDVERKKMRFLAPCPGALP
SRYLVVGSVVWVEEGT*
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Synonyms
Publications