NO17G00120, NO17G00120 (gene) Nannochloropsis oceanica

Overview
NameNO17G00120
Unique NameNO17G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length685
Alignment locationchr17:41206..41890 -

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Properties
Property NameValue
Description40S ribosomal protein S27
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:41206..41890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005488binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000592Ribosomal_S27e
Homology
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: XP_008870490.1 (40S ribosomal protein S27-like protein [Aphanomyces invadans] >ETW00355.1 40S ribosomal protein S27-like protein [Aphanomyces invadans])

HSP 1 Score: 150.6 bits (379), Expect = 2.200e-33
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            MP DLLHPSA +E+ KHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LTEGCSFRKK +
Sbjct:    1 MPRDLLHPSATEERSKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTEGCSFRKKTD 82
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: CBJ26210.1 (Ribosomal protein S27 [Ectocarpus siliculosus])

HSP 1 Score: 150.2 bits (378), Expect = 2.800e-33
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKK 81
            MPADLLHP+++ E+R HKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVV+C  C+T+LC PTGGKA+LTEGCSFRKK
Sbjct:    1 MPADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVVCGSCSTILCQPTGGKARLTEGCSFRKK 80
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: XP_024584088.1 (40s ribosomal protein s27-like [Plasmopara halstedii] >CEG47719.1 40s ribosomal protein s27-like [Plasmopara halstedii])

HSP 1 Score: 148.7 bits (374), Expect = 8.300e-33
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPEN 84
            MP DLLHPSAA+E  KHKL+RLVQSPNS+FMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LT+GC +RKK EN
Sbjct:    1 MPRDLLHPSAAEEASKHKLRRLVQSPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTDGCQYRKKTEN 83
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: XP_009842102.1 (40S ribosomal protein S27-like protein [Aphanomyces astaci] >ETV68476.1 40S ribosomal protein S27-like protein [Aphanomyces astaci])

HSP 1 Score: 148.3 bits (373), Expect = 1.100e-32
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            MP DLLHP+A +E+ KHKLKRLVQ+PNSFFMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LTEGCSFRKK +
Sbjct:    1 MPRDLLHPTATEERSKHKLKRLVQAPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTEGCSFRKKTD 82
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: XP_008619499.1 (40S ribosomal protein [Saprolegnia diclina VS20] >XP_012206426.1 40S ribosomal protein [Saprolegnia parasitica CBS 223.65] >EQC27105.1 40S ribosomal protein [Saprolegnia diclina VS20] >KDO22869.1 40S ribosomal protein [Saprolegnia parasitica CBS 223.65] >OQR96576.1 40S ribosomal protein S27-like protein [Achlya hypogyna])

HSP 1 Score: 147.9 bits (372), Expect = 1.400e-32
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            M  DLLHPSA++E+ KHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LTEGCSFRKK +
Sbjct:    1 MARDLLHPSASEERSKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTEGCSFRKKTD 82
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: XP_018915631.1 (PREDICTED: 40S ribosomal protein S27-like [Bemisia tabaci])

HSP 1 Score: 147.5 bits (371), Expect = 1.800e-32
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKP 82
            +  DLLHPS ADE+RKHKLKRLVQ PNS+FMDVKCPGC+ ITTVFSHAQTVV+C+GC+ +LC PTGGKA+LTEGCSFR+KP
Sbjct:    3 LATDLLHPSLADEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQTVVICTGCSAILCQPTGGKARLTEGCSFRRKP 83
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: GAX96234.1 (40S ribosomal protein S27-like protein [Pythium insidiosum])

HSP 1 Score: 147.1 bits (370), Expect = 2.400e-32
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            MP DLLHPSA++E +KHKLKRLVQSPNS+FMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LT+GC +RKK E
Sbjct:    1 MPRDLLHPSASEEAQKHKLKRLVQSPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTDGCQYRKKTE 82
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: GBG30541.1 (40S ribosomal protein S27 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 147.1 bits (370), Expect = 2.400e-32
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            M  DLLHPSAA+E+RKHKLKRLVQSPNSFFMDVKCPGCF ITT+FSHAQT V+C+ C+ VLC PTGGKA+LTEGCSFRKK E
Sbjct:    1 MNQDLLHPSAAEEKRKHKLKRLVQSPNSFFMDVKCPGCFKITTIFSHAQTRVICAACSVVLCQPTGGKARLTEGCSFRKKVE 82
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: OQR88666.1 (40S ribosomal protein S27 [Thraustotheca clavata])

HSP 1 Score: 146.7 bits (369), Expect = 3.100e-32
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            M  DLLHPSA++E+ KHKLKRLVQ+PNSFFMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LTEGCSFRKK +
Sbjct:    1 MARDLLHPSASEERSKHKLKRLVQTPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTEGCSFRKKTD 82
[Close]
BLAST of NO17G00120 vs. NCBI_GenBank
Match: POM68924.1 (40S ribosomal protein S27-like [Phytophthora palmivora var. palmivora])

HSP 1 Score: 146.7 bits (369), Expect = 3.100e-32
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0 
Query:    1 MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPE 83
            MP DLLHPSAADE  KHKL+RLVQ+PNS+FMDVKCPGCFNITTVFSHAQTVVLC  C+ +LC PTGGKA+LT+GC +RKK E
Sbjct:    1 MPRDLLHPSAADEASKHKLRRLVQAPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTDGCQYRKKTE 82
The following BLAST results are available for this feature:
BLAST of NO17G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008870490.12.200e-3382.9340S ribosomal protein S27-like protein [Aphanomyce... [more]
CBJ26210.12.800e-3383.75Ribosomal protein S27 [Ectocarpus siliculosus][more]
XP_024584088.18.300e-3379.5240s ribosomal protein s27-like [Plasmopara halsted... [more]
XP_009842102.11.100e-3280.4940S ribosomal protein S27-like protein [Aphanomyce... [more]
XP_008619499.11.400e-3281.7140S ribosomal protein [Saprolegnia diclina VS20] >... [more]
XP_018915631.11.800e-3279.01PREDICTED: 40S ribosomal protein S27-like [Bemisia... [more]
GAX96234.12.400e-3279.2740S ribosomal protein S27-like protein [Pythium in... [more]
GBG30541.12.400e-3281.7140S ribosomal protein S27 [Aurantiochytrium sp. FC... [more]
OQR88666.13.100e-3280.4940S ribosomal protein S27 [Thraustotheca clavata][more]
POM68924.13.100e-3279.2740S ribosomal protein S27-like [Phytophthora palmi... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00120.1NO17G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00120.1NO17G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00120 ID=NO17G00120|Name=NO17G00120|organism=Nannochloropsis oceanica|type=gene|length=685bp
ATGCCTGCCGACCTCTTGCACCCTTCCGCCGCGGACGAGCAACGCAAGCA
CAAGCTGAAGCGATTGGTTCAGAGCCCGAACTCCTTCTTCATGGACGTGA
AATGCCCCGGATGCTTTAACATCACAACCGTCTTCTCCCACGCCCAGgta
cgtcttcgtcgatgtctttcgtcgagctgcttgatggatatgtgtgtggt
agtgtgaaaaagtggcatcgtgctgacagcagagcgagatcgtggggagg
ggggaggaaacaatgaagtccagtgcagcgagtggaaaatagccgcggag
gagccatgatgatgtatctgctacctctgccagcgaaatacccagacaat
tggaactttaaacgggtcgaggagttttgcggcgcaggaggatggataca
tggaggacggaaggaaagcagacggcagggtgtgaggaagagtgtgggag
tggtgtcgcaataggtcgacacacgatagctctttgatatttctcttact
gcatgctgtaaggtcctccatacgtacacatagcttatcgcctcattcac
ttcctctccttctacccctccccttcacagACTGTCGTCCTGTGCAGCGG
ATGCAACACGGTTTTGTGCACGCCCACTGGGGGCAAGGCCAAGCTGACCG
AAGGCTGCTCGTTCCGCAAGAAGCCCGAGAACTAG
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protein sequence of NO17G00120.1

>NO17G00120.1-protein ID=NO17G00120.1-protein|Name=NO17G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MPADLLHPSAADEQRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQT
VVLCSGCNTVLCTPTGGKAKLTEGCSFRKKPEN*
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Synonyms
Publications