NO17G00050, NO17G00050 (gene) Nannochloropsis oceanica

Overview
NameNO17G00050
Unique NameNO17G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1771
Alignment locationchr17:15420..17190 +

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Properties
Property NameValue
DescriptionGolgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:15420..17190 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_008305022.1 (PREDICTED: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [Stegastes partitus])

HSP 1 Score: 72.8 bits (177), Expect = 3.800e-9
Identity = 53/139 (38.13%), Postives = 71/139 (51.08%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERFTFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEP 457
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW   +    F P LREELF   V ++ G        VP E ++P
Sbjct: 1627 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSKTGYSDLWEITWERIV---CFLPNLREELFKQTVIQDPGPN------VPAEPVQP 1743          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_008305023.1 (PREDICTED: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X2 [Stegastes partitus])

HSP 1 Score: 72.8 bits (177), Expect = 3.800e-9
Identity = 53/139 (38.13%), Postives = 71/139 (51.08%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERFTFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEP 457
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW   +    F P LREELF   V ++ G        VP E ++P
Sbjct: 1623 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSKTGYSDLWEITWERIV---CFLPNLREELFKQTVIQDPGPN------VPAEPVQP 1739          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_017318956.1 (PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [Ictalurus punctatus] >XP_017318957.1 PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [Ictalurus punctatus])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 56/144 (38.89%), Postives = 71/144 (49.31%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTPTA 461
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E           P   +EP PT+
Sbjct: 1609 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPHLREELFKQAVMPEP---------APNVPVEPAPTS 1726          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_017318958.1 (PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X2 [Ictalurus punctatus])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 56/144 (38.89%), Postives = 71/144 (49.31%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTPTA 461
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E           P   +EP PT+
Sbjct: 1605 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPHLREELFKQAVMPEP---------APNVPVEPAPTS 1722          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: PIK45929.1 (putative golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X2 [Apostichopus japonicus])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFE-EGEETIGRELWDLTWAVAIERF-TFCPGLREELF 432
            A S+LC  FL HL PLLSL +F  LW+ +LD    +++           +   EL  L E   E LKN+LLVM  AG FE +GE+    +LW +TW    ER   F PGL+ E+F
Sbjct:   95 AASLLCKGFLQHLTPLLSLSTFTALWMTILDFMDKYMN-----------ADKSEL--LSEAIPESLKNMLLVMHTAGVFETDGEDDPAAQLWAMTW----ERIDCFLPGLKTEVF 192          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_022540542.1 (Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X2 [Astyanax mexicanus])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 56/143 (39.16%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTPT 460
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E          VP   +EP P+
Sbjct: 1641 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPRLREELFKQAVMPEP---------VPNVPVEPAPS 1757          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_007240413.2 (Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X3 [Astyanax mexicanus])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 56/143 (39.16%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTPT 460
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E          VP   +EP P+
Sbjct: 1630 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPRLREELFKQAVMPEP---------VPNVPVEPAPS 1746          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_007240415.2 (Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X4 [Astyanax mexicanus])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 56/143 (39.16%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTPT 460
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E          VP   +EP P+
Sbjct: 1618 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPRLREELFKQAVMPEP---------VPNVPVEPAPS 1734          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_022540541.1 (Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [Astyanax mexicanus])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 56/143 (39.16%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTPT 460
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E          VP   +EP P+
Sbjct: 1645 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPRLREELFKQAVMPEP---------VPNVPVEPAPS 1761          
BLAST of NO17G00050 vs. NCBI_GenBank
Match: XP_017580198.1 (PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [Pygocentrus nattereri])

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-8
Identity = 56/142 (39.44%), Postives = 70/142 (49.30%), Query Frame = 0
Query:  319 ALSMLCSTFLSHLRPLLSLPSFHELWLQLLDVFGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEGEETIG-RELWDLTWAVAIERF-TFCPGLREELFGGVVEEEQGGRVVEGVVVPQEELEPTP 459
            A ++L   FL HL PLLSLP+F  LWL +LD    ++     +S  L     LE +P      E LKN+LLVM  AG F   +   G  +LW++TW    ER   F P LREELF   V  E          VP   +EP P
Sbjct: 1657 ACTLLSKVFLQHLSPLLSLPTFAALWLTILDFMDKYMHAG--SSDLL-----LEAIP------ESLKNMLLVMDTAGIFHSADSRTGYSDLWEITW----ERIDCFLPRLREELFKQAVIPEP---------VPSVSVEPAP 1772          
The following BLAST results are available for this feature:
BLAST of NO17G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008305022.13.800e-938.13PREDICTED: golgi-specific brefeldin A-resistance g... [more]
XP_008305023.13.800e-938.13PREDICTED: golgi-specific brefeldin A-resistance g... [more]
XP_017318956.11.100e-838.89PREDICTED: Golgi-specific brefeldin A-resistance g... [more]
XP_017318958.11.100e-838.89PREDICTED: Golgi-specific brefeldin A-resistance g... [more]
PIK45929.11.100e-841.74putative golgi-specific brefeldin A-resistance gua... [more]
XP_022540542.11.400e-839.16Golgi-specific brefeldin A-resistance guanine nucl... [more]
XP_007240413.21.400e-839.16Golgi-specific brefeldin A-resistance guanine nucl... [more]
XP_007240415.21.400e-839.16Golgi-specific brefeldin A-resistance guanine nucl... [more]
XP_022540541.11.400e-839.16Golgi-specific brefeldin A-resistance guanine nucl... [more]
XP_017580198.11.900e-839.44PREDICTED: Golgi-specific brefeldin A-resistance g... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00050.1NO17G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00050.1NO17G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00050 ID=NO17G00050|Name=NO17G00050|organism=Nannochloropsis oceanica|type=gene|length=1771bp
ATGGCCCATGCCCTCACCTGGCTTCTCCCTCCCTCCCTCCCTCCTCCCTC
CTCCTCGACCGCCCGTCTCTTCGCCCCTCTCCTGGCCGGGGGGCTCTCGC
GCTTGGTGGCTGTGAATCTACCTTCCCTCCCTTCCTCGCTCTCCCTCCAG
GGGTGGGCGGACCTCTTTCTCTGCATTCAGTTCTGCGCCCCGCTGGGAGG
GGAGGCCACGGGAAGGGCCTTCGAGGCGTTATGCTTCCTACTGCATGAGC
CACAACTCAAGgtacacacttcctcccatctttccttccgttctcctgtt
tctcctctcctcattcttctcgttatgaaatcatctcacgtccttctctc
cctccctctttccctcctagGGCTGCGTTCCCGTGACCTGCACCCAAACC
ATCCTCTCTTTCGTCCTCCCGCCCCTCGAGGAAGAGAAGGGGAGAGAAGG
CAGTTTGCTGCAGGGAAGCAATGACTCGCTGGCCCGCGCCGCCTTGGACC
TGCTGATGGTGCTGCACGCGCACCTGGACGTGATGGTGGCCGGGAAGGGC
GAGGGCGAGGGCGGGAGGGGGGAAGGGGCACAAAGGCAGGAGGGGGTCGT
GAACTGGATGACGATACTGGACGCGCTGGCCAAGGCGGCGGAGGACAGGC
GCTTGTCGGTGAGGGGCCACGCCATCCTCCTCCTGACCGAAGCCCTGCTC
GACCGGCAGAGCCAGCAGGTGGGTGCGGCCAGTTTGGCACGGTTGCTGCT
GGACGTGCTCTTCCCCCTCGTCCGCCTCATCCATGCCACCCCTGCCGCGG
AGACCTTGCCGACGTACCCGCCGCCCATTCTCGCTGACGCTGCTGGTAAA
GGAGACAGAAGTGGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAA
CAGCAGCAGCACTGGTACCCCTCCACGCCGAGTTGGTGATCGAGGCGGCC
TTCCGGGACCTTCCGCGTCTTCTTCTCCCGCGCAACAGAAACACGAGCAA
GAGCAGCAGCAACAGCAACAACACCTCCCACCTCCAGCCACGGCGCTCAA
GGTGAAAGAGCTGGCCCTGTCCATGCTCTGCTCCACGTTCCTCTCCCATC
TCCGGCCCCTCCTCTCTCTCCCCTCCTTCCACGAGCTCTGGCTGCAGCTT
CTAGACGTCTTCGGCCCCTTCCTCTCCCTTCCCGTACTCACTTCCCCCAC
CCTCCCACCCTCTCCCTACCTCGAGCTGCTTCCGCTGCAAGAACACGCGT
TGGAGAAGCTCAAGAACCTGCTGCTGGTCATGTCGGCAGCTGGCGCATTC
GAGGAGGGCGAGGAGACCATTGGCCGAGAGCTCTGGGACTTGACATGGGC
CGTAGCGATCGAGCGGTTCACCTTCTGTCCAGGGCTGAGGGAGGAATTGT
TCGGAGGGGTGGTAGAGGAGGAGCAGGGAGGGAGGGTAGTCGAGGGGGTG
GTGGTGCCGCAGGAGGAGCTGGAGCCCACGCCGACAGCGGTGGAGGAAGG
TGGAAAGGTGGTGGGAGGAGAGTCGAGGGCAGGAGAAGGAGACGGAGAGA
TGAAAGAAGCGAAGGACGTCGCCGCCTTGTATCCGACGCCGGGGGATGTG
GTTGGTAAAGACGCCGCTCTGTTTGTGCAGGAGGCTCCTCAGCACCACGA
GCACCACGAGCAGCAGCAGCAGCAGCAGCAACACCAGTGGCAACAGGAGG
AAGGGGGACCTCCTCGCCCAATCCCAGAGGGGACGATGTCGGCGACCCGG
AGCAGGGCCATGCTTGTCTAG
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protein sequence of NO17G00050.1

>NO17G00050.1-protein ID=NO17G00050.1-protein|Name=NO17G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MAHALTWLLPPSLPPPSSSTARLFAPLLAGGLSRLVAVNLPSLPSSLSLQ
GWADLFLCIQFCAPLGGEATGRAFEALCFLLHEPQLKGCVPVTCTQTILS
FVLPPLEEEKGREGSLLQGSNDSLARAALDLLMVLHAHLDVMVAGKGEGE
GGRGEGAQRQEGVVNWMTILDALAKAAEDRRLSVRGHAILLLTEALLDRQ
SQQVGAASLARLLLDVLFPLVRLIHATPAAETLPTYPPPILADAAGKGDR
SGSSSSNSSSSNSNSSSTGTPPRRVGDRGGLPGPSASSSPAQQKHEQEQQ
QQQQHLPPPATALKVKELALSMLCSTFLSHLRPLLSLPSFHELWLQLLDV
FGPFLSLPVLTSPTLPPSPYLELLPLQEHALEKLKNLLLVMSAAGAFEEG
EETIGRELWDLTWAVAIERFTFCPGLREELFGGVVEEEQGGRVVEGVVVP
QEELEPTPTAVEEGGKVVGGESRAGEGDGEMKEAKDVAALYPTPGDVVGK
DAALFVQEAPQHHEHHEQQQQQQQHQWQQEEGGPPRPIPEGTMSATRSRA
MLV*
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Synonyms
Publications