NO16G03130, NO16G03130 (gene) Nannochloropsis oceanica

Overview
NameNO16G03130
Unique NameNO16G03130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr16:931306..932154 -

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Properties
Property NameValue
DescriptionEndoglucanase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:931306..932154 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0009056catabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0089286-hairpin_glycosidase-like
IPR001701Glyco_hydro_9
Homology
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: XP_013066286.1 (PREDICTED: endoglucanase A-like [Biomphalaria glabrata])

HSP 1 Score: 77.0 bits (188), Expect = 3.700e-11
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 0 
Query:   35 QSLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNIL 98
            ++LH    S  +L GAIVGGP  DDS+ D   D++ NEVALDY+AGFQGA+AG+  L A+NIL
Sbjct:  391 ENLHATTPSPQVLVGAIVGGPEADDSYADNREDYVLNEVALDYNAGFQGALAGIVHLQAKNIL 453
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: XP_013066285.1 (PREDICTED: endoglucanase A-like [Biomphalaria glabrata])

HSP 1 Score: 74.3 bits (181), Expect = 2.400e-10
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0 
Query:   36 SLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNIL 98
            + H    S  +L GAIVGGP  DDS+ DK  D++ NEVALDY+AGFQGA+AG+  L  +NIL
Sbjct:  392 NFHATTPSPQVLVGAIVGGPEVDDSYEDKRDDYVLNEVALDYNAGFQGALAGIVHLQDKNIL 453
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: BAH22180.1 (beta-1,4-endoglucanase [Metaphire hilgendorfi])

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-9
Identity = 30/50 (60.00%), Postives = 44/50 (88.00%), Query Frame = 0 
Query:   43 SFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLS 93
            ++ ILYGA+VGGP ++D+++D  +D+I+NEVA DY+AGFQGAVAGL+ L+
Sbjct:  399 NYQILYGALVGGPDQNDNYNDARSDYISNEVACDYNAGFQGAVAGLRALT 448
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: EWM25871.1 (endo-beta- -glucanase [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 5.900e-9
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:   43 SFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNIL 98
            S + LYGA+VGGP E D + D C D+   EV++DY+AGFQGAVAGLK LS   +L
Sbjct:  446 SANTLYGALVGGPDEKDMYLDDCRDYKHTEVSVDYNAGFQGAVAGLKHLSLMGLL 500
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: XP_013066281.1 (PREDICTED: endoglucanase A-like isoform X1 [Biomphalaria glabrata] >XP_013066282.1 PREDICTED: endoglucanase A-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 69.3 bits (168), Expect = 7.700e-9
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0 
Query:   28 PIDVQSLQSLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNIL 98
            P D  +  S  P   +  +L GA+VGGP E+D + DK  D++TNEVA DY+AGFQGA+A +  L ++N+L
Sbjct:  387 PCDWNNFNSAAP---NPQVLVGALVGGPDENDIYQDKRDDYVTNEVATDYNAGFQGALAAIIHLQSKNLL 453
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: CAB06786.1 (1,4-beta-glucanase, partial [Caldicellulosiruptor bescii DSM 6725])

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   25 HRRPIDVQSLQSLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNILGD 100
            H    D QS+ S H      H LYGA+VGGP  DDS+ D  ++++ NEVA DY+AGF GA+A + QL   N + D
Sbjct:  378 HSSWADSQSIPSYHR-----HTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGGNPIPD 447
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: WP_013429868.1 (endoglucanase [Caldicellulosiruptor kronotskyensis] >ADQ45727.1 Cellulase., Cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor kronotskyensis 2002])

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   25 HRRPIDVQSLQSLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNILGD 100
            H    D QS+ S H      H LYGA+VGGP  DDS+ D  ++++ NEVA DY+AGF GA+A + QL   N + D
Sbjct:  410 HSSWADSQSIPSYHR-----HTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGGNPIPD 479
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: 4DOD_A (Chain A, The Structure Of Cbescii Cela Gh9 Module >4DOE_A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module)

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   25 HRRPIDVQSLQSLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNILGD 100
            H    D QS+ S H      H LYGA+VGGP  DDS+ D  ++++ NEVA DY+AGF GA+A + QL   N + D
Sbjct:  401 HSSWADSQSIPSYHR-----HTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGGNPIPD 470
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: WP_015908250.1 (endoglucanase [Caldicellulosiruptor bescii] >ACM60955.1 glycoside hydrolase family 48 [Caldicellulosiruptor bescii DSM 6725] >SKC55185.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SKC57848.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SKC46820.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SLL38652.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SMR92788.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SMR90553.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SMR94896.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >SMR97986.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PBC91287.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PBD07085.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PFH14403.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PFH21414.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PFH24499.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PIF58930.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii] >PRX95132.1 cellulose 1,4-beta-cellobiosidase [Caldicellulosiruptor bescii])

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   25 HRRPIDVQSLQSLHPIFLSFHILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNILGD 100
            H    D QS+ S H      H LYGA+VGGP  DDS+ D  ++++ NEVA DY+AGF GA+A + QL   N + D
Sbjct:  410 HSSWADSQSIPSYHR-----HTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGGNPIPD 479
[Close]
BLAST of NO16G03130 vs. NCBI_GenBank
Match: XP_013066371.1 (PREDICTED: endoglucanase E-4-like [Biomphalaria glabrata] >XP_013066372.1 PREDICTED: endoglucanase E-4-like [Biomphalaria glabrata])

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0 
Query:   45 HILYGAIVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQN 96
            H+L GAIVGGP  +D+HHD  +D+I NEVA DY++GFQGA+A +  L   N
Sbjct:  522 HVLIGAIVGGPEYNDNHHDLRSDYILNEVATDYNSGFQGALAAIVHLQMTN 572
The following BLAST results are available for this feature:
BLAST of NO16G03130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013066286.13.700e-1157.14PREDICTED: endoglucanase A-like [Biomphalaria glab... [more]
XP_013066285.12.400e-1056.45PREDICTED: endoglucanase A-like [Biomphalaria glab... [more]
BAH22180.11.600e-960.00beta-1,4-endoglucanase [Metaphire hilgendorfi][more]
EWM25871.15.900e-958.18endo-beta- -glucanase [Nannochloropsis gaditana][more]
XP_013066281.17.700e-947.14PREDICTED: endoglucanase A-like isoform X1 [Biomph... [more]
CAB06786.11.000e-846.671,4-beta-glucanase, partial [Caldicellulosiruptor ... [more]
WP_013429868.11.000e-846.67endoglucanase [Caldicellulosiruptor kronotskyensis... [more]
4DOD_A1.000e-846.67Chain A, The Structure Of Cbescii Cela Gh9 Module ... [more]
WP_015908250.11.000e-846.67endoglucanase [Caldicellulosiruptor bescii] >ACM60... [more]
XP_013066371.11.700e-856.86PREDICTED: endoglucanase E-4-like [Biomphalaria gl... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR082ncniR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G03130.1NO16G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G03130.1NO16G03130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G03130 ID=NO16G03130|Name=NO16G03130|organism=Nannochloropsis oceanica|type=gene|length=849bp
ATGGCCGCGCTGATTCTTCATCCAGACTTGATTCCCTTCTTCCACTCGTT
TGACGACAAGCGTCAAAAATTTCATCGCCGCCCCgtaggtctccttcgga
gcctaaatctttgccgatggtagagcgtcttttgctgccacgatatcatc
ccttttctctctggccaacgtctccttattcttcctgttttgtgtagatg
ggtgggaaagaggggagagattaaaaggaggaaggacatcacacactgcg
gcctttcttgcccacaatatgacaaatagatgacgaaaggatgatgtact
ttcttagATTGACGTACAATCGCTGCAATCTCTCCACCCCATCTTTCTCT
CATTTCACATCTTGTACGGAGCCATCGTGGGCGGGCCCAGGGAAGACGAC
TCGCACCACGATAAATGCGCGGACTTCATCACgtaaggggataagggggg
atggggaagggaaggagagaaggaggagggaagggagggagggagggagg
ggttgtaatgtcacggacggagataaagggaggatgcgagggagggagga
gggagagagggagagagggagggcgcttgattccgctttgactttgattg
tttctaccaaaatatttatttatacatatgcacacgataaaacgacagGA
ACGAGGTTGCCCTGGACTACAGTGCTGgtaagtcacggacaccaccgtat
atcctcctcctactccttcccagagctctcatttcttccgacctccctct
ctccctctctccctcccgaatccctccatagGTTTCCAGGGGGCTGTAGC
CGGGTTGAAGCAATTGAGTGCCCAAAACATTCTCGGGGACGACCGGTAG
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protein sequence of NO16G03130.1

>NO16G03130.1-protein ID=NO16G03130.1-protein|Name=NO16G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MAALILHPDLIPFFHSFDDKRQKFHRRPIDVQSLQSLHPIFLSFHILYGA
IVGGPREDDSHHDKCADFITNEVALDYSAGFQGAVAGLKQLSAQNILGDD
R*
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Synonyms
Publications