NO16G02950, NO16G02950 (gene) Nannochloropsis oceanica

Overview
NameNO16G02950
Unique NameNO16G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1763
Alignment locationchr16:864968..866730 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:864968..866730 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO16G02950 vs. NCBI_GenBank
Match: EWM23814.1 (hypothetical protein Naga_100603g2 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:  150 PTALFLAFGTPELLLAADLKKVLSDDIYGPMFLQALLLSVSGFVAAAALAAV 202
            P+AL  A G+ E+LLAADLKKVLSDDIYGPMFLQAL LSVSGF+AAAALA +
Sbjct:  135 PSAL-RAMGSSEILLAADLKKVLSDDIYGPMFLQALFLSVSGFLAAAALAGL 185
The following BLAST results are available for this feature:
BLAST of NO16G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23814.11.500e-978.85hypothetical protein Naga_100603g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02950.1NO16G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631386gene_6194Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100603g2gene6648Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02950.1NO16G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02950 ID=NO16G02950|Name=NO16G02950|organism=Nannochloropsis oceanica|type=gene|length=1763bp
TTTCGCTGCTGCTTCCCCATGACATTATGACATTATGACATTATGACATG
ACATTACGTTTGGTAGATAGTTTTCGCGTAGGATATCAATGCCTAAAGTG
GAAAAGGAGAAATACGACTTTGTCCAAGCACCCACGACCCACCCATCGTT
GCCTTCCACCCTCCGCCTTGTGATGCTCCTTGTCGCTCGTGTGGAACTGC
CCACTCACTTACCACCACATATATGCCAAACCCGTAGACGACAACGCCCC
AGCATGCCACAGACCTATAGCCAGGGTAGTACCATGGCCTACAGAACATC
TGCTATTTTCGTGGCCATCCTCCTCCTTCTCACCATCAGCATCACCCACG
CCTTCATCCTCCCGCACTCTGTATGTCAACCTGCCTCCTCTTCCTCTTCG
AGCCGCGTACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCGACT
ACATGCACAACCACACCACTTGACGGTACTGCCAATACCAGGCTGCTGTG
GTGGCAGAAGTAGAAGCAGCAGTAGCAGCAATAGTCCGACAGCACTCTTT
TTGGCCTTTGGCACGCCCGAGgtatgttgtcggtccgttttggctctccc
cagtctttcgttcggaggtataggggagagcgctactatttcctcattaa
agcggtgaactgccgtggtgcctggttttccaggttttggttgggtgtgg
tgtatgtgcacttattcttcaggatggtgatctgccctctgtccgggggg
gtcctggccatccatctcccatcttcccttccacctgctctcatgaaggc
tttgtcatgtcaaccacgtcttatttcaatgcgtctttacatagcctctt
accgaaattaagatgacatattttcctctctcacccttatccccaccccg
ccacccttcatcctacccctccctccctccctccttccctcagCTCCTCC
TCGCCGCGGACCTCAAAAAAGTGCTATCTGATGACATCTACGGGCCCATG
TTCCTGCAAGCTCTCCTTTTGTCCGTCTCTGGCTTTGTGGCCGCCGCAGC
CTTGGCAGgttcgagactgctccctccctccctcctctccctccctctct
ccctccctccctcaaacccatgttgtcgatacccatgatttgaaacctct
ctctctccctccctcctttccgtccaatcccctatccagCCGTCATCATC
TTCCGCGGCGATGTCCTGACGGACGAGCTCCTAGAGGAAGCCTACCAAGA
CCGGGATGAATTGCGCGAAAGGGTGGGCGCTACCGAGGAGGAGGACGGCA
CTTTAATAGTAGGGTTTAAGGAGCCCCCCGCCTTGCCCGTCACGGCCGAG
GCCACGGAGAAGGAAAGGGCCAGACGGGAGAGGGAGGAAAGATTAGTGGC
GGCGGGGGGGAAGCCAGGGGAGGTGAATGATTTTGAGGATTAGAAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGTCGTACAAACTGGAAATGTGGAA
ATGTGCGATGAGGAAATGAGTGAGGAGCACAAAACCGTCTGCGGTGGCAA
AAGGAGAAAATTGGAAGAAGAAGAAGACAGAGGAGGATCCAAAGGGGGAT
GGTGGTCAATGCATGATAGCCAAAGGGGGAATCCGAAGGTGAAAATGTGA
AGAATTAAAAATTACAAGAACCCAAACAAGAGCAAAAGGTACGAGTGAGA
CGACCAAAATGAAGAAGGCTTACGACAAAGGCGATAAAGGAGAAATAAGA
GACGAGGGGGCCT
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protein sequence of NO16G02950.1

>NO16G02950.1-protein ID=NO16G02950.1-protein|Name=NO16G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MPKVEKEKYDFVQAPTTHPSLPSTLRLVMLLVARVELPTHLPPHICQTRR
RQRPSMPQTYSQGSTMAYRTSAIFVAILLLLTISITHAFILPHSVCQPAS
SSSSSRVQQQQQQQQQQQQRLHAQPHHLTVLPIPGCCGGRSRSSSSSNSP
TALFLAFGTPELLLAADLKKVLSDDIYGPMFLQALLLSVSGFVAAAALAA
VIIFRGDVLTDELLEEAYQDRDELRERVGATEEEDGTLIVGFKEPPALPV
TAEATEKERARREREERLVAAGGKPGEVNDFED*
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Synonyms
Publications