NO16G02870, NO16G02870 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G02870 vs. NCBI_GenBank
Match: EWM23821.1 (transducin wd40 domain-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 145.6 bits (366), Expect = 1.000e-30 Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0
Query: 1118 SSPLLLVHLAGGLLLCWNLNKSEKRGRFVGRRQGRYRLRAAFNE-GGRGPGPKLLAGGSEDGRVMVWREG--------GGEEPIQALSGHGGVVSDVAWCPGNAQVLASCSDDGSVRIWAAE 1231
+SP LL++LAGG LL W+L K+ GRRQGRYRLRA FNE GG G +L+A GSEDGRV +W+EG G EEP++ L GHGGVV+DVAWCP N VLASCSDDGSVR+W E
Sbjct: 43 TSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPE 164
BLAST of NO16G02870 vs. NCBI_GenBank
Match: KLO10545.1 (WD40 repeat-like protein [Schizopora paradoxa]) HSP 1 Score: 81.3 bits (199), Expect = 2.400e-11 Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 0
Query: 1123 LVHLAGGLLLCWNLNKSEKRGRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHG-GVVSDVAWCPGNAQVLASCSDDGSVRIW 1228
LV+ A + W+L + +F G+RQGR+ +R+ F G + GSEDG+V VW G ++ LSGHG G V+DVAW P N ++ ASCSDD +VRIW
Sbjct: 538 LVNQAPDEIQLWDLETARMARKFTGQRQGRHVIRSCFG----GVDGNFIVSGSEDGKVYVWHRDTG-ALLEILSGHGDGSVNDVAWNPVNERMFASCSDDKTVRIW 638
BLAST of NO16G02870 vs. NCBI_GenBank
Match: XP_003617329.1 (WD repeat-containing protein 26 homolog [Medicago truncatula] >AET00288.1 transducin/WD40 repeat protein [Medicago truncatula]) HSP 1 Score: 80.5 bits (197), Expect = 4.100e-11 Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0
Query: 1122 LLVHLAGGLLLCWNLNKSEKR-GRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHGGVVSDVAWCPGNAQVLASCSDDGSVRIW 1228
LLV+L + WN+ + K G++ G R+ R+ +R+ F G +A GSED +V +W G EPI+AL GH G V+ V+W P N +LAS SDD ++RIW
Sbjct: 447 LLVNLLNQEINLWNIEGNPKLIGKYKGHRRSRFIIRSCFG----GLEQAFIASGSEDSQVYIWHRSSG-EPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 548
BLAST of NO16G02870 vs. NCBI_GenBank
Match: PBK97109.1 (WD40 repeat-like protein [Armillaria gallica]) HSP 1 Score: 80.5 bits (197), Expect = 4.100e-11 Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 0
Query: 1118 SSPLLLVHLAGGLLLCWNLNKSEKRGRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHG-GVVSDVAWCPGNAQVLASCSDDGSVRIWAA 1230
+S L++ A + W+LN +F G+RQGR+ +R+ F G + GSEDG V VW G ++ LSGHG G V+ VAW P N ++ ASCSDD ++RIW A
Sbjct: 516 NSQYALINHAPDEIRLWDLNLGRVARKFTGQRQGRHVIRSCFG----GMDGNFVVSGSEDGNVYVWHRDTG-ALLEVLSGHGEGSVNSVAWNPRNERMFASCSDDHTIRIWEA 623
BLAST of NO16G02870 vs. NCBI_GenBank
Match: XP_004491280.1 (PREDICTED: WD repeat-containing protein 26 [Cicer arietinum]) HSP 1 Score: 80.1 bits (196), Expect = 5.400e-11 Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0
Query: 1122 LLVHLAGGLLLCWNLNKSEKR-GRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHGGVVSDVAWCPGNAQVLASCSDDGSVRIW 1228
LLV+L + WN+ K G++ G R+ R+ +R+ F G +A GSED +V +W G EPI+AL GH G V+ V+W P N +LAS SDD ++RIW
Sbjct: 447 LLVNLLNQEIHLWNIEGDPKLVGKYKGHRRARFVIRSCFG----GLKQAFIASGSEDSQVYIWHRSSG-EPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 548
BLAST of NO16G02870 vs. NCBI_GenBank
Match: GAW01333.1 (WD40 repeat-like protein [Lentinula edodes]) HSP 1 Score: 79.7 bits (195), Expect = 7.000e-11 Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 0
Query: 1134 WNLNKSEKRGRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHG-GVVSDVAWCPGNAQVLASCSDDGSVRIWAA---EESL-VGGREGGPVMLRG 1247
W+L +F G+RQGR+ +R+ F G + GSEDG V VW G ++ LSGHG G V+ VAW P N ++ ASCSDD ++RIW A E SL V G PV G
Sbjct: 802 WDLRLGRMARKFTGQRQGRHIIRSCFG----GIDGSFVVSGSEDGNVYVWHRETG-SLLEVLSGHGEGSVNSVAWNPANERMFASCSDDKTIRIWEAPKPETSLDVSGHTDYPVSYNG 914
BLAST of NO16G02870 vs. NCBI_GenBank
Match: GAW01332.1 (WD40 repeat-like protein [Lentinula edodes]) HSP 1 Score: 79.7 bits (195), Expect = 7.000e-11 Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 0
Query: 1134 WNLNKSEKRGRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHG-GVVSDVAWCPGNAQVLASCSDDGSVRIWAA---EESL-VGGREGGPVMLRG 1247
W+L +F G+RQGR+ +R+ F G + GSEDG V VW G ++ LSGHG G V+ VAW P N ++ ASCSDD ++RIW A E SL V G PV G
Sbjct: 883 WDLRLGRMARKFTGQRQGRHIIRSCFG----GIDGSFVVSGSEDGNVYVWHRETG-SLLEVLSGHGEGSVNSVAWNPANERMFASCSDDKTIRIWEAPKPETSLDVSGHTDYPVSYNG 995
BLAST of NO16G02870 vs. NCBI_GenBank
Match: XP_020167598.1 (WD repeat-containing protein 26-like [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 79.3 bits (194), Expect = 9.100e-11 Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 0
Query: 1122 LLVHLAGGLLLCWNLNKSEKR-GRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHGGVVSDVAWCPGNAQVLASCSDDGSVRIWAAEESLVGGREGG 1241
LLV+L + WN+ R R+ G ++ R+ +R+ F G +A GSED +V +W G + I+ LSGH G V+ V+W P N +LAS SDD ++RIW +++ V R+ G
Sbjct: 454 LLVNLINEQIHLWNIRTDPIRVKRYTGHKRSRFVIRSCFG----GSEQAFIASGSEDAKVYIWHRASG-DVIETLSGHSGAVNCVSWNPTNPHMLASASDDHTIRIWGLKKATVKRRDAG 568
BLAST of NO16G02870 vs. NCBI_GenBank
Match: BAK03563.1 (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 79.0 bits (193), Expect = 1.200e-10 Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 0
Query: 1122 LLVHLAGGLLLCWNLNKSEKR-GRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHGGVVSDVAWCPGNAQVLASCSDDGSVRIWAAEESLVGGREGG 1241
LLV+L + WN+ R R+ G ++ R+ +R+ F G +A GSED +V +W G + I+ LSGH G V+ V+W P N +LAS SDD ++RIW +++ R+ G
Sbjct: 454 LLVNLINEQIHLWNIRNDPIRVKRYTGHKRSRFVIRSCFG----GSEQAFIASGSEDAKVYIWHRASG-DVIETLSGHSGAVNCVSWNPANPHMLASASDDHTIRIWGLKKATAKRRDAG 568
BLAST of NO16G02870 vs. NCBI_GenBank
Match: KDR73582.1 (hypothetical protein GALMADRAFT_620676 [Galerina marginata CBS 339.88]) HSP 1 Score: 79.0 bits (193), Expect = 1.200e-10 Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 0
Query: 1119 SPLLLVHLAGGLLLCWNLNKSEKRGRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGRVMVWREGGGEEPIQALSGHG-GVVSDVAWCPGNAQVLASCSDDGSVRIWAA 1230
S L++ A + W+L+ + R+ G+ QGR+ +R+ F G + GSEDG V VW G ++ LSGHG G V+ VAW P NA++ ASCSDD S+RIW A
Sbjct: 527 SQFALINHAPNEIHLWDLHTGQIACRYEGQTQGRHVIRSCFG----GIDSNFVVSGSEDGNVYVWHRESG-TLLEVLSGHGEGSVNSVAWNPTNARMFASCSDDRSIRIWEA 633 The following BLAST results are available for this feature:
BLAST of NO16G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G02870 ID=NO16G02870|Name=NO16G02870|organism=Nannochloropsis oceanica|type=gene|length=6121bpback to top protein sequence of NO16G02870.1 >NO16G02870.1-protein ID=NO16G02870.1-protein|Name=NO16G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1117bpback to top protein sequence of NO16G02870.2 >NO16G02870.2-protein ID=NO16G02870.2-protein|Name=NO16G02870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1247bpback to top Synonyms
Publications
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