NO16G02790, NO16G02790 (gene) Nannochloropsis oceanica

Overview
NameNO16G02790
Unique NameNO16G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr16:800075..801310 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:800075..801310 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G02790 vs. NCBI_GenBank
Match: XP_005854106.1 (hypothetical protein NGA_0502800, partial [Nannochloropsis gaditana CCMP526] >EKU22256.1 hypothetical protein NGA_0502800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.5 bits (197), Expect = 9.400e-12
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 0 
Query:  126 PRLGRVKAMSLLQSLVDDLRHQQGGDGSHLSSTSSSXXXXXXXXSTFPSSALDEEVEPFYALAQQCRQSDLPDIVLEVL 205
            PRLGRV+AMSLLQSLVD LR +QGGDGS LS+         XXX            EPFYALAQ+CRQSDLPD+VLEVL
Sbjct:  122 PRLGRVEAMSLLQSLVDTLRFEQGGDGSTLSA-------PPXXXXXXXXXXXXXXXEPFYALAQRCRQSDLPDMVLEVL 193
The following BLAST results are available for this feature:
BLAST of NO16G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854106.19.400e-1263.29hypothetical protein NGA_0502800, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02790.1NO16G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640190gene_6176Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02790.1NO16G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02790 ID=NO16G02790|Name=NO16G02790|organism=Nannochloropsis oceanica|type=gene|length=1236bp
ACAGGAATTTTCTTGCACACAAGAAGAGGAAGGTAACACTTATCCTTACC
AATCGTTGCTGGGTTCGAGGGAGAGTGCTGCTGGCCTAGCTTTCTGCTTA
TTCGTCACTTTTACCTTGGACCCTGCCGCACGCGAGACATAAATCATGAC
CGCAACAAGAATAAGAATTCAAACTTCAATGCATTGGTACATCCTCCTAC
TACTTGGCGTCAGTAGTGCGCAGCTCTTTGCCTTGTTGGTGAAGCAGGCG
GGGGCTTTTTCACCACCACCACCGACCTCCTGCCTCCCTTCCGCCAGTAC
CGCTGGAACTTCCACACGCGCGCAACAGGCAAAGAGTGCGTCCTGGGCAT
CATTATTGTCCCCCGCAAAAGTTTATCCAGGATACTACCAACCGGCTGTA
CCCTTTGATTCAATATCTGCCCGATATGCCACCACCGCTACTGCACCCCC
TCCTGCACCTGAATCGGAGCAGCAGCAGCAACAGCAGGCATCACCGTCCA
AGGAGAAAGTAGAAGCACTTCCTCGTCTGGGCCGTGTCAAAGCCATGTCT
CTCCTCCAATCCCTTGTGGACGACCTGCGCCATCAGCAGGGCGGAGACGG
AAGCCATCTTTCTTCCACCTCCTCCTCATGTTCGTCCTCCATCTCGCCCT
CCTCCACTTTCCCATCGTCGGCGCTGGACGAGGAAGTGGAGCCTTTCTAC
GCCTTGGCACAGCAATGCCGGCAGTCGGACCTGCCGGATATCGTCTTGGA
GGTGCTTAACTCATACCGAGCCATGGCCTCGCCGGGTGCTCTGTCCATAG
gtaggtcctctcttcgtccctccctccctccttctctttgtctcttctcc
cgcctaattccttcctacttcacttgtttttcacttttgtggtgtcaagt
tctaaatctttaagcctattatgtatgtatatacgatttcggccacggtt
gacatctatctttgaggcataagatagtataaacgtaacagtccccccat
ccctccctccctccctctctccctccctctcagGCGCCCCTCGAACGGCA
GACTTCTGGACATTGATCATAACAGCCCATGCCGCTTTGGGCGACCTCCG
TCTCTCCGCTCGTGTCTTCGAGGATGCCGTGCGGACGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGGGCACAAGCTGGCGTTGGTGCCGGGGGGG
GGGGAGGGAGCAGCTGGAGGGTCGGGAGGGTGTTAG
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protein sequence of NO16G02790.1

>NO16G02790.1-protein ID=NO16G02790.1-protein|Name=NO16G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTATRIRIQTSMHWYILLLLGVSSAQLFALLVKQAGAFSPPPPTSCLPSA
STAGTSTRAQQAKSASWASLLSPAKVYPGYYQPAVPFDSISARYATTATA
PPPAPESEQQQQQQASPSKEKVEALPRLGRVKAMSLLQSLVDDLRHQQGG
DGSHLSSTSSSCSSSISPSSTFPSSALDEEVEPFYALAQQCRQSDLPDIV
LEVLNSYRAMASPGALSIGAPRTADFWTLIITAHAALGDLRLSARVFEDA
VRTEGGREGGREGGGHKLALVPGGGEGAAGGSGGC*
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Synonyms
Publications