NO16G02780, NO16G02780 (gene) Nannochloropsis oceanica

Overview
NameNO16G02780
Unique NameNO16G02780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2097
Alignment locationchr16:796748..798844 -

Link to JBrowse

Properties
Property NameValue
DescriptionCalmodulin like myosin light chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:796748..798844 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Homology
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BLAST of NO16G02780 vs. NCBI_GenBank
Match: EWM23835.1 (calmodulin like myosin light chain [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 4.400e-56
Identity = 182/289 (62.98%), Postives = 200/289 (69.20%), Query Frame = 0 
Query:  302 NNLAGKMNIVANLAYVRKTQEVVELRNLSTDGPRLSKALGLLGGVMVATHQFYGLVSSFS----SLPSSSLVLPLLVLHQSLSLFLSLATILLECRSVLCSLHMHKKTREYFKFLSYLWGRGLLYLFTGAILSLRFLPFSPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLPHTIPTIDDPLLLLRSKFARADIYSQGKIPSTDLATICAELGSRLSHQELEGAILTLDANRNGEVAYDDFVEWWRGR 587
            +NL  KMNIVANLAYVRKTQEVV LR+LST GP  +K LG++ G  V  H+ YGL ++FS                  HQ L L L  + +LLECRSV CS  +HKKTREYFKFLSYLWGRGLLYL TGA+L+LRFL  +PT+        XXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXXXX                 R+KF RADIYSQGKIPSTDLA ICAELGSRLSHQELE AILTLDANR+GEV YDDFVEWW+GR
Sbjct:  229 SNLPSKMNIVANLAYVRKTQEVVSLRHLSTGGPAWTKILGMIAGGTVTGHECYGLAATFSFXXXXXXXXXXXXXXXXXHQGLCLLLGFSLLLLECRSVFCSTFLHKKTREYFKFLSYLWGRGLLYLVTGALLALRFLS-TPTA--------XXXXXXXXXXXXXXXXXXXXXPSPTYLDSFLSLYLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKFDRADIYSQGKIPSTDLAMICAELGSRLSHQELETAILTLDANRHGEVEYDDFVEWWQGR 508
The following BLAST results are available for this feature:
BLAST of NO16G02780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23835.14.400e-5662.98calmodulin like myosin light chain [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02780.1NO16G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100522g2gene6628Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02780.1NO16G02780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02780 ID=NO16G02780|Name=NO16G02780|organism=Nannochloropsis oceanica|type=gene|length=2097bp
ATGACCCCCTATATCATCTTTCACCCCAACGGTGCTAACGCGCTGCATAC
CACTCACTACTCTGCATTTAAATACCCTGAACAGGTCCCGCGCGAGCTCC
TGCCTTCAAGCCGCACCGCCCTGTCCCGTTCCATTTACCCTACAAGCCCC
AAGCATATGAAGGCTATCATCCACAAAACCACCACCACCCTAGCCAAACA
AGTACAGCAACAGGGCCAAGCAATCCACCGACAAGAGTCCACGGCCTTAG
TCTCCCGGAACGACGATGATGAGGACATTGATGAGGAGGTAATCTGTCTC
AAGGAAGAGGAGGATAAAGAGGGAGAGGTTGACGTGGAGCAAGGCAAGAG
CAAGACACCATCATCCTTGGTTGCCATGGCCTCGGGCGCTGGTGATACGT
GCCAAAGCCACAATAACCATTATCATAATAATTATCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGGCATAGCCCACA
GCCCTTGCGCCTCTCGCCCTTGTCTCCGCGAGCCCAACAGCACGCGGCTG
ATGAAGGCGAAGGAAACAAAGGGGGAAAGATAATCGGTCATCGAGACAGC
CAAGACAAAGTACAGACTTCAGGAGAAAGCAGCACCGGCACCTGCACTGC
CGCCGGGAGGAGCGGCACGCCAGGGAAGAGCAACAGCAGCAGCAGCAGCA
GCAGTGACAACTTAAGCAGTAGCAGAGATACTACCATCACTGTACAAGAC
CAATCATCACGTCCCAAGAAGACCAACAACAGTGGGATCACTTCCAAATG
CTCACAAGGCGGTAGAAGAGGAAACTACCACCCCCTTCCCCCACCCCCCC
TGGCCGAGCAAGACAACCACCATCAACAAGACGCACAAACAAGCAGCCTG
GCCAATAACCTGGCGGGGAAAATGAATATCGTCGCCAATCTGGCCTATGT
CCGCAAGACGCAAGAGGTAGTAGAGCTCCGCAACCTCTCTACCGACGGTC
CACGCTTGAGCAAGGCCCTCGGGCTGCTAGGAGGGGTGATGGTAGCCACT
CACCAATTTTACGGCCTCGTCTCCTCCTTCTCCTCCCTCCCGTCCTCTTC
CCTTGTCCTTCCCCTCCTCGTCCTCCATCAATCCCTTTCTCTCTTTCTCA
GCCTTGCCACAATCCTGCTAGAATGCCGCTCTGTCCTGTGCTCCCTCCAC
ATGCACAAAAAAACGCGCGAATACTTCAAATTCCTTTCCTACCTCTGGGG
CCGCGGCCTCCTCTATCTCTTCACCGGCGCCATTCTCTCCCTGCGGTTTC
TTCCTTTCTCCCCCACCTCCTCTTCTCCTTTCTCCTCTTCCTCTTCTCCT
CCTCCATTCCCTCCTACGACCCTAGTCGACATGCTCTCCTCTCTCTACTT
CACCCTCCTTGGCCTTTTCCTCCTCCTCCTCTCCCTCCACTACCACCGGC
GGCTTTCCTCCTCTTCCTCTTCCTCCTCATCATATTCCCTCTCTTCCTCC
TCCCCCTCCCTCCCACCCTCCCTCCTCCCCCATACCATTCCCACTATCGA
TGACCCCCTACTTCTCCTCCGCTCCAAATTTGCGCGAGCCGATATATACT
CCCAAGGCAAGATTCCCTCGACGGATCTGGCCACGATTTGTGCTGAATTA
GGGTCGCGTCTATCGCACCAGGAGTTGGAAGGCGCGATCTTGACGCTGGA
CGCAAATAGAAATGGGGAGGTGGCCTACGATGACTTTGTGGAATGGTGGC
GGGGGAGGTGAGCCTCAATGTAGTCTTTTATCTCCCCCTTTTCTCCTCTC
TCTCTCGATTTTTGCCTCCTCCTTCTCTCCTAAATCCTCGCCTCTGTCCT
ATCTTCCGCTTGTATATCTACATGACGTATCAACATGGCGTATCAATAAA
AGAGCGAAGGAGAGTTTGAGAGATTCAGATACAGGAGAAAGACAATACGT
TCCATGATTAAATTAAATTAATTAAGCGACACACCGTGCATGTGTTGTAG
AGGAGGAAAAGCACAATCAAGTTATTTCCAAAATAGAAGAAAAATGATAG
CGATAGCAGCTGAAGTCGACTTCTATGCGCGTCAAGCAAAGAGCGTT
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protein sequence of NO16G02780.1

>NO16G02780.1-protein ID=NO16G02780.1-protein|Name=NO16G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MTPYIIFHPNGANALHTTHYSAFKYPEQVPRELLPSSRTALSRSIYPTSP
KHMKAIIHKTTTTLAKQVQQQGQAIHRQESTALVSRNDDDEDIDEEVICL
KEEEDKEGEVDVEQGKSKTPSSLVAMASGAGDTCQSHNNHYHNNYHQQQQ
QQQQQQQQQQQRRHSPQPLRLSPLSPRAQQHAADEGEGNKGGKIIGHRDS
QDKVQTSGESSTGTCTAAGRSGTPGKSNSSSSSSSDNLSSSRDTTITVQD
QSSRPKKTNNSGITSKCSQGGRRGNYHPLPPPPLAEQDNHHQQDAQTSSL
ANNLAGKMNIVANLAYVRKTQEVVELRNLSTDGPRLSKALGLLGGVMVAT
HQFYGLVSSFSSLPSSSLVLPLLVLHQSLSLFLSLATILLECRSVLCSLH
MHKKTREYFKFLSYLWGRGLLYLFTGAILSLRFLPFSPTSSSPFSSSSSP
PPFPPTTLVDMLSSLYFTLLGLFLLLLSLHYHRRLSSSSSSSSSYSLSSS
SPSLPPSLLPHTIPTIDDPLLLLRSKFARADIYSQGKIPSTDLATICAEL
GSRLSHQELEGAILTLDANRNGEVAYDDFVEWWRGR*
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Synonyms
Publications