NO16G02770, NO16G02770 (gene) Nannochloropsis oceanica

Overview
NameNO16G02770
Unique NameNO16G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr16:793456..794658 -

Link to JBrowse

Properties
Property NameValue
DescriptionProtein required for ethanol metabolism
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:793456..794658 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
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BLAST of NO16G02770 vs. NCBI_GenBank
Match: EWM23833.1 (protein required for ethanol metabolism [Nannochloropsis gaditana])

HSP 1 Score: 526.6 bits (1355), Expect = 6.900e-146
Identity = 254/303 (83.83%), Postives = 272/303 (89.77%), Query Frame = 0 
Query:   14 LSLLLSLLVSLLLLPDTVGKKTNLTASSIPTSDDGCFFDYRIRRCEPVSHCHYKYRFLDATFSESCRLKVQKPRVTPYYKGKIAGNPAVIAAGATALFGMDIAAIIFTPLLQNFPISFNVVQGFILCLAGDTYFQILEQGGLRGVKKVGVKAWRAVRSGLIGALNNGLIHYSYYKYIDRRFPYHLFTEERFGKAEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGGVGWKKRFAKLPEKFRKRFLLTWLRSLQVWPVYDTILYAYVPASHRPLFNTFMSIAWGGYLSSISQPAAEE 317
            L L  +LL+  LL    V    NLT  + P SDDGC F+YR+RRCEPV+HCHYKYRFLDATFSESCRLKVQ+P  TP Y+ KI GNPA+IAAGATALFG+DIAAIIFTPLLQNFPI+FNVVQGFILCLAGDTYFQI+EQGGLRGVK+VGVKAWRAVRSGLIGALNNGL+HYSYYKYIDRRFPYHLFTEERFGK EGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDG  GW+KRFAK+PEKFRKRF LTWLRSLQVWP+YDTILYAYVPASHRPLFNTFMSIAWGGYLS ISQ   E+
Sbjct:   23 LFLRTALLLGALLGLFPVNAAKNLTTDATPLSDDGCHFNYRLRRCEPVAHCHYKYRFLDATFSESCRLKVQRPHTTPLYRSKINGNPALIAAGATALFGVDIAAIIFTPLLQNFPITFNVVQGFILCLAGDTYFQIVEQGGLRGVKRVGVKAWRAVRSGLIGALNNGLVHYSYYKYIDRRFPYHLFTEERFGKPEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGRNGWRKRFAKIPEKFRKRFRLTWLRSLQVWPIYDTILYAYVPASHRPLFNTFMSIAWGGYLSHISQVEGED 325
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BLAST of NO16G02770 vs. NCBI_GenBank
Match: CBJ31946.1 (Protein required for ethanol metabolism [Ectocarpus siliculosus])

HSP 1 Score: 300.8 bits (769), Expect = 6.200e-78
Identity = 151/276 (54.71%), Postives = 188/276 (68.12%), Query Frame = 0 
Query:   49 CFFDYRIRRCEPVSHCHYKYRFLDATFSESCRLKVQKPRVTPYYKGKIAGNPAVIAAGATALFGMDIAAIIFTPLLQNFPISFNVVQGFILCLAGDTYFQILEQGGLRGVKKVGVKAWRAVRSGLIGALNNGLIHYSYYKYIDRRFPYHLFTEERFGKAEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGGVGWKKRFAKLPEKFRKRFLLTWLRSLQVWPVYDTILYAYVPASHRPLFNTFMSIAWGGYLSSISQPAAEESGEGGIGV 325
            C + ++ +RCEP S C YKY+FLDAT SESCR    K     + +  +   PAV   GA  LF  D+AAI +T  L+ +P+ FNVVQGF+L  +GDT FQ+LEQG     K +G+K WR  RSG+IGALNNGL+HYSYYK+ID RFPY  FTE+R+G  +G   KL V + K+ +EWPTIG+YKIASM VLTA L G          L E+ +    LTW+RSLQVWP+YD ILYAYVP +HRPLFN+FMSIAWGGYLS +SQP   +  E  + V
Sbjct:  127 CSWSWKEKRCEPASLCQYKYQFLDATVSESCRQADFKVTKAAFEQADVQVKPAVALVGAAGLFAADLAAIRYTDWLKRYPLLFNVVQGFVLLASGDTLFQVLEQG---WQKVIGLKFWRMARSGIIGALNNGLVHYSYYKWIDGRFPYDKFTEKRWGPKDGAKSKLAVGFTKWALEWPTIGLYKIASMYVLTAVLSGST------KGLWERLQDSLFLTWIRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHKGDGEEEDVPV 393
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BLAST of NO16G02770 vs. NCBI_GenBank
Match: XP_005827881.1 (hypothetical protein GUITHDRAFT_113160 [Guillardia theta CCMP2712] >EKX40901.1 hypothetical protein GUITHDRAFT_113160 [Guillardia theta CCMP2712])

HSP 1 Score: 74.7 bits (182), Expect = 7.200e-10
Identity = 58/215 (26.98%), Postives = 100/215 (46.51%), Query Frame = 0 
Query:  103 IAAGATALFGMDIAAIIF------TPLLQNFPISFNVVQGFILCLAGDTYFQILEQGGLRGVKKVGVKAWRAVRSGLIGALNNGLIHYSYYKYIDRRFPYHLFTEERFGKAEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGGVGWKKRFAKLPEKFRKRFLLTWLRSLQVWPVYDTILYAYVPASHRPLFNTFMSIAWGGYLSSISQ 312
            + A ATA+  +D+  + F        L+++FP+  N +QG  L  AGD   Q + +  L+G K+  +   R  ++ L+G +N GL  Y +Y  ++   P    T        G +  L V   K  ++    G + I S   L + +D     +    +  +KFR  F+ TWL   + WP+Y+ + +  +P   RP+ +   S+ W  Y+S  SQ
Sbjct:   46 VYAAATAITALDVGIVSFLRLPSGNLLVESFPLITNSIQGAGLVFAGDLVSQAVVK-HLQGTKEFLLDWTRLAKASLVGVINVGLWPYYWYLAVETFLPAQAPTGFGLPVWLGEWGLLLV---KIVLDSIINGSFSIFSSFSLWSLMD-----RDTVEQWKDKFRNSFMETWLMDWKSWPLYNILCFTIIPFRLRPMTSGIASMFWNAYVSHQSQ 251
The following BLAST results are available for this feature:
BLAST of NO16G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23833.16.900e-14683.83protein required for ethanol metabolism [Nannochlo... [more]
CBJ31946.16.200e-7854.71Protein required for ethanol metabolism [Ectocarpu... [more]
XP_005827881.17.200e-1026.98hypothetical protein GUITHDRAFT_113160 [Guillardia... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02770.1NO16G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100522g4gene6626Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02770.1NO16G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02770 ID=NO16G02770|Name=NO16G02770|organism=Nannochloropsis oceanica|type=gene|length=1203bp
ATGGCTATTCAAGGAGGCTCCACCAGACTTATCTCCTCCCTCTCCCTGCT
TCTTTCCTTACTCGTCTCCCTTCTCCTCCTGCCCGACACGGTCGGGAAAA
AGACCAACCTCACCGCGTCCTCCATCCCCACCTCCGACGATGGCTGCTTC
TTCGATTATCGCATCCGTCGGTGCGAGCCCGTGAGTCACTGCCACTACAA
GTACCGATTCCTCGACGCCACATTCTCGGAGTCGTGTCGTTTGAAAGTTC
AAAAACCGCGCGTCACGCCATACTACAAGGGCAAGATCGCTGGAAACCCG
GCCGTGATCGCCGCAGGGGCCACTGCCTTGTTTGGTATGGACATTGCGGC
CATCATCTTCACACCATTGCTGCAGAATTTTCCGATTAGTTTCAATGTTG
TCCAGGGGTTCATTCTGTGCCTGGCAGGCGATACGTACTTTCAGATCTTG
GAGCAGGGGGGCTTGAGGGGCGTGAAGAAGGTGGGGGTAAAGGCCTGGCG
CGCTGTGAGGTCCGGCTTGATCGGCGCCTTGAACAATGGGCTGATCCACT
ACAGCTACTACAAATACATCGATCGTCGGTTCCCGTACCACTTATTTACA
GAGGAGCGATTCGGGAAGGCCGAGGGGACGTACTACAAGCTATGTGTGGC
CTGGGCCAAGTATTGGATCGAATGGCCGACCATCGGGGTTTATAAGATCG
CGTCTATGATGGTTTTGACCGCAGCGTTGGACGGAGGGGTAGGGTGGAAG
AAGCGCTTTGCCAAGCTGCCGGAGAAGTTTCGAAAGCGCTTTTTGCTGAC
GTGGTTGCGGTCTTTGCAAGTGTGGCCGGTGTATGACACGATTTTATATG
CCTACGTGCCTGCGAGCCATCGGCCGCTGTTTAACACCTTCATGTCAATT
GCTTGGGGGGGCTACCTGAGCTCGATTTCTCAACCGGCGGCGGAGGAGAG
TGGGGAGGGAGGTATCGGTGTGTTGGAGGAGTTGAAGGAAGCCGTGAGGG
AGGAGAGGGAGAGACATGTGCGTATGGAGGGTGGGGAGGAACAGGAGGAA
GGGAAGGAGGAGGCACTGGAGCACGATGCATTGATGGAAGAAGTGTGGCA
AGAGGCTAAGGAGGAGGCCGAAAGAAGAAGGAGGATCATGGCGGGCGGAG
GGGAAGAGGAGGAAGGGGAAGAGGAAGAGGACGAGGATAAAGAAGAGCTG
TAA
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protein sequence of NO16G02770.1

>NO16G02770.1-protein ID=NO16G02770.1-protein|Name=NO16G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MAIQGGSTRLISSLSLLLSLLVSLLLLPDTVGKKTNLTASSIPTSDDGCF
FDYRIRRCEPVSHCHYKYRFLDATFSESCRLKVQKPRVTPYYKGKIAGNP
AVIAAGATALFGMDIAAIIFTPLLQNFPISFNVVQGFILCLAGDTYFQIL
EQGGLRGVKKVGVKAWRAVRSGLIGALNNGLIHYSYYKYIDRRFPYHLFT
EERFGKAEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGGVGWK
KRFAKLPEKFRKRFLLTWLRSLQVWPVYDTILYAYVPASHRPLFNTFMSI
AWGGYLSSISQPAAEESGEGGIGVLEELKEAVREERERHVRMEGGEEQEE
GKEEALEHDALMEEVWQEAKEEAERRRRIMAGGGEEEEGEEEEDEDKEEL
*
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Synonyms
Publications