NO16G02750, NO16G02750 (gene) Nannochloropsis oceanica

Overview
NameNO16G02750
Unique NameNO16G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1459
Alignment locationchr16:791700..793158 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:791700..793158 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G02750 vs. NCBI_GenBank
Match: XP_005854601.1 (hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526] >EKU21753.1 hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.8 bits (608), Expect = 2.800e-59
Identity = 153/361 (42.38%), Postives = 192/361 (53.19%), Query Frame = 0
Query:   30 FPPSLERKTTTRLLLARLTSCLSSPIPLHYHLHHPRRCTSSFIVSPFNSFLYYRHYPCRRHACFASSIPNASTPTDLPNDPSSSSSTIAIEHDLTQALLQWLKAHAS----SQASPCSPPTPPLLGVRPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMYEIPYDLDAVVSSEDAFSAAPPEFMCGNGYLLRVKVAFKDILCDGRPEGISAQLFRARASREMERQGMRVCTRWLEEEG------XXXXXXXXXXXGGKSMRCLGLGHLINDPKGSECKANVVFKTTRL----------TADSNPPSLPPSLLPHLPTLSASGDNRMERVVVAVXXXXXXXXGRNGKELFVNYGQDPMSVG 371
            FPP    +  T   L+ +T+ LSSP             +SSF  SP                C      +AS   +  ++    SS+   E  L QAL+ WL+ H S    S A+P SPPT  LL VRPSSIPNAGRGLWL P Q+ +KGDILTLYPG++YE+P+DL A++ SEDAF+ APP+FM GN +LLRV V+ +D LCDGRP G+SA +FRA + R+ ER G++V   WLE EG                 GG     L  GHLINDP+GS  + NV F+T R+                            TLSASG+N  ERVV+AV        G  GKELFV Y QDP  +G
Sbjct:   23 FPPLRRARGWTPSSLSAVTAALSSP-------------SSSFYPSPL---------------CVHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPLSPPT--LLDVRPSSIPNAGRGLWLKPYQNVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGGGTAKERGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQDPTHLG 353          
BLAST of NO16G02750 vs. NCBI_GenBank
Match: EWM23845.1 (hypothetical protein Naga_100273g2 [Nannochloropsis gaditana])

HSP 1 Score: 237.7 bits (605), Expect = 6.300e-59
Identity = 156/361 (43.21%), Postives = 193/361 (53.46%), Query Frame = 0
Query:   30 FPPSLERKTTTRLLLARLTSCLSSPIPLHYHLHHPRRCTSSFIVSPFNSFLYYRHYPCRRHACFASSIPNASTPTDLPNDPSSSSSTIAIEHDLTQALLQWLKAHAS----SQASPCSPPTPPLLGVRPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMYEIPYDLDAVVSSEDAFSAAPPEFMCGNGYLLRVKVAFKDILCDGRPEGISAQLFRARASREMERQGMRVCTRWLEEEG------XXXXXXXXXXXGGKSMRCLGLGHLINDPKGSECKANVVFKTTRL----------TADSNPPSLPPSLLPHLPTLSASGDNRMERVVVAVXXXXXXXXGRNGKELFVNYGQDPMSVG 371
            FPP    +  T   L+ +T+ LSSP             +SSF  SP        H         AS   N     +L N    SSS +  E  L QAL+ WL+ H S    S A+P  PPT  LL VRPSSIPNAGRGLWL P Q+ +KGDILTLYPG++YE+P+DL A++ SEDAF+ APP+FM GN +LLRV V+ +D LCDGRP G+SA +FRA + R+ ER G++V   WLE EG                 GG     L  GHLINDP+GS  + NV F+T R+                           PTLSASG+N  ERVV+AV        G  GKELFV Y Q+P  +G
Sbjct:   46 FPPLRWARGWTPSSLSAVTAALSSP-------------SSSFYPSPLRVHCQAYH---------ASQSAN-----ELSNILPISSSAVP-ERKLDQALVPWLEKHTSLPSFSSATPLLPPT--LLDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQEPTHLG 376          
BLAST of NO16G02750 vs. NCBI_GenBank
Match: PSC76244.1 (hypothetical protein C2E20_0376 [Micractinium conductrix])

HSP 1 Score: 109.0 bits (271), Expect = 3.400e-20
Identity = 102/288 (35.42%), Postives = 137/288 (47.57%), Query Frame = 0
Query:  130 WLKA-HASSQASPCSPPTPPLLGVRPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMYEIPY----DLDAVVSS----EDAFSAAPPEFMCGNGYLLRVKVAFKDILCDGRPEGISAQLFRARASREMERQGMRVCTRWLEE----------------------------------EGXXXXXXXXXXXGGKSMRCLGLGHLINDPKGSECKANVVFKTTRLTADSNPPSLPPSLLPHLPTLSASGDNRME----RVVVAVXXXXXXXXGRNGKELFVNYGQDPMSVG 371
            WL A  A+ +    +      L V PS+IP AGRG++L PG +A +GDILTLYPG+ +++        DA+ +S    ++ F+ APP FM  N Y+L+ + A +  L DGRP G+SAQ F A A+ +    G+ V   WL+E                                    XXXXXXXXXXX    +R   LGHLIN        A+V ++   L AD     LPPSLL  LPTL A   +        VVV          G    EL  +YG DP+++G
Sbjct:    7 WLAACEAAVRGGSAAAHPAARLAVAPSTIPEAGRGVFLQPGSAARRGDILTLYPGLAHDMQAVQAGIQDAMAASIPAADECFAPAPPAFMAYNQYMLQRRCAGRAFLIDGRPNGLSAQRFAAAAAVD----GLPVNAAWLDEMHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLLRKTALGHLIN----HGTPASVTYELCPLPAD-----LPPSLLRWLPTLEAGDASASPGLRWAVVVTAAAELHVPAGGPPLELLADYGADPLTLG 281          
BLAST of NO16G02750 vs. NCBI_GenBank
Match: XP_005851253.1 (hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis] >EFN59151.1 hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis])

HSP 1 Score: 92.4 bits (228), Expect = 3.300e-15
Identity = 75/226 (33.19%), Postives = 108/226 (47.79%), Query Frame = 0
Query:  153 RPSSI--PNAGRGLWLNPGQSASKGDILTLYPGMMYEIP--YDLDAVVSSEDAFSAAPPEFMCGNGYLLRVKVAFKDILCDGRPEGISAQLFRARAS--REMERQGMRVCTRWLEEEGXXXXXXXXXXXGGKSMRCLGLGHLINDPKGSECKANVVFKTTRLTADSNPPSLPPSLLPHLPTLSASGDNRMERVVVAVXXXXXXXXGRNGK--ELFVNYGQDPMSVG 371
            RPS I  P+AG G++L  G     G ILTLYPG+++++     L  V + +DA + APP +   N YLL+++      L DG+P G+SAQ F+A A+     + +   V   WL   G               +R   LGH++N   G    AN  F    L     P +LPPSL  ++P+LS  G    E   V +           G   EL V+YG +P+S+G
Sbjct:  611 RPSGIQHPDAGDGVFLTAG-GCPAGGILTLYPGLVHDMGDFVLLLGVSAPDDACAPAPPAWTLDNHYLLQLRCLNAACLVDGQPGGLSAQRFQAAAASWAAGQPEAALVNASWLALGGQQRAELDGRLGCEALLRQAALGHMLN--HGPAAAANAAFDMCPL-----PAALPPSLQRYVPSLSVGGRGEEEVRWVPLVTARTALGATAGSPVELLVDYGINPLSLG 828          
BLAST of NO16G02750 vs. NCBI_GenBank
Match: EWM22152.1 (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 9.500e-15
Identity = 84/266 (31.58%), Postives = 113/266 (42.48%), Query Frame = 0
Query:  153 RPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMYEIPYDLDAVVSSED-AFSAAPPEFMCGNGYLLRV--KVAFKDILCDGRPEGISAQLFRARASRE---------------------MERQGMRVCTRWLE------EEGXXXXXXXXXXXGGKSMRC-------------LGLGHLINDPKGSECKANVVFKTTRLTADSNPPSLPPSLLPHLPTLS-ASG-DNRMERVVVAVXXXXXXXXGRNGKELFVNYGQDPMSVGREG 374
            RPS++P AG GL+L  G+    G+++T +PG++Y IPYDL+A +  ++ +FS  PP F+  N YLLR    V  + +L DG P+GISA  F A   R                       ER+   V   W E        G           GG+ +               LGLGHL+NDP   E K N  F    L     P  LPP LL  +P L  A G  +R   V+V          G    E++V Y      V + G
Sbjct:  193 RPSTLPGAGMGLFLVQGR-VHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPHSPE-KYNAEFHLCEL-----PSDLPPHLLRFIPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEVCKHG 451          
BLAST of NO16G02750 vs. NCBI_GenBank
Match: EWM22151.1 (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 1.700e-11
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 0
Query:  153 RPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMYEIPYDLDAVVSSED-AFSAAPPEFMCGNGYLLRV--KVAFKDILCDGRPEGISAQLFRARASR 247
            RPS++P AG GL+L  G+    G+++T +PG++Y IPYDL+A +  ++ +FS  PP F+  N YLLR    V  + +L DG P+GISA  F A   R
Sbjct:  193 RPSTLPGAGMGLFLVQGR-VHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQR 288          
BLAST of NO16G02750 vs. NCBI_GenBank
Match: PRW60176.1 (SET domain-containing 9 [Chlorella sorokiniana])

HSP 1 Score: 77.8 bits (190), Expect = 8.300e-11
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0
Query:  150 LGVRPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMY---EIPYDLDAVVSSEDAFSAAPPEFMCGNGYLLRVKVAFKDILCDGRPEGISAQLFRARA 245
            L V PS+IP AGRG+++  G     G IL+LYPG++Y   ++     A   +EDAF+ APP +   N YLL ++   +  + DGRP G+SA+L+R  A
Sbjct:   76 LSVGPSTIPGAGRGVFIT-GGCCPAGSILSLYPGLVYDSCDVEEQQAASALAEDAFAPAPPPWTMDNHYLLALRCLGRSFMIDGRPFGLSARLWRRAA 172          
The following BLAST results are available for this feature:
BLAST of NO16G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_005854601.12.800e-5942.38hypothetical protein NGA_0209800, partial [Nannoch... [more]
EWM23845.16.300e-5943.21hypothetical protein Naga_100273g2 [Nannochloropsi... [more]
PSC76244.13.400e-2035.42hypothetical protein C2E20_0376 [Micractinium cond... [more]
XP_005851253.13.300e-1533.19hypothetical protein CHLNCDRAFT_49994 [Chlorella v... [more]
EWM22152.19.500e-1531.58hypothetical protein Naga_100064g16 [Nannochlorops... [more]
EWM22151.11.700e-1144.33hypothetical protein Naga_100064g16 [Nannochlorops... [more]
PRW60176.18.300e-1141.84SET domain-containing 9 [Chlorella sorokiniana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02750.1NO16G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100273g2gene6623Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02750.1NO16G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02750 ID=NO16G02750|Name=NO16G02750|organism=Nannochloropsis oceanica|type=gene|length=1459bp
ATGCATACCGCAAAACATTACACAGCCGCGCCGGCAGCATTTTTGGCGCA
TGCGCGTGGCTTGACTTCTATCTCTGTTCTACCGCTTTTTCCACCGAGCC
TTGAAAGAAAAACGACGACTCGACTACTTCTCGCCCGCTTGACCTCTTGC
CTCTCCTCCCCCATCCCATTGCACTACCACCTCCACCACCCGCGGCGATG
TACCTCATCCTTTATCGTTTCCCCCTTTAATTCCTTTCTCTACTACCGCC
ATTACCCCTGTCGGCGACATGCATGCTTCGCCTCCTCCATCCCCAATGCA
TCTACCCCTACCGATCTCCCAAACGATCCCTCCTCCTCCTCCTCCACTAT
CGCCATCGAGCACGACCTTACCCAAGCCCTCCTCCAATGGCTTAAAGCGC
ATGCTTCGTCCCAGGCATCGCCTTGCTCCCCTCCTACTCCACCTCTCCTC
GGTGTCCGGCCTTCCTCTATTCCCAACGCGGGGCGAGGCCTTTGGCTTAA
TCCAGGCCAATCTGCGTCTAAAGGCGACATCCTGACGCTATATCCGGgta
tgtgcttatggcgcaaggtgaccccagtcatactcttcctgtatggtgcc
ctcgtctcttctgtattcgtcgtctcttgctcactctctcttccctgact
tcttccctccctccccgctgccccctcgccctccctccctccctccctcc
ctcagGAATGATGTACGAGATTCCGTACGATCTTGATGCTGTTGTCTCTT
CAGAAGACGCCTTCTCTGCAGCCCCGCCGGAATTCATGTGCGgtaagaag
ggtgggagggagggaaggaggaaggaaggggataagggggagttggtgga
gggaaagagaagagcaaggcaaggtgctcgctcatccatgttcttccacc
acacgtatacaaatatatagGCAATGGCTATCTCCTTCGTGTGAAGGTAG
CGTTCAAAGACATTTTGTGCGACGGTCGGCCGGAAGGGATTTCAGCGCAG
CTTTTCCGTGCTCGTGCTTCGAGGGAGATGGAAAGGCAGGGGATGAGGGT
CTGTACGCGGTGGCTGGAGGAAGAAGGAGGGAGCGGGGGAGGGAGGGAGG
AAGGGGAGGAGGGAGGGAAATCGATGAGATGCCTAGGACTAGGACACCTG
ATCAATGACCCGAAGGGAAGTGAATGCAAAGCGAATGTGGTCTTCAAAAC
GACGCGTTTGACCGCTGATTCCAACCCTCCCTCCCTCCCTCCCTCCCTGT
TGCCCCACCTCCCAACCCTGTCTGCCTCTGGGGATAACCGGATGGAGCGC
GTGGTGGTGGCAGTTGTAGCATTGGAAGGGATGGAGGGTGGGCGGAATGG
GAAAGAATTGTTCGTGAATTATGGGCAGGATCCGATGAGTGTAGGGAGGG
AGGGGGGGAGGGCGGGAGGGTGGGAGGACAATGTACAGGAGATGAAAAGG
CAAGAATAG
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protein sequence of NO16G02750.1

>NO16G02750.1-protein ID=NO16G02750.1-protein|Name=NO16G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MHTAKHYTAAPAAFLAHARGLTSISVLPLFPPSLERKTTTRLLLARLTSC
LSSPIPLHYHLHHPRRCTSSFIVSPFNSFLYYRHYPCRRHACFASSIPNA
STPTDLPNDPSSSSSTIAIEHDLTQALLQWLKAHASSQASPCSPPTPPLL
GVRPSSIPNAGRGLWLNPGQSASKGDILTLYPGMMYEIPYDLDAVVSSED
AFSAAPPEFMCGNGYLLRVKVAFKDILCDGRPEGISAQLFRARASREMER
QGMRVCTRWLEEEGGSGGGREEGEEGGKSMRCLGLGHLINDPKGSECKAN
VVFKTTRLTADSNPPSLPPSLLPHLPTLSASGDNRMERVVVAVVALEGME
GGRNGKELFVNYGQDPMSVGREGGRAGGWEDNVQEMKRQE*
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Synonyms
Publications