NO16G02690, NO16G02690 (gene) Nannochloropsis oceanica

Overview
NameNO16G02690
Unique NameNO16G02690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1318
Alignment locationchr16:776583..777900 +

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Properties
Property NameValue
DescriptionExtrinsic protein in photosystem II
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:776583..777900 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_domain
Homology
BLAST of NO16G02690 vs. NCBI_GenBank
Match: XP_005854604.1 (extrinsic protein in photosystem II [Nannochloropsis gaditana CCMP526] >EKU21756.1 extrinsic protein in photosystem II [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 385.2 bits (988), Expect = 1.400e-103
Identity = 198/222 (89.19%), Postives = 212/222 (95.50%), Query Frame = 0
Query:    1 MRTISFLALATPALAFMTPMPATERNVMRMSAEQPKSPLTVSNFVKGFATASMFFNFATMPLTSMPEAAMAKAGEGPKQSVFGLGGDAASSPFVEDTPTYSPYSPYGTGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAFLKAI 223
            MRTISFLALATPALAFMTPMP TERNVMRM+AE+  SPL++ N VKGFATASMFFNFATMPLTSMPE+A+AK+GEGPKQSVFGLGGDAASSPFV+D PTYSPYSPYGTGENALFKPLN +DVK YT+KVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRR+G KLAENKQSPEASKALKSLFQDIEDLTVASRRKQ+D+SQ AYSRAQADFDAFLKA+
Sbjct:    1 MRTISFLALATPALAFMTPMPVTERNVMRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 222          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: EWM23838.1 (extrinsic protein in photosystem ii [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 1.900e-89
Identity = 172/195 (88.21%), Postives = 186/195 (95.38%), Query Frame = 0
Query:   28 MRMSAEQPKSPLTVSNFVKGFATASMFFNFATMPLTSMPEAAMAKAGEGPKQSVFGLGGDAASSPFVEDTPTYSPYSPYGTGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAFLKAI 223
            MRM+AE+  SPL++ N VKGFATASMFFNFATMPLTSMPE+A+AK+GEGPKQSVFGLGGDAASSPFV+D PTYSPYSPYGTGENALFKPLN +DVK YT+KVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRR+G KLAENKQSPEASKALKSLFQDIEDLTVASRRKQ+D+SQ AYSRAQADFDAFLKA+
Sbjct:    1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: CEM21093.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 121.7 bits (304), Expect = 2.900e-24
Identity = 77/203 (37.93%), Postives = 113/203 (55.67%), Query Frame = 0
Query:   26 NVMRMSAEQPKSPLTVSNFVKGFATASMFFNFATMPLTSMPEAAMAKAGEGPKQSVFGLGGDA------ASSPFVEDTPTYSPYSPYGTGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAFLKAI 223
            + ++M+A + +            A AS+   FA       P AA AK G+ PK S FG GG A      A+    ++ P YSPYS YGTGE+ ++ P + ++V     KV ES  R+ K+  YL+++ WEEVR EL+RQ YDLR     LA    +P+ASKA K  ++D++ L+VA+RRK+ D +   Y  A  D  +F+K +
Sbjct:   36 SALQMTANEDEVLGRRDAMTSSLAAASLLSLFA-------PLAASAKTGDAPKASYFGFGGGASTLSEGAAYGSDQEAPLYSPYSVYGTGEDRVWVPNSKQEVGRKVKKVEESAGRIAKVKDYLDQQLWEEVRMELSRQTYDLRENMNSLASVSGNPDASKAAKKFYRDLDKLSVAARRKEQDAALGFYKDAVNDLKSFIKVV 231          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: CBN75463.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.7 bits (226), Expect = 3.200e-15
Identity = 63/163 (38.65%), Postives = 92/163 (56.44%), Query Frame = 0
Query:   69 AMAKAGEGPKQSVFG-LGGD----AASSPFVEDTPTYSPYSPYGTGENALFKPLNDEDVKFYTAK----VTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAFLKAI 223
            A+AKAG G KQ+ FG +G D       S +  ++ TYSPYSPY  G++AL+K     D  F T      + +S+KR+  +  ++E K+WEE+R+ LT + Y LR A   LA +K  P+A+   K  ++DIE LTV +R+K       AY+ AQ     +L  I
Sbjct:   56 ALAKAGTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYK---SSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADK--PQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 213          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: GAX21201.1 (hypothetical protein FisN_26Lh159 [Fistulifera solaris] >GAX18857.1 hypothetical protein FisN_26Hh159 [Fistulifera solaris])

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-14
Identity = 63/165 (38.18%), Postives = 88/165 (53.33%), Query Frame = 0
Query:   65 MPEAAMAKAGEGPKQSVFGLGGDAASSP------FVEDTPTYSPYSPYG-TGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAFLKAI 223
            +P AA A  GE P+ SVFGL GD +S          + +  YSPYS YG  G+ +LF P +        A + E+KKR+DK+ K++EKK W EV TEL R M + R A   LA   Q+PE  K   + F+ IE   + +RRK  +    +   + A   AF+ +I
Sbjct:   38 LPAAANAAVGESPRFSVFGLIGDGSSYSEGAAYGTDQSSKLYSPYSVYGEAGDGSLFNPADPSIAGKKKAVLAETKKRLDKLPKFIEKKAWFEVTTELDRYMGETRAAVRYLA---QTPEQKKKATAFFKAIESTDINARRKNQEACAASQKESVAALAAFVSSI 199          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: XP_002286571.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96212.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.1 bits (209), Expect = 3.000e-13
Identity = 60/146 (41.10%), Postives = 83/146 (56.85%), Query Frame = 0
Query:   65 MPEAAMAKAGEGPKQSVFGLGGDAAS----SPFVED--TPTYSPYSPYGT--GENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQID 203
            +P AA A AGE P+ SVFG+ GD  S    + +  D    TYSPYS YG    ++ALF+  N  ++      + ES+KR+  +  Y+EKKQW  V+ ELTR MY+ R A   LA   Q+PE  K  K+ FQ IE+ ++ +  K  D
Sbjct:   49 LPAAANAAAGESPRFSVFGVIGDGTSYSEGAAYGSDQSAETYSPYSVYGKVGSKDALFEAGNAGEIARKKGYIVESQKRLKNLPGYVEKKQWFNVKDELTRYMYETRGAVRGLA---QTPEQKKLAKAFFQAIEEASLQATLKNGD 191          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: XP_002180307.1 (oxygen-evolving enhancer protein 3 [Phaeodactylum tricornutum CCAP 1055/1] >EEC48498.1 oxygen-evolving enhancer protein 3 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.0 bits (206), Expect = 6.600e-13
Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = 0
Query:   65 MPEAAMAKAGEGPKQSVFGLGGDAAS----SPFVED--TPTYSPYSPYGTGEN--ALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAFLKAI 223
            +P AA A  GE P+ SVFGL GD  S    + +  D  +  YSPYS YG   N  +L+K  N E +    A + E++KR+ K+  Y+EKK+W EV TEL+R MY+ R A   L    +SPE  K   + F+ IE   +++R+K    +  A +   +  DAF  ++
Sbjct:   38 LPVAANAAVGESPRFSVFGLIGDGTSYSEGAAYGTDQASKLYSPYSVYGEVGNPDSLYKDTNPEYLARKKAILAETRKRLQKLPAYIEKKKWFEVTTELSRFMYETRGAIDFLG---KSPEQKKKAVAFFKAIEKTNLSARQKDQAAAASAAADTISTLDAFTSSL 200          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: XP_009040815.1 (hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens] >EGB04428.1 hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens])

HSP 1 Score: 82.0 bits (201), Expect = 2.500e-12
Identity = 54/145 (37.24%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   73 AGEGPKQSVFGLGG------DAASSPFVEDTPTYSPYSPYGT--GENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYS 210
            AGE PK S FG+GG      + A     +    YSPYS YG                     A   +S KRV K  +Y+EKK WE+VR+EL RQ+Y++R     LA     PEA+ A K  +QD+E++ + S+RK+   + DAY+
Sbjct:   48 AGESPKFSFFGIGGNGGTYSEGAMYGSDQKDAVYSPYSVYGKLGDXXXXXXXXXXXXXXXXXAMFADSSKRVAKTKQYIEKKSWEDVRSELERQVYNMRGTMNYLAAASGKPEATAAAKKFYQDMEEVNLLSKRKKQAAALDAYA 192          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: EJK70163.1 (hypothetical protein THAOC_08500 [Thalassiosira oceanica])

HSP 1 Score: 79.3 bits (194), Expect = 1.600e-11
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 0
Query:   74 GEGPKQSVFGLGGDAAS----SPFVED--TPTYSPYSPYGT--GENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQAD 215
            GE P+ SVFG+ GD  S    + +  D  +  YSPYS YG     +AL+   N  +V+     + ES+KR+ K+  Y+E+K+W  V+ ELTR MY+ R A   LAE   +PE  K  KS FQ IE+ ++ +  K    +QD  + A AD
Sbjct:   60 GESPRFSVFGVIGDGTSYSEGAAYGSDQSSAVYSPYSVYGNVGSSDALYSANNAGEVERKKGFIAESQKRLSKLPAYVERKEWFNVKDELTRYMYETRGAVRGLAE---TPEQKKIAKSFFQAIEEASLQATLK----NQDKCAAASAD 201          
BLAST of NO16G02690 vs. NCBI_GenBank
Match: BAG85211.1 (extrinsic protein in photosystem II [Chaetoceros gracilis])

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 0
Query:   74 GEGPKQSVFGLGGDAAS----SPFVED--TPTYSPYSPYG-TGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQIDLSQDAYSRAQADFDAF 219
            GE P+ SVFGL GD  S    + +  D     YSPYS Y   GE +L+KP N E +    A + E+K R+ KI  Y++KK+W  V+ ELTR MY+ R A   L+ +    E ++     F+ +ED   A+  K+ D  + +  +A A  DAF
Sbjct:   59 GESPRFSVFGLVGDGTSYSEGAAYGTDQADKLYSPYSVYSPEGEKSLYKPDNAEYLARKKAVLAETKNRLQKIPAYVDKKEWFNVKDELTRYMYETRGAVRSLSSSVTQKEKAEV---FFRALEDTYGAATLKKGDAVKASNDKAIAALDAF 207          
The following BLAST results are available for this feature:
BLAST of NO16G02690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
XP_005854604.11.400e-10389.19extrinsic protein in photosystem II [Nannochlorops... [more]
EWM23838.11.900e-8988.21extrinsic protein in photosystem ii [Nannochlorops... [more]
CEM21093.12.900e-2437.93unnamed protein product [Vitrella brassicaformis C... [more]
CBN75463.13.200e-1538.65conserved unknown protein [Ectocarpus siliculosus][more]
GAX21201.11.200e-1438.18hypothetical protein FisN_26Lh159 [Fistulifera sol... [more]
XP_002286571.13.000e-1341.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002180307.16.600e-1337.35oxygen-evolving enhancer protein 3 [Phaeodactylum ... [more]
XP_009040815.12.500e-1237.24hypothetical protein AURANDRAFT_72519 [Aureococcus... [more]
EJK70163.11.600e-1138.93hypothetical protein THAOC_08500 [Thalassiosira oc... [more]
BAG85211.11.800e-1037.50extrinsic protein in photosystem II [Chaetoceros g... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02690.1NO16G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593995gene_6167Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100273g6gene6619Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02690.1NO16G02690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02690 ID=NO16G02690|Name=NO16G02690|organism=Nannochloropsis oceanica|type=gene|length=1318bp
ATGCGTACCATCTCCTTCCTGGCCCTCGCCACCCCCGCCCTTGCGTTCAT
GACCCCCATGCCTGCCACCGAGCGCAAgtaagtacttctccctgccttcc
tcgttccgtcgaccaatcttggatgccttgcatcttgcttgcgttttccc
ccccctctctttctctattcattcatgtgattgaatatcagatcatccag
gatattgctgcgatagccaccgtgctccgcttgttcacccaagagggatc
gcaacgtcctcatcttcccttctctcccctccccccttctccagCGTCAT
GCGCATGTCCGCCGAGCAGCCCAAGTCGCCCCTCACCGTCAGCAACTTCG
TCAAGGGCTTCGCCACTGCCTCCATGTTTTTCAACTTCGCTACCATGCCC
TTGACTTCCATGCCCGAGGCCGCTATGGCCAAGGCCGGCGAGGGCCCCAA
GCAGTCTGTGTTCGGCCTGGGAGGCGATGCCGCGTCTTCTCCCTTTGTCG
AGGATACACCCACTTACTCTCCTTACTgtgagttgcctccttttcgcttt
catttttagatgtggaagggggggagagagggtggtgcgtgaggatcagc
tctggccattgcggagatggtcgaggttgagaccgactttcttcattttg
gctcgggctgtgacgccgtagcagtctagtctcctcccgaatcctttgta
gtaaggaattggaggctgtgcctgcaataccgtcaaaattacccccctca
cccctcctctctttcctcgtccctccctccctccctccctccctccctcc
ctccctccctccctccctccctcccagCCCCCTACGGCACGGGCGAGAAC
GCCCTGTTCAAGCCGCTCAACGACGAAGACGTGAAGTTCTACACGGCCAA
GGTGACCGAGTCCAAGAAGCGCGTCGATAAGATTGCCAAGTACCTGGAGA
AGAAGCAGgtctgtaaatccctccctcccgccctccctcccgcccttctc
tctttttccaccgtccaaggactcttctccctcagtcctcgactcatcca
tcccctcacacacacatccacacatacaccccccacgcagTGGGAGGAGG
TGCGCACTGAGCTGACCCGCCAGATGTACGACCTGCGCCGTGCAGGCGGG
AAGCTGGCTGAGAACAAGCAGAGCCCCGAGGCGTCCAAGGCCCTCAAGTC
GCTCTTCCAGGACATTGAGGATTTGACCGTAGCCAGCCGACGTAAGCAGA
TCGACTTGTCCCAGGACGCGTACTCCCGAGCTCAGGCGGACTTTGATGCG
TTCTTGAAGGCCATCTAA
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protein sequence of NO16G02690.1

>NO16G02690.1-protein ID=NO16G02690.1-protein|Name=NO16G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MRTISFLALATPALAFMTPMPATERNVMRMSAEQPKSPLTVSNFVKGFAT
ASMFFNFATMPLTSMPEAAMAKAGEGPKQSVFGLGGDAASSPFVEDTPTY
SPYSPYGTGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEE
VRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQ
IDLSQDAYSRAQADFDAFLKAI*
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Synonyms
Publications