NO16G02640, NO16G02640 (gene) Nannochloropsis oceanica

Overview
NameNO16G02640
Unique NameNO16G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5043
Alignment locationchr16:757271..762313 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:757271..762313 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
Homology
[Close]
BLAST of NO16G02640 vs. NCBI_GenBank
Match: EWM23850.1 (hypothetical protein Naga_100865g2 [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 5.700e-42
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0 
Query:    1 MSSCPQCYLGQCRKHKLQDHGARERALLSSRSALQQQLYESLVQPHVDTLKTNIKETAAAEEGQGRYREEVGKDRERAQRQKSKFSKQQILKAQSLGGLRGDLLKTMLDNDSDLERG 118
            MSSCPQCY+GQCRKHKLQDHGARERALLSSRS LQ++LYESLVQPHVDTLKT  K TA AE G  RYR+ VGKDRE+AQRQKSKFS++Q+ KAQ+LGGLRGDLL+TML NDSD E G
Sbjct:    1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSELQRRLYESLVQPHVDTLKTTKKATAEAEAGHCRYRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLANDSDFEDG 117
[Close]
BLAST of NO16G02640 vs. NCBI_GenBank
Match: EWM23851.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 7.000e-24
Identity = 90/266 (33.83%), Postives = 118/266 (44.36%), Query Frame = 0 
Query:  931 MPSPSPGPSLSAFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRARRVSQGEQKRVEAVYKALRRSSPPSLPSSLASSSL----RPDSYTLTAMLRWLQQVSRAAHXXXXXXXXXXXXXXXXXXXXXXXXXXMGAKEQENGXXXXXXXXXXXXXXXXXXXXAHREMYQIVLKDIETWLPPERRSSQLYTALLGAAAAEEDWERVEEAYEEARRQLKQGKMPSRAYAFVETCYRKIKSTK-ELKEGRREG 1192
            MPSP+P PSL AFN                                             SR RRVS+ E++RV AVY ALR    PS  S+     +    RPD YT+TA+LRW+QQ  R                              G ++ E G                      + +Y+ VL+DI  W+P   RSS LYTAL+GAAA+ +DW  V++AY EA+  L  G MP+RAYAFVETCY+K++  + + K G  EG
Sbjct:    1 MPSPAPAPSLPAFNLLLHLHAKQGDTLGAERVLGQVLQHGLLPTLLSYNTLLHAYVRRASRTRRVSERERRRVRAVYDALRTHCLPSPSSTPGEPDMGQKDRPDVYTMTALLRWVQQAGREGKG--------------------------GKEKNEEG--------SGVGEGNMNYEDRDQLLYRQVLEDIAAWVPLTARSSHLYTALMGAAASRKDWTTVDDAYREAKEHLLAGTMPARAYAFVETCYQKMQGWRLKPKGGSEEG 232
[Close]
BLAST of NO16G02640 vs. NCBI_GenBank
Match: CBN77261.1 (hypothetical protein Esi_0044_0015 [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 2.400e-8
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0 
Query:    1 MSSCPQCYLGQCRKHKLQDHGARERALLSSR---SALQQQLYESLVQPHVDTLKTNIKETAAAEEGQGRYREEVGKDRERAQRQKSKFSKQQILKAQSLGGLRGDLLKTMLDN 111
            MS CP C++GQC++HKLQDHG RE  L S      A QQ+L++ +V   +D L+   +   A +  Q  Y+  V K R+RA+R+ +K S +Q  +A +   L G L+ TMLD+
Sbjct:    1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGD--QEIYKASVSKARDRAERRGNKLSSKQQRQA-AKSRLGGHLVHTMLDS 110
The following BLAST results are available for this feature:
BLAST of NO16G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23850.15.700e-4280.34hypothetical protein Naga_100865g2 [Nannochloropsi... [more]
EWM23851.17.000e-2433.83Pentatricopeptide repeat containing protein [Nanno... [more]
CBN77261.12.400e-840.71hypothetical protein Esi_0044_0015 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL151nonsL151Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003272NSK003272Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02640.1NO16G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649381gene_6160Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100464g1gene6609Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02640.1NO16G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02640 ID=NO16G02640|Name=NO16G02640|organism=Nannochloropsis oceanica|type=gene|length=5043bp
ATGTCATCTTGTCCGCAATGCTACCTGGGTCAATGCCGTAAGCACAAGgt
ccgtcccctctctctatcccgattctccctcccccactccctcccacgca
cccccagcttctttcacatcctccttctctcctgaccaccctcccgagca
tgctcattgtcggtatcacgcttacagcaagatgtatatgttgctagtac
cgtactccttcatctcttcgttctacgcatccccactccttctaaccctc
ccttcccccctcatcatctccgcccaagCTCCAAGACCACGGCGCCCGAG
AACGCGCCCTCCTTTCCTCCCGCTCCGCATTGCAGCAACAGTTGTATGAA
TCCCTCGTACAGCCCCACGTGGACACCTTGAAGACAAATATAAAAGAGAC
CGCAGCAGCGGAGGAGGGCCAGGGGAGGTATAGAGAGGAGGTAGGGAAGG
ACAGGGAGAGGGCACAAAGACAGAAGAGCAAGTTCAGCAAGCAGCAAATA
TTGAAGgtaggcagggagaaagaaagagggtggagggggaagggagaagt
ggctctgatttcatttctgcagattcttaacacacaccaacacacccata
cccacacacacacacacacacacacacacacttccctcactctctctccc
caacatgcatgcccagGCCCAGTCTCTCGGCGGATTACGGGGGGACCTCC
TGAAGACCATGCTCGATAACGACAGCGACTTGGAGAGAGGAGAAGATGAT
GAAGACGACGATGGGGAGGATGGGGGAAGGGAACGgtagttggtgcaggg
gggggaggggggagggagggagggagggagggcgtgctggcattctagac
gaattatgacttggcagcgtacatactcacgattcaacatctaatccttg
ccctcccttcctcccccctcttctcttctctctcgcagGAAAAAATCAAA
GAAGCGTAAGAAGGAAAGCTCTAGAAAGGAGTCGAAGAAAGAAAAGAAGC
GGAGAAAGAAGGACGATGACGGCAAAAAAAAACGAAAACAGAAAGAGAAA
AAGGGGAAGCGCAGCAGTAGTGGCAGCAGCAGTAAGCGAAATAAGGAGAA
GGAGACGGGGAAGGAGAAGGACCGGAGGGCACGCAAACGGAAGCGTGAGG
ATGATGAAAAGGAGGAGGAACAGGCGCGGGAAAATCCAGAAGCAGCTGCC
GTCCGTCCCTCCTCTTCTCCTGGTCCATGTGGTGGCAGTGAGAGTCTGAG
CGACGGAAATGGCATCTCGTCTACCATATTGCCAAGCTCACCACCTTCTC
CCACCTCCGCTGCTTCCTCGTCCTCGTCCTCGTCCTCGTCATCGGAAGCA
GGGGGGAGTGAGAGCGAAGGGGAAGGCAGGGgtgagggagaagggtggtc
ggtacagaagaaaggaggaaacaacggtgatggtggagggaatgtgaaag
gaggagaggaggcaaataaatgagaggaaggcagggggatggaaatgact
gaaagtaattggtgaaaaagtacggtccgaccttcagagaggaatttaaa
gttacttcaaagctgtaatttttgcctgaagcagctaacgcacgtgcagg
agcatgttgctgaattttatcggaactcctaattctttttctgttgtctc
ggaactcctagctatggattcatattatcgtttactttttgggaaaatgg
gggaggtaaaggtttatgtttagtcattattaattatatcgtggctatcc
tacaaccctagaactatcccatgcaaccttacgtcacaggattacgtacg
aggggaagacttccaacaataagatgtttcctttacttccccttattttg
tcccgagttggtgaccggcttttgacaggtttttcacatgcagaggcttt
agcagttgaagggagggaagatacaacgcaacggcttccggagcgcgctg
accgcatgacccacaatgtgcacatagacagGAAAGAGCAACCTGTTGCC
CGCGAGGCTTGCGTTCCAGGCTTTTCGTACTTTCCTCGCGTCGTCGTCTT
CGTCATCGTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCGCGTAGAG
CCCAAGCCCACCAACGCTACGACGACCATGTCCAAGCCACCGCCACCACC
ATCACCATCTACAGCGCCACATCCACCGAGGCCAATTCAGCGGTCATACT
CGCGTGCCTTTGTCGTAATGGGGAGCCTCTTGCTCACTGCGCCTGCCCAG
GCCTTTTTACTCCCCTCCCCCTCCTCCCTCGTCCTGCCCTCCTTCCCACC
ATCATCCTCACCAACACCAGCCTTGCGGAGAAGAGACCAAATTATCACCA
TCACCACCACCACCACAAGTGGCTTCACAAGAAATCGAAAAAGAAGACAC
CCATCTTCACCTTCCATCATCCTCCAGGCCGTTACCTCGCCCTCCTCCAC
TCTCTCCACTACTTCTCCTCCTTCTTCCACTTCGGACTGGTCGCGCCTCG
GCCCCGAGTACGCCTCCCTCCTTCAAAACCTCCGAAAAGCCTCTCTGGCA
GGGAACGTCGAACTGGCCACCGCAACAATTGCTTCTCTGGACGAACAAAG
CGTGCCATTGGACCTACTGGCCCTCACCCATTACATGCAGGCCTTCGCCA
CCCGCCGCGATGTCGACGGGGCTGAAGCCGTCTTTGCGCGCATGAAGGCC
CAAGGCCTCTCACCTGACATCGTCCCTTATTCTATCCTATTAAATCTCCA
CGCCAACCGAGGAGACGTGGCGAAGGCCGAGGAGACTTTTAAAGAGATGA
AAGAGGTCGGCAATTTACCGAGGAGCACCCGTGCGTATACGGCCCTGATG
AAGGCCTATATGAAAAGAAAGGACACAGAGGGGGCAGAGGACGTATTGTT
TCGGATGGCAGCAGCAGGAGAGACGCCCGATGTTCACGCGTACACCATCT
TGATGAGGGCGTACGGAAAGAGAGGGGACATCCAAGGCGCAGAAGACGTT
ATGAGAAGGGTGTTGCTGGCGGTGGAGGGAGGGAAGGAGGGAGGGAGGGA
GGGAGGGGGAATGGTCTTGGATGTGGTGATTTTCAATGCACTTTTGAGAG
TGTATGTGACAGGGAAGATGCCAATCGTGGTGGGGGGGGGAAGGAGGGAA
GGAGGGAGGGAGAGGGGGAGGGGGTTGGAAGAGGGTGTGCAGAGTGTGTT
GGCGCGTATGAAAGAGCAGGGACTGGAGCCGGACGAAACTACCGAGGCCT
TGCTGGCGATGACAAGGGGGGAGAGGGCCAAGCGGATGAAGAGGCAGCAG
CAGTTGCTGAAGGGGATGACGATCATCAACAAGGGAAGTGGGATAGGCGG
AGGAAGAGGAGTACTGCCCTCCTCCTTGGCGTCGGAAGCAGCAGCAGCAG
CAGCAGCAGCAGAAGGAAGAGGAGGAGGAAGAAGTGGGAGGGGGCAAGTG
GTAGCAGGAGGAGGCGACGTGGCGTCTGAAGCAGCAGCGGCAGCAGCATC
TCCCGAAGAGATGGTGCGGCATTTTACCGCCAAGTTGCAGAAGGAGAAGG
AGGCCCGACAAGAGCAACAGCAACCACTACAACAACAACAACAGCAGCAA
CAACTACATCAAGAACAAGAACAAGAGCAACAGCCCTCTGTATCTTCGTC
TGTTGTACTGCCTTCCTCCTTCCCACCATCACCGCCATCAGCAGCAGCAC
GCGTCACCGGAGAAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGGAGGA
AGTGGAGCCCTCTCGCCCGAAGCGCTCGCCCGCGTCCACGTCAAGTCCCT
CGTGGCCGCCCTCACGGCGCAACAGCGGGCACTCCTTCCCTCCCTCCTCA
CCGATGAAGAGCCCTATCTCGTCGTCCTCCGGGCCTGCGTGGAAGCCGGC
GACGACGTCACGGCCCGCAGCGTCCTGCAACTGATGCCCTCGCCATCCCC
TGGGCCCTCCCTCTCGGCCTTCAACCTTCTCCTCCACCTCCACGCTAAGA
AGGGAGAGACCCTAAGTGCCGAGCGTGTGCTGGCGCAGATTGCTCAGAAC
GGCCTCTCCCCCTCCCTCTCGTCCTATAACACCCTCCTCCATGCCTATGT
CCGACGGGCATCCCGCGCCCGGAGAGTCAGCCAAGGAGAGCAGAAGCGGG
TCGAGGCCGTGTACAAGGCTTTACGGAGGTCGTCTCCCCCTTCCCTCCCT
TCCTCCCTCGCGTCCTCGTCATTGAGGCCGGACTCCTACACCCTGACGGC
GATGTTGCGGTGGTTGCAGCAAGTCAGCCGGGCCGCGCACAGTGGAGGGC
AAGAAAGGGAGGGTGGAGGTGCCTTCATGATGGAGGAGGAGGAGGATGAG
GGATGGATGCTGGGAGGGATGGGGGCGAAGGAACAGGAGAATGGCGGGAC
GGGTGGTGGTGCTGGTGAAGGAGGAGGGAGGGGAGGGGGAAGGGAGGGAG
GAACCGCCCATCGCGAGATGTACCAGATCGTCTTGAAAGACATCGAGACG
TGGCTACCACCCGAGCGAAGGTCCAGTCAGCTCTACACGGCCTTGTTGGG
CGCAGCGGCGGCGGAGGAGGATTGGGAGAGAGTGGAGGAGGCGTACGAAG
AAGCGCGTCGACAGCTGAAGCAGGGAAAGATGCCTAGTCGCGCCTATGCA
TTCGTGGAGACTTGTTACAGGAAAATCAAGTCGACGAAGGAATTGAAGGA
GGGAAGGAGGGAGGGAGGGAAGGAGGGAAAGAGGGAGGGTGGGGTGGTCC
CGAGTCGGCCGGCGGTGGCGGGAGCCCGACGTGTGTAAATAGCAATAAAT
TAGGGAAGATAGTCTCACTGGAATCAGGCAAGAGGAAAGCGTAGATTGAT
GAGTGAGATAGTAGGAGGAGATAATAGATTGTAGAAAGAGCAACCGATTG
AGCCTCCGACTTAAAATTGCCATAAAAAATAATTTGAATCAAAGAACAAC
GGAAAGAGCTTATCGTAACAGTGCAGAAATATCCCCAAAACGCGAAAACT
TCGCGCGTCAACACGTGTACTGAAGCAAAAAGAGAGACAGGAA
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protein sequence of NO16G02640.1

>NO16G02640.1-protein ID=NO16G02640.1-protein|Name=NO16G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1215bp
MSSCPQCYLGQCRKHKLQDHGARERALLSSRSALQQQLYESLVQPHVDTL
KTNIKETAAAEEGQGRYREEVGKDRERAQRQKSKFSKQQILKAQSLGGLR
GDLLKTMLDNDSDLERGEDDEDDDGEDGGRERKKSKKRKKESSRKESKKE
KKRRKKDDDGKKKRKQKEKKGKRSSSGSSSKRNKEKETGKEKDRRARKRK
REDDEKEEEQARENPEAAAVRPSSSPGPCGGSESLSDGNGISSTILPSSP
PSPTSAASSSSSSSSSSEAGGSESEGEGRGKSNLLPARLAFQAFRTFLAS
SSSSSLAAAAAAAAAARVEPKPTNATTTMSKPPPPPSPSTAPHPPRPIQR
SYSRAFVVMGSLLLTAPAQAFLLPSPSSLVLPSFPPSSSPTPALRRRDQI
ITITTTTTSGFTRNRKRRHPSSPSIILQAVTSPSSTLSTTSPPSSTSDWS
RLGPEYASLLQNLRKASLAGNVELATATIASLDEQSVPLDLLALTHYMQA
FATRRDVDGAEAVFARMKAQGLSPDIVPYSILLNLHANRGDVAKAEETFK
EMKEVGNLPRSTRAYTALMKAYMKRKDTEGAEDVLFRMAAAGETPDVHAY
TILMRAYGKRGDIQGAEDVMRRVLLAVEGGKEGGREGGGMVLDVVIFNAL
LRVYVTGKMPIVVGGGRREGGRERGRGLEEGVQSVLARMKEQGLEPDETT
EALLAMTRGERAKRMKRQQQLLKGMTIINKGSGIGGGRGVLPSSLASEAA
AAAAAAEGRGGGRSGRGQVVAGGGDVASEAAAAAASPEEMVRHFTAKLQK
EKEARQEQQQPLQQQQQQQQLHQEQEQEQQPSVSSSVVLPSSFPPSPPSA
AARVTGEGEGGEGGEGGGGSGALSPEALARVHVKSLVAALTAQQRALLPS
LLTDEEPYLVVLRACVEAGDDVTARSVLQLMPSPSPGPSLSAFNLLLHLH
AKKGETLSAERVLAQIAQNGLSPSLSSYNTLLHAYVRRASRARRVSQGEQ
KRVEAVYKALRRSSPPSLPSSLASSSLRPDSYTLTAMLRWLQQVSRAAHS
GGQEREGGGAFMMEEEEDEGWMLGGMGAKEQENGGTGGGAGEGGGRGGGR
EGGTAHREMYQIVLKDIETWLPPERRSSQLYTALLGAAAAEEDWERVEEA
YEEARRQLKQGKMPSRAYAFVETCYRKIKSTKELKEGRREGGKEGKREGG
VVPSRPAVAGARRV*
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Synonyms
Publications