NO16G02610, NO16G02610 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO16G02610 vs. NCBI_GenBank
Match: EWM23853.1 (hypothetical protein Naga_100464g6 [Nannochloropsis gaditana]) HSP 1 Score: 253.8 bits (647), Expect = 7.600e-64 Identity = 149/354 (42.09%), Postives = 189/354 (53.39%), Query Frame = 0 Query: 6 LLSLALTVATCTTSAASLLRGQPTDRQLETVLDFPGVSINVNSNGETIVETPWGMVITGENGTSVHGPRPTTLGNLSCDTLGAWDTDDEPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTPCGNVWTAGVVAESLHCTP-PGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRDPAPRQVQVEAPGA---MGVDMAADAASSDAASTSKTEFANSLKSNDDKAXXXXXXXXXXXXXXXXXXXXXPTYPADFPGLRMGCIKDKKSEEFCAIKRASI------AAAASPACDFYLSCCYAQYARMFSAIPLTFVKEVEKACPGSTAFLEGDLCT 350 LLS L V + + A LRG+ + R+L TV+D P +S+NVN +G V TPWG V T NGTSVHG PT++GN++C LG WDT EP+C ALPAF+ +T TF KP+ R+ MD FC TPCG+ WT V A SL C+P G G + GGVVV+V VQVE PG G A +++ A T++T A + PT+P D+PGLR+GCIKD K EEFCA+KRA++ A PACDFYLSCCYAQY + F ++P FV+EVE ACPGST FL+G +CT Sbjct: 45 LLSCTLLVVSPRFNDA-FLRGEMSPRELATVVDLPSISVNVNEDGGVSVSTPWGSVNTDSNGTSVHGFTPTSIGNVTCANLGPWDTAAEPTCETALPAFYESTTTFAGTSKPKIRKITMDTFCTTPCGDTWTRAVFAHSLRCSPGVGGNGS-----------AAGGVVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVQVEFPGGRVHAGNGSVAVTSAASPAQTARTSAATT--------------------------SGGPTFPVDYPGLRLGCIKDPKDEEFCAVKRAAVPGVGGDAEDGGPACDFYLSCCYAQYVQTFGSVPTEFVEEVEAACPGSTLFLQGSVCT 360
BLAST of NO16G02610 vs. NCBI_GenBank
Match: XP_005853779.1 (hypothetical protein NGA_0459000 [Nannochloropsis gaditana CCMP526] >EKU22579.1 hypothetical protein NGA_0459000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 252.7 bits (644), Expect = 1.700e-63 Identity = 142/329 (43.16%), Postives = 178/329 (54.10%), Query Frame = 0 Query: 31 RQLETVLDFPGVSINVNSNGETIVETPWGMVITGENGTSVHGPRPTTLGNLSCDTLGAWDTDDEPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTPCGNVWTAGVVAESLHCTP-PGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRDPAPRQVQVEAPGA---MGVDMAADAASSDAASTSKTEFANSLKSNDDKAXXXXXXXXXXXXXXXXXXXXXPTYPADFPGLRMGCIKDKKSEEFCAIKRASI------AAAASPACDFYLSCCYAQYARMFSAIPLTFVKEVEKACPGSTAFLEGDLCT 350 R+L TV+D P +S+NVN +G V TPWG V T NGTSVHG PT++GN++C LG WDT EP+C ALPAF+ +T TF KP+ R+ MD FC TPCG+ WT V A SL C+P G G + GGVVV+V VQVE PG G A A+++ A T++T A + PT+P D+PGLR+GCIKD K EEFCA+KRA++ A PACDFYLSCCYAQY + F ++P FV+EVE ACPGSTAFL+G +CT Sbjct: 4 RELATVVDLPSISVNVNEDGGVSVSTPWGSVNTDGNGTSVHGFTPTSIGNVTCANLGPWDTAAEPTCETALPAFYESTTTFAGTSKPKIRKITMDTFCTTPCGDTWTRAVFAHSLRCSPGVGGNGS-----------AAGGVVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQVEFPGGRVHAGNGSVAVASAASPAQTARTPAATT--------------------------SGGPTFPVDYPGLRLGCIKDPKDEEFCAVKRAAVPGVGGDAEDGGPACDFYLSCCYAQYVQTFGSVPTEFVEEVEAACPGSTAFLQGSVCT 295
BLAST of NO16G02610 vs. NCBI_GenBank
Match: EWM22917.1 (hypothetical protein Naga_101175g1 [Nannochloropsis gaditana]) HSP 1 Score: 78.6 bits (192), Expect = 4.400e-11 Identity = 75/288 (26.04%), Postives = 109/288 (37.85%), Query Frame = 0 Query: 78 LGNLSCDTLGAWDTDD-----EPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTP------CGNVWTAGVVAESLHCTPPGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRDPAPRQVQVEAPGAMGVDMAADAASSDAASTSKTEFANSLKSNDDKAXXXXXXXXXXXXXXXXXXXXXPTYPADFPGLRMGCIKDKKSEEFCAIKRASIAA----AASPACDFYLSCCYAQYARM-FSAIPLTFVKEVEKACPGSTAFLEGDLCT 350 LG ++C +LG DTD+ +P+CT L ++ F G ++ K M++FC P CG T + AE L C P + AP + ++ + T +KA +P D+PGLR+GCI D + +CA+KRA++ + ACDF+LSCCYAQY RM F +P V+E+E ACPG+ A L G +CT Sbjct: 138 LGGVTCASLG--DTDNYNAVQDPTCTAFLAQYYEHARMFA-GFASDEQGKFMEEFCRPPPASSLSCGQSLTMVLEAERLGCALPPPRXXXXXXXXXXXXXXXXXXXXXTRQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGAPEPLDTTPVTIQTANGPVAAPPTTGGQKEAMAVEKAAAKKDETPQTGRKNVTEGMNSKAFPFDYPGLRLGCITD-PTGGYCAMKRAAVPSEPLGRTETACDFFLSCCYAQYDRMHFDGLPP--VEEIETACPGAKAALRGPVCT 419 The following BLAST results are available for this feature:
BLAST of NO16G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G02610 ID=NO16G02610|Name=NO16G02610|organism=Nannochloropsis oceanica|type=gene|length=1050bpback to top protein sequence of NO16G02610.1 >NO16G02610.1-protein ID=NO16G02610.1-protein|Name=NO16G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bpback to top Synonyms
Publications
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