NO16G02610, NO16G02610 (gene) Nannochloropsis oceanica

Overview
NameNO16G02610
Unique NameNO16G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr16:752795..753844 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:752795..753844 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G02610 vs. NCBI_GenBank
Match: EWM23853.1 (hypothetical protein Naga_100464g6 [Nannochloropsis gaditana])

HSP 1 Score: 253.8 bits (647), Expect = 7.600e-64
Identity = 149/354 (42.09%), Postives = 189/354 (53.39%), Query Frame = 0
Query:    6 LLSLALTVATCTTSAASLLRGQPTDRQLETVLDFPGVSINVNSNGETIVETPWGMVITGENGTSVHGPRPTTLGNLSCDTLGAWDTDDEPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTPCGNVWTAGVVAESLHCTP-PGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRDPAPRQVQVEAPGA---MGVDMAADAASSDAASTSKTEFANSLKSNDDKAXXXXXXXXXXXXXXXXXXXXXPTYPADFPGLRMGCIKDKKSEEFCAIKRASI------AAAASPACDFYLSCCYAQYARMFSAIPLTFVKEVEKACPGSTAFLEGDLCT 350
            LLS  L V +   + A  LRG+ + R+L TV+D P +S+NVN +G   V TPWG V T  NGTSVHG  PT++GN++C  LG WDT  EP+C  ALPAF+ +T TF    KP+ R+  MD FC TPCG+ WT  V A SL C+P  G  G            + GGVVV+V                              VQVE PG     G    A  +++  A T++T  A +                             PT+P D+PGLR+GCIKD K EEFCA+KRA++      A    PACDFYLSCCYAQY + F ++P  FV+EVE ACPGST FL+G +CT
Sbjct:   45 LLSCTLLVVSPRFNDA-FLRGEMSPRELATVVDLPSISVNVNEDGGVSVSTPWGSVNTDSNGTSVHGFTPTSIGNVTCANLGPWDTAAEPTCETALPAFYESTTTFAGTSKPKIRKITMDTFCTTPCGDTWTRAVFAHSLRCSPGVGGNGS-----------AAGGVVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVQVEFPGGRVHAGNGSVAVTSAASPAQTARTSAATT--------------------------SGGPTFPVDYPGLRLGCIKDPKDEEFCAVKRAAVPGVGGDAEDGGPACDFYLSCCYAQYVQTFGSVPTEFVEEVEAACPGSTLFLQGSVCT 360          
BLAST of NO16G02610 vs. NCBI_GenBank
Match: XP_005853779.1 (hypothetical protein NGA_0459000 [Nannochloropsis gaditana CCMP526] >EKU22579.1 hypothetical protein NGA_0459000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 252.7 bits (644), Expect = 1.700e-63
Identity = 142/329 (43.16%), Postives = 178/329 (54.10%), Query Frame = 0
Query:   31 RQLETVLDFPGVSINVNSNGETIVETPWGMVITGENGTSVHGPRPTTLGNLSCDTLGAWDTDDEPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTPCGNVWTAGVVAESLHCTP-PGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRDPAPRQVQVEAPGA---MGVDMAADAASSDAASTSKTEFANSLKSNDDKAXXXXXXXXXXXXXXXXXXXXXPTYPADFPGLRMGCIKDKKSEEFCAIKRASI------AAAASPACDFYLSCCYAQYARMFSAIPLTFVKEVEKACPGSTAFLEGDLCT 350
            R+L TV+D P +S+NVN +G   V TPWG V T  NGTSVHG  PT++GN++C  LG WDT  EP+C  ALPAF+ +T TF    KP+ R+  MD FC TPCG+ WT  V A SL C+P  G  G            + GGVVV+V                              VQVE PG     G    A A+++  A T++T  A +                             PT+P D+PGLR+GCIKD K EEFCA+KRA++      A    PACDFYLSCCYAQY + F ++P  FV+EVE ACPGSTAFL+G +CT
Sbjct:    4 RELATVVDLPSISVNVNEDGGVSVSTPWGSVNTDGNGTSVHGFTPTSIGNVTCANLGPWDTAAEPTCETALPAFYESTTTFAGTSKPKIRKITMDTFCTTPCGDTWTRAVFAHSLRCSPGVGGNGS-----------AAGGVVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQVEFPGGRVHAGNGSVAVASAASPAQTARTPAATT--------------------------SGGPTFPVDYPGLRLGCIKDPKDEEFCAVKRAAVPGVGGDAEDGGPACDFYLSCCYAQYVQTFGSVPTEFVEEVEAACPGSTAFLQGSVCT 295          
BLAST of NO16G02610 vs. NCBI_GenBank
Match: EWM22917.1 (hypothetical protein Naga_101175g1 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 4.400e-11
Identity = 75/288 (26.04%), Postives = 109/288 (37.85%), Query Frame = 0
Query:   78 LGNLSCDTLGAWDTDD-----EPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTP------CGNVWTAGVVAESLHCTPPGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRDPAPRQVQVEAPGAMGVDMAADAASSDAASTSKTEFANSLKSNDDKAXXXXXXXXXXXXXXXXXXXXXPTYPADFPGLRMGCIKDKKSEEFCAIKRASIAA----AASPACDFYLSCCYAQYARM-FSAIPLTFVKEVEKACPGSTAFLEGDLCT 350
            LG ++C +LG  DTD+     +P+CT  L  ++     F  G    ++ K M++FC  P      CG   T  + AE L C  P  +                                                        AP  +         ++   +   T          +KA                       +P D+PGLR+GCI D  +  +CA+KRA++ +        ACDF+LSCCYAQY RM F  +P   V+E+E ACPG+ A L G +CT
Sbjct:  138 LGGVTCASLG--DTDNYNAVQDPTCTAFLAQYYEHARMFA-GFASDEQGKFMEEFCRPPPASSLSCGQSLTMVLEAERLGCALPPPRXXXXXXXXXXXXXXXXXXXXXTRQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGAPEPLDTTPVTIQTANGPVAAPPTTGGQKEAMAVEKAAAKKDETPQTGRKNVTEGMNSKAFPFDYPGLRLGCITD-PTGGYCAMKRAAVPSEPLGRTETACDFFLSCCYAQYDRMHFDGLPP--VEEIETACPGAKAALRGPVCT 419          
The following BLAST results are available for this feature:
BLAST of NO16G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23853.17.600e-6442.09hypothetical protein Naga_100464g6 [Nannochloropsi... [more]
XP_005853779.11.700e-6343.16hypothetical protein NGA_0459000 [Nannochloropsis ... [more]
EWM22917.14.400e-1126.04hypothetical protein Naga_101175g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL151nonsL151Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003268NSK003268Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02610.1NO16G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593960gene_6157Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100464g6gene6607Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02610.1NO16G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02610 ID=NO16G02610|Name=NO16G02610|organism=Nannochloropsis oceanica|type=gene|length=1050bp
ATGCCCGCCTTCGTTCTTTTGAGTCTCGCCCTAACCGTCGCCACTTGTAC
CACCAGCGCCGCCTCCCTCCTCCGCGGCCAGCCCACCGACCGGCAGCTTG
AAACGGTCTTAGACTTTCCGGGGGTCAGCATTAATGTGAATAGCAACGGT
GAGACTATTGTGGAGACGCCCTGGGGCATGGTCATCACGGGAGAAAATGG
TACGAGTGTGCATGGACCTAGGCCCACGACCCTGGGCAACCTGAGCTGTG
ACACGCTGGGTGCGTGGGACACGGACGACGAGCCTTCATGCACCAAGGCG
TTGCCTGCCTTCTTTAATGCCACTGCTACCTTTGGTCAGGGTGACAAGCC
CCGTGATCGAAGGAAGGTGATGGATGACTTTTGTGGGACGCCGTGCGGGA
ATGTTTGGACGGCGGGGGTGGTGGCAGAGAGTCTGCACTGCACTCCTCCA
GGCTCCCAGGGCCAGGAGCAGGTTGATAGCAACAATATTGTGGACGTGTC
TGACGGTGGAGTGGTGGTCAATGTACCGGGCGTGACGGTCAATACCTCGC
GAGGTGGAGGGATGAACGTACAGGCGCCTGGGACGTCCGTGATCCGAGAC
CCTGCCCCTCGTCAGGTCCAGGTGGAGGCCCCGGGGGCCATGGGGGTCGA
CATGGCTGCTGATGCGGCTTCCTCTGATGCTGCCTCCACATCCAAGACGG
AGTTTGCCAATAGCTTGAAGAGCAACGACGACAAGGCTACTAACACCAGT
ACCAGCACCAGCACCAACACCACCAGCACCAGCACCAGCATCAAGAGCAA
ACCCACCTACCCCGCCGACTTCCCGGGCCTGCGCATGGGCTGCATCAAGG
ACAAGAAGAGCGAGGAGTTCTGCGCCATCAAAAGGGCATCCATAGCAGCC
GCTGCCTCGCCGGCGTGTGACTTTTATTTGTCGTGTTGCTACGCCCAGTA
CGCGAGGATGTTTAGTGCCATTCCCTTGACGTTCGTGAAGGAGGTGGAGA
AGGCATGTCCCGGCTCCACGGCCTTCCTGGAGGGAGACTTGTGCACATAG
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protein sequence of NO16G02610.1

>NO16G02610.1-protein ID=NO16G02610.1-protein|Name=NO16G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MPAFVLLSLALTVATCTTSAASLLRGQPTDRQLETVLDFPGVSINVNSNG
ETIVETPWGMVITGENGTSVHGPRPTTLGNLSCDTLGAWDTDDEPSCTKA
LPAFFNATATFGQGDKPRDRRKVMDDFCGTPCGNVWTAGVVAESLHCTPP
GSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMNVQAPGTSVIRD
PAPRQVQVEAPGAMGVDMAADAASSDAASTSKTEFANSLKSNDDKATNTS
TSTSTNTTSTSTSIKSKPTYPADFPGLRMGCIKDKKSEEFCAIKRASIAA
AASPACDFYLSCCYAQYARMFSAIPLTFVKEVEKACPGSTAFLEGDLCT*
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Synonyms
Publications