NO16G02410, NO16G02410 (gene) Nannochloropsis oceanica

Overview
NameNO16G02410
Unique NameNO16G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length788
Alignment locationchr16:692600..693387 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:692600..693387 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G02410 vs. NCBI_GenBank
Match: EWM23926.1 (hypothetical protein Naga_100082g21 [Nannochloropsis gaditana])

HSP 1 Score: 167.2 bits (422), Expect = 4.500e-38
Identity = 86/98 (87.76%), Postives = 94/98 (95.92%), Query Frame = 0 
Query:   72 ARASKAQTAHRPEAVAHAADIKSLRILMEEVDELQVELRAATELPKQISIKSAIKKKASGREMTELLKRLELKGQPVWGMSVSERDLVKEARRLFNSC 170
            ARA+K QT HRPEAVAHAADIKSLR+LMEEV+EL+V+LR+A ELPKQISIKSAIKKKASGR+MTELLKRLELKGQPVWG+SVSERDLVKEARR FNSC
Sbjct:   81 ARANKTQTKHRPEAVAHAADIKSLRMLMEEVEELEVQLRSADELPKQISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 178
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BLAST of NO16G02410 vs. NCBI_GenBank
Match: CBJ28678.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 5.100e-13
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 0 
Query:   78 QTAHRPEAVAHAADIKSLRILMEEVDELQVEL-RAATELP-KQISIKSAIKKKASGREMTELLKRLELKGQPVWGMSVSERDLVKEARRLFNSC 170
            Q  HRPEA+A   DI+ LR  M+ V E+++EL R   ++  + I +KSAIKK+ S   M ELL RL++K QPVWG++  ER+LVK AR   NSC
Sbjct:   63 QAHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156
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BLAST of NO16G02410 vs. NCBI_GenBank
Match: GAX23939.1 (hypothetical protein FisN_20Hh147 [Fistulifera solaris])

HSP 1 Score: 63.2 bits (152), Expect = 9.200e-7
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 0 
Query:   82 RPEAVAHAADIKSLRILMEEVDELQVELRA-ATELPKQISIKSAIKKKASGREMTELLKRLELKGQPVWGMSVSERDLVKEARRLFNSC 170
            R   +A + D++ +  +M  V+ L+ +LR  A    K I +KSAIKK  +   + E L RLEL+GQPVWG+S  ER+++  AR   N+C
Sbjct:   67 RVRMIALSQDVEKIEHVMTAVESLESQLRENAGVNGKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 155
The following BLAST results are available for this feature:
BLAST of NO16G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23926.14.500e-3887.76hypothetical protein Naga_100082g21 [Nannochlorops... [more]
CBJ28678.15.100e-1350.00conserved unknown protein [Ectocarpus siliculosus][more]
GAX23939.19.200e-740.45hypothetical protein FisN_20Hh147 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003175NSK003175Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02410.1NO16G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566929gene_6136Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100082g21gene6529Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02410.1NO16G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02410 ID=NO16G02410|Name=NO16G02410|organism=Nannochloropsis oceanica|type=gene|length=788bp
ACAGATACCACAAACGCAAAAGACACCGAGCATTACACCATGCTATTTAC
AGCATTGATGAAGAGGACAGCAGGCCTGGCGGCGGCGTCATCGGCGGGAT
CTGCAAATCGTTTTCCCATGCTCACGCTCGGTGCCTTACGTTGTCTTTCA
GACAGCAGTGGAGGCGGGGACATGGGTGGCGGGGGTGGCAGTATTACGTA
CAGCGGTGGGCAAGCGACGTCCGGCCAGGGAGGTTTTTATGGGGCGGGTG
GGGCGCGGGCAAGCAAGGCGCAGACAGCACACCGTCCGGAAGCTGTCGCG
CACGCCGCGGACATCAAGTCACTGCGCATCCTCATGGAGGAAGTGGATGA
GCTACAGGTGGAGTTGCGGGCTGCTACCGAACTCCCCAAGCAGATCTCTA
TTAAGTCGGCTATCAAGAAGAAGGCATCGGGGAGGGAAATGACGGAGCTT
TTGAAGCGGTTAGAACTGAAGGGGCAGCCCGTATGGGGTATGAGTGTGAG
CGAACGCGACCTGGTCAAGGAGGCCCGTCGCCTGTTCAATTCGTGTTAAC
AGCAAATAAGAGTACTCACTTAACGAGACCGCGGCGCCGTTTCCTAGTCT
CAATTTTGACCATAATTCAATGTGAGAGCCTGTCTTCGTTTGAGGATCTG
TTTCCATGTGTGTTGTGTGTGAAGGAGAGAATGAAGTGACGCTCTTACTG
AATGGGGTTGGATGACCGGTGTCGATAGAGGGGGAAAGGTTTGGAAAGGT
GCAGGAATGGAAATAAAATGATGCGTTAGACAACAGGA
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protein sequence of NO16G02410.1

>NO16G02410.1-protein ID=NO16G02410.1-protein|Name=NO16G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLFTALMKRTAGLAAASSAGSANRFPMLTLGALRCLSDSSGGGDMGGGGG
SITYSGGQATSGQGGFYGAGGARASKAQTAHRPEAVAHAADIKSLRILME
EVDELQVELRAATELPKQISIKSAIKKKASGREMTELLKRLELKGQPVWG
MSVSERDLVKEARRLFNSC*
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Synonyms
Publications