NO16G02130, NO16G02130 (gene) Nannochloropsis oceanica

Overview
NameNO16G02130
Unique NameNO16G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1132
Alignment locationchr16:622780..623911 +

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Properties
Property NameValue
DescriptionBeta-hydroxyacyl-acp dehydratase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:622780..623911 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom
IPR013114FabA_FabZ
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO16G02130 vs. NCBI_GenBank
Match: EWM23904.1 (beta-hydroxyacyl-acp dehydratase precursor [Nannochloropsis gaditana])

HSP 1 Score: 359.8 bits (922), Expect = 5.700e-96
Identity = 181/202 (89.60%), Postives = 192/202 (95.05%), Query Frame = 0
Query:    1 MRVLAALVALPALCSAFVMPSMSTSKSAVRMMAEGEAAGSEWRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            M +LAALVALPA+C+AFV+P  S  K AVRMMA+G+AAG+EWRGGQAASAVSKD KTLLTNEN+A+ILPHRYPFLLVDKVIE EPGKKAVGIKQITANEPQFTGHFP+RPIMPGVLMVEAMAQLSGVLCLQ PVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFM SFGIAKLKGKAYVDGDVAVE+KEMTFALSK
Sbjct:    1 MHLLAALVALPAMCTAFVVPLPSAPKHAVRMMADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: XP_005854174.1 (3-hydroxyacyl-CoA dehydrogenase [Nannochloropsis gaditana CCMP526] >EKU22185.1 3-hydroxyacyl-CoA dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 325.9 bits (834), Expect = 9.100e-86
Identity = 160/171 (93.57%), Postives = 167/171 (97.66%), Query Frame = 0
Query:   32 MAEGEAAGSEWRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            MA+G+AAG+EWRGGQAASAVSKD KTLLTNEN+A+ILPHRYPFLLVDKVIE EPGKKAVGIKQITANEPQFTGHFP+RPIMPGVLMVEAMAQLSGVLCLQ PVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFM SFGIAKLKGKAYVDGDVAVE+KEMTFALSK
Sbjct:    1 MADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 171          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: AQS99297.1 (3-hydroxyacyl acyl carrier protein dehydratase [Gambierdiscus belizeanus])

HSP 1 Score: 245.7 bits (626), Expect = 1.200e-61
Identity = 114/162 (70.37%), Postives = 135/162 (83.33%), Query Frame = 0
Query:   41 EWRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            EW+G    S +++    ++ N  +A +LPHRYPFLLVDKV+ FEPGKK VG+K +TANEPQFTGHFPDRPIMPGVLMVEAMAQL G++CLQAP+SDG+G FFFAGIDG+KFRKPVVPGDTLVME+EL+KF    GIAK+ G+A+VDG  AVEVKE TFAL K
Sbjct:   96 EWKGADYFSGLTESVPLVMDNVAVAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQAPISDGQGEFFFAGIDGIKFRKPVVPGDTLVMEMELLKFREKRGIAKMTGRAFVDGKRAVEVKEFTFALVK 257          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: AQS99235.1 (3-hydroxyacyl acyl carrier protein dehydratase [Gambierdiscus excentricus])

HSP 1 Score: 242.7 bits (618), Expect = 1.000e-60
Identity = 116/170 (68.24%), Postives = 140/170 (82.35%), Query Frame = 0
Query:   33 AEGEAAGSEWRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            A+GE    +++G Q  S +++    ++ N  +A +LPHRYPFLLVDKV+ FEPGKK VG+K +TANEPQFTGHFPDRPIMPGVLMVEAMAQL G++CLQ P+SDGKG FFFAGIDG+KFR+PVVPGDTLVME+EL+KF    GIAK+KG+A+VDG  AVEVKE TFAL K
Sbjct:   87 ADGE---DKFKGAQHYSGLTEGVPLVMDNVAVAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQDPISDGKGEFFFAGIDGIKFRRPVVPGDTLVMEMELLKFREKRGIAKMKGRAFVDGQRAVEVKEFTFALVK 253          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: CEM37968.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 232.3 bits (591), Expect = 1.400e-57
Identity = 107/161 (66.46%), Postives = 131/161 (81.37%), Query Frame = 0
Query:   42 WRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            WR   + S ++ D   ++  E I  +LPHRYPFLLVDKVIEFEPGK+AVG+K I+ANEPQFTGHFP+R IMPGVL +EAMAQL G++CLQ P+SDGKG FFFAG+DGV++++PVVPGD LVME+EL+ + A FGIAK+ G  YVDG  AVEVKE TFAL+K
Sbjct:   65 WRSAASVSELTSDVPVVMDIEAIRKVLPHRYPFLLVDKVIEFEPGKRAVGVKTISANEPQFTGHFPERAIMPGVLQIEAMAQLGGLVCLQEPLSDGKGDFFFAGVDGVRWKRPVVPGDVLVMEMELLSWRAKFGIAKMTGAGYVDGQKAVEVKEFTFALAK 225          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: PHJ24656.1 (beta-hydroxyacyl-acyl carrier protein dehydratase [Cystoisospora suis])

HSP 1 Score: 229.9 bits (585), Expect = 6.800e-57
Identity = 110/171 (64.33%), Postives = 137/171 (80.12%), Query Frame = 0
Query:   33 AEGEAAGSEWRGGQAASAVSKDFKT-LLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            A+  ++ S WRG +  SA+++   + +   E I  ILPHR+PFLLVDKV+EFEPGK+AVG+KQ+TANE QF GHFP R I+PGVL VEA+AQL+G++ LQ P+SDGKG FFFAG+DGVK++KPVVPGDTLVMEVEL  +   FGIAK  GKAYVDG +AVEV EMTFAL++
Sbjct:   71 AQEPSSASAWRGAKTISALTESTASPVFDVEKIKEILPHRFPFLLVDKVLEFEPGKRAVGVKQVTANEDQFNGHFPSRAILPGVLQVEALAQLAGIVALQPPISDGKGTFFFAGVDGVKWKKPVVPGDTLVMEVELTTWKEKFGIAKATGKAYVDGKIAVEVAEMTFALAR 241          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: EJK74799.1 (hypothetical protein THAOC_03501 [Thalassiosira oceanica])

HSP 1 Score: 228.0 bits (580), Expect = 2.600e-56
Identity = 114/202 (56.44%), Postives = 150/202 (74.26%), Query Frame = 0
Query:    1 MRVLAALVALPALCSAFVMPSMSTSKSAVRMMAEGEAAGSEWRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            M+ LA +  L A   AF+ PS   + + +      +   +E+RG Q  SA++ D KT  + E+IA +LPHRYPFLLVDKV+E+E GK+AVGIK +T NEP FTGHFPDRPIMPGVL VEA+AQL+G++CLQ   ++   +FFFAG+DGVK++KPVVPGDTLVMEVE+ K+   FGIA   G+A+VDG++AVE+ EM FAL+K
Sbjct:   87 MKSLALVGTLLASTGAFMAPSARRAPTQLFSEEAADETTAEYRGAQVISALTADVKTQFSLEDIAKVLPHRYPFLLVDKVVEYEMGKRAVGIKSVTLNEPHFTGHFPDRPIMPGVLQVEALAQLAGIICLQMEGAEPGAVFFFAGVDGVKWKKPVVPGDTLVMEVEIKKWNKRFGIATATGRAFVDGEMAVELDEMKFALAK 288          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: CBJ32128.1 (beta-hydroxyacyl-ACP dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 224.6 bits (571), Expect = 2.900e-55
Identity = 113/179 (63.13%), Postives = 131/179 (73.18%), Query Frame = 0
Query:   28 AVRMMAEGEAAGSEWRGGQAASAVSKDF----KTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            A+RM  E  A   E      AS +SK            ENI  +LPHRYPF LVDKV+ F PGK  +GIK IT NEPQFTGHFPD PIMPGVL VEAMAQL G++CLQ P SDG+G FFFAG+DGVK+RKPVVPGD LVME+ELVK+   FG+AK+ GKAYVDG +A++VKE TFAL+K
Sbjct:   52 ALRMAEEAAAGEGEEAPAPTASDISKGIAHPEAIFTVPENILKVLPHRYPFALVDKVLHFVPGKSIIGIKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGVKWRKPVVPGDVLVMEMELVKWKPRFGLAKMTGKAYVDGVLALDVKEFTFALAK 230          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: PFH31938.1 (beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Besnoitia besnoiti])

HSP 1 Score: 219.9 bits (559), Expect = 7.000e-54
Identity = 106/162 (65.43%), Postives = 128/162 (79.01%), Query Frame = 0
Query:   40 SEWRGGQAASAVSKDFKT-LLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFAL 201
            S WRG +  S +++     +   E I  ILPHR+PFLLVDKV+EFEPGK+AVG+KQ+TANE QF GHFP R IMPGVL VEA+AQL+G++ LQ P+SDG+G FFFAG+DGVK++KPVVPGDTLVMEVEL  +   FGIAK  GKA+VDG  A+EV EMTFAL
Sbjct:   68 STWRGAKEISGLTESSAVPVFDVEKIRQILPHRFPFLLVDKVLEFEPGKRAVGVKQVTANEDQFNGHFPGRAIMPGVLQVEALAQLAGIVALQPPISDGQGNFFFAGVDGVKWKKPVVPGDTLVMEVELTAWKEKFGIAKATGKAFVDGKPAIEVGEMTFAL 229          
BLAST of NO16G02130 vs. NCBI_GenBank
Match: GAX24951.1 (3-hydroxyacyl-[acyl-carrier-protein] dehydratase [Fistulifera solaris])

HSP 1 Score: 218.0 bits (554), Expect = 2.700e-53
Identity = 113/204 (55.39%), Postives = 148/204 (72.55%), Query Frame = 0
Query:    1 MRVLAALVALPALCSAFV--MPSMSTSKSAVRMMAEGEAAGSEWRGGQAASAVSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEPQFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFALSK 203
            M++L +L+   +   AF+  M S+S+S S+ ++          + G +  SA++KD KT+ T E I  ILPHRYPF LVDKVIE+E GK+AVG+K +T NE  F GHFP RPIMPGV+ VEA+AQL+G++CLQ   +    +FFFAG+DGVK++KPVVPGDTLVMEVE+ K+ A FG+AK  GKAYVDG + VEV EMTFAL+K
Sbjct:    1 MKLLLSLLLTASSAMAFMPRMTSVSSSSSSTQL-------AESFTGAKDISALTKDLKTVFTTEQIDEILPHRYPFALVDKVIEYEAGKRAVGVKCVTKNEEFFNGHFPSRPIMPGVMQVEALAQLAGIVCLQMEGAAPGAVFFFAGVDGVKWKKPVVPGDTLVMEVEIKKWNAKFGLAKATGKAYVDGGLVVEVDEMTFALAK 197          
The following BLAST results are available for this feature:
BLAST of NO16G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23904.15.700e-9689.60beta-hydroxyacyl-acp dehydratase precursor [Nannoc... [more]
XP_005854174.19.100e-8693.573-hydroxyacyl-CoA dehydrogenase [Nannochloropsis g... [more]
AQS99297.11.200e-6170.373-hydroxyacyl acyl carrier protein dehydratase [Ga... [more]
AQS99235.11.000e-6068.243-hydroxyacyl acyl carrier protein dehydratase [Ga... [more]
CEM37968.11.400e-5766.46unnamed protein product [Vitrella brassicaformis C... [more]
PHJ24656.16.800e-5764.33beta-hydroxyacyl-acyl carrier protein dehydratase ... [more]
EJK74799.12.600e-5656.44hypothetical protein THAOC_03501 [Thalassiosira oc... [more]
CBJ32128.12.900e-5563.13beta-hydroxyacyl-ACP dehydratase [Ectocarpus silic... [more]
PFH31938.17.000e-5465.43beta-hydroxyacyl-acyl carrier protein dehydratase ... [more]
GAX24951.12.700e-5355.393-hydroxyacyl-[acyl-carrier-protein] dehydratase [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003204NSK003204Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02130.1NO16G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593772gene_6107Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100113g7gene6553Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02130.1NO16G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02130 ID=NO16G02130|Name=NO16G02130|organism=Nannochloropsis oceanica|type=gene|length=1132bp
ATGCGTGTCTTAGCCGCGCTCGTGGCGCTACCAGCGCTGTGTTCTGCCTT
CGTAATGCCCTCTATGTCTACATCCAAGgtaagctatgaactgtgcactg
ctatggtataaggtttgatagacccacccccggtagaggcacgtacgact
caccttttcgtctctttccccccacgcctctttggagTCTGCCGTCCGCA
TGATGGCAGAGGGTGAAGCGGCAGGTTCTGAGTGGCGTGGCGGGCAGGCC
GCCTCGGCCGTGTCTAAGGACTTCAAGACCCTCCTTACCAATGAGAACAT
CGCCGCCATCCTGCCCCATCGATATCCCTTCTTGCTCGTCGACAAGGTCA
TTGAGTTCGAGCCCGGGAAGAAGGCCGTGGGCATCAAGCAGATTACGGCT
AACGAGCCTCAGTTCACTGGTCACTTTCCCGATCGGCCCATCATGCCTGG
TGTCTTGATGGTGGAGGCAATGGCCCAGCTGTCGGGCGTGCTGTGCCTGC
AAGCCCCGGTCTCGGACGGGAAGGGCCTTTTCTTTTTTGCTGgtacgtac
cacaggaagcgtgcggcttgctgcgaaaagaacgacgagaagataaacga
tggagaggaacttcggtcgtgtgatcggatgacttcgataccgggcgggc
ctatttgtctcccctcctctttctcgctcctgcagcctggaacccaaggc
cggggagttacattttggattggatatatacgctagcatcatcactattc
aggtagtcatttcttccttcgcgaactacaaaacaaaacagGCATTGACG
GCGTGAAGTTCCGCAAGCCTGTGGTGCCCGGCGACACGCTGGTGATGGAG
GTGGAGCTTGTCAAGTTCATGGCTTCTTTTGGTATCGCCAAGCTCAAGGG
CAAGGCTTACGTTGATGGCGATGTGGCTGTCGAGGTCAAGgtacgttgtc
atgggaaggaggtagggtgaaagggggaaatgactttgtcggcgtacatt
ccttaaatgtggtcctgatttcaatgttttgtgtatatgtgtgtcctttt
cctgtgctgatttttacattcgacactctcacgccttctccactacacgt
cgtagGAGATGACTTTCGCTCTGTCGAAGTAA
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protein sequence of NO16G02130.1

>NO16G02130.1-protein ID=NO16G02130.1-protein|Name=NO16G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MRVLAALVALPALCSAFVMPSMSTSKSAVRMMAEGEAAGSEWRGGQAASA
VSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEP
QFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVK
FRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFAL
SK*
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Synonyms
Publications