NO16G02000, NO16G02000 (gene) Nannochloropsis oceanica

Overview
NameNO16G02000
Unique NameNO16G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2346
Alignment locationchr16:585981..588326 +

Link to JBrowse

Properties
Property NameValue
DescriptionCryptochrome
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:585981..588326 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036134Crypto/Photolyase_FAD-like_sf
IPR036155Crypto/Photolyase_N_sf
IPR005101Photolyase_FAD-bd/Cryptochr_C
IPR006050DNA_photolyase_N
Homology
BLAST of NO16G02000 vs. NCBI_GenBank
Match: XP_005852637.1 (cryptochrome [Nannochloropsis gaditana CCMP526] >EKU23198.1 cryptochrome [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 844.3 bits (2180), Expect = 2.300e-241
Identity = 397/518 (76.64%), Postives = 436/518 (84.17%), Query Frame = 0
Query:   53 ARAVVSIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGYPDTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDAGK 571
            A   VS+HWFRKGLRLHDNPA LEAC+GATHV+PVFILDPHFAKP+ IGVLRYRFMLQTI++LDDNLR++GSRL+VV+GQP EALPRLF  WGV+KLTFESD EPYAK RD  VC LAA   V V TF SHTLHDPE YVA+LQGK  PTVYQSF+K+F+S+GPV  V   VDA  + PP P+ L  G +                       D+F VP L  +GYP+TDAPTLYPGGETAALARM  HL+N+KYI TFEKPKTSPNALRPSTTVLSPYLKHGALS+RLFYHSL S+LA+HKGPHTQPPVSLVGQ+LWREF+YL GHAT N+D M GNPICRQIPWG++ ELL AWEE RTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFE YLLDADWS+NTGNWLWLSASAFFHQYFRVYSPVAFG KTDKEGEYI+KY+PVLRKMP+KYIYEPWKAPK VQE AGCVVGRDYP PVV+H+ VSK LMG+MK AYDA K
Sbjct:   14 AARTVSLHWFRKGLRLHDNPALLEACEGATHVYPVFILDPHFAKPDVIGVLRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVSKLTFESDTEPYAKVRDRHVCELAAKHQVHVQTFPSHTLHDPEAYVARLQGKDVPTVYQSFVKLFASMGPVAPVASTVDAKRLPPPAPEYL-SGQDGKKAGQGNGHAGGEEIEEDRTRGDDFSVPDLSGIGYPETDAPTLYPGGETAALARMQEHLANVKYIVTFEKPKTSPNALRPSTTVLSPYLKHGALSSRLFYHSLRSILAQHKGPHTQPPVSLVGQLLWREFFYLQGHATPNFDKMVGNPICRQIPWGKNAELLGAWEEARTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEKYLLDADWSVNTGNWLWLSASAFFHQYFRVYSPVAFGAKTDKEGEYIRKYLPVLRKMPIKYIYEPWKAPKGVQETAGCVVGRDYPHPVVDHATVSKQLMGKMKAAYDANK 530          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: EWM23893.1 (6-4 photolyase [Nannochloropsis gaditana])

HSP 1 Score: 840.1 bits (2169), Expect = 4.300e-240
Identity = 409/566 (72.26%), Postives = 450/566 (79.51%), Query Frame = 0
Query:    7 TIVLLFFISL--LPSVFSFTLPSGPTTTAXXXXXXXXXXXXXXXXXTAARAVVSIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGYPDTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDAGK 571
            T+ L   +SL  LP   SF  P   T+TA                   A   VS+HWFRKGLRLHDNPA LEAC+GATHV+PVFILDPHFAKP+ IGVLRYRFMLQTI++LDDNLR++GSRL+VV+GQP EALPRLF  WGVTKLTFESD EPYAK RD  VC LAA   V V TF SHTLHDPE YVA+LQGK  PTVYQSF+K+F+S+GPV  V   VDA  + PP  + L  G +                       D+F VP L  +GYP+TDAPTLYPGGETAALARM  HL+N+KYI TFEKPKTSPNALRPSTTVLSPYLKHGALS+RLFYHSL S+LA+HKGPHTQPPVSLVGQ+LWREF+YL GHAT N+D M GNPICRQIPWG++ ELL AWEE RTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFE YLLDADWS+NTGNWLWLSASAFFHQYFRVYSPVAFG KTDKEGEYI+KY+PVLRKMP+KYIYEPWKAPK VQE AGCVVGRDYP PVV+H+ VSK LMG+MK AYDA K
Sbjct:    8 TLALAISLSLAYLPRSASFVRPITMTSTA-----------VSKPAAKGAARTVSLHWFRKGLRLHDNPALLEACEGATHVYPVFILDPHFAKPDVIGVLRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVTKLTFESDTEPYAKVRDRHVCELAAEHQVHVQTFPSHTLHDPEAYVARLQGKDVPTVYQSFVKLFASMGPVAPVASTVDAKRLPPPALEYL-SGQDGKKAGQGNGHAGGEEIEEDRTRGDDFSVPGLSGIGYPETDAPTLYPGGETAALARMQEHLANVKYIVTFEKPKTSPNALRPSTTVLSPYLKHGALSSRLFYHSLRSILAQHKGPHTQPPVSLVGQLLWREFFYLQGHATPNFDKMVGNPICRQIPWGKNAELLGAWEEARTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEKYLLDADWSVNTGNWLWLSASAFFHQYFRVYSPVAFGAKTDKEGEYIRKYLPVLRKMPIKYIYEPWKAPKGVQETAGCVVGRDYPHPVVDHATVSKQLMGKMKAAYDANK 561          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: XP_011414696.1 (PREDICTED: cryptochrome-1 isoform X1 [Crassostrea gigas] >AQM57606.1 6-4 photolyase [Crassostrea gigas])

HSP 1 Score: 600.9 bits (1548), Expect = 4.400e-168
Identity = 290/517 (56.09%), Postives = 358/517 (69.25%), Query Frame = 0
Query:   58 SIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGYPDTD-APTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDAGKAEG 574
            +IHWFRKGLRLHDNPA   AC+ A  V PVFILDP FA    +GV R+RF+LQT+Q+LD+NL+K+ SRLY+++G+P +  P+LF  WGV+ LTFE DIEPYA  RD+ + +LA    V V +  SHTL DP++ ++K  GK P T YQ    + SSLG  P  V         P   K   + D                         ++ VP+L ++G  + +  P L+PGGET AL R++  +    ++ TFEKPKT+PN+L PSTTVLSPYLK G LS R+FY+ L  V  K K  HT PPVSL+GQ+LWREFYY     T N+D MEGNP+C+QIPW  ++  L AW+EGRTGYPFIDA MTQLR+EGWIHHLARH++ACFLTRGDLW +WEEG +VFE YLLDADWSLN GNW+WLSASAFFHQYFRVYSP+ FG KTDK+G+ I+KYVP L K P  YIYEPWKAP  VQE AGC+VG+DYP P+VEH  + K  + RM  AY+A K EG
Sbjct:    5 AIHWFRKGLRLHDNPALQAACKVADDVKPVFILDPWFANNANVGVNRWRFLLQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPYALTRDSEIKKLADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLT-YQRLQTVLSSLGSPPKPVDS-------PSECKTKTESDH----------------------DKKYGVPSLEDLGKSEKECGPLLFPGGETEALRRLESMMGKKNWVCTFEKPKTAPNSLEPSTTVLSPYLKFGCLSPRMFYYKLQEVYNKAK--HTSPPVSLLGQLLWREFYYCVAVDTPNFDKMEGNPVCKQIPWDTNESYLKAWKEGRTGYPFIDAVMTQLRQEGWIHHLARHSVACFLTRGDLWINWEEGMKVFEEYLLDADWSLNAGNWMWLSASAFFHQYFRVYSPIEFGKKTDKDGDNIRKYVPQLSKYPTAYIYEPWKAPLKVQEKAGCIVGKDYPKPIVEHDKIRKKNIERMAQAYNASKTEG 489          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: XP_004995002.1 (DNA photolyase [Salpingoeca rosetta] >EGD83498.1 DNA photolyase [Salpingoeca rosetta])

HSP 1 Score: 600.5 bits (1547), Expect = 5.800e-168
Identity = 294/518 (56.76%), Postives = 360/518 (69.50%), Query Frame = 0
Query:   57 VSIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGP-PTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQD-EFRVPTLIEMGYP--DTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDAGK 571
            VSIHWFRKGLRLHDN A L A +GA  V+PVF+LDPHFAKPE +GV+RY F+L++++DLD +LR LGSRLYV++G+P++AL   F  W VT+LTFE D EPYAK RD     LA   G+ V T   HTLHDPE+Y+AK  G    P  Y SF  +F  LG VP+ +          P    L + D                     A+ D  F VP+L +MGY   D +    +PGGET AL RM  HL    +I  FEKPKTSPN L PSTT LSPYLK G LS RLFYH L+ V A+++  H +PPVSL GQ+LWREF+++ G+A KN+D MEGN ICRQI W  +  LLAAWE  RTGYP+IDACMTQLR EGW+HHLARHA+ACFLTRGDL+QSWE+GA+VF+  L+DADW LN+ NW+WLS S+FF+QYFRVYSPVAFG KTD  G YI+KY+P L+  P KYIYEPWKAP  VQ + GC++G+DYP P+V+H+ VS A   R++  YDA K
Sbjct:    6 VSIHWFRKGLRLHDNAALLAALKGAKQVYPVFVLDPHFAKPEFVGVVRYNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDTQARELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALSAPTKEDF--PQSSTLVRTD---------------------ALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYR-DHAKPPVSLHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDWDTNDALLAAWENARTGYPWIDACMTQLRREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMWLSCSSFFYQYFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKDYPEPIVDHAEVSAANKARIRACYDALK 499          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: XP_011414697.1 (PREDICTED: cryptochrome-1 isoform X2 [Crassostrea gigas] >EKC39908.1 Cryptochrome-1 [Crassostrea gigas])

HSP 1 Score: 599.0 bits (1543), Expect = 1.700e-167
Identity = 289/516 (56.01%), Postives = 357/516 (69.19%), Query Frame = 0
Query:   58 SIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGYPDTD-APTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDAGKAE 573
            +IHWFRKGLRLHDNPA   AC+ A  V PVFILDP FA    +GV R+RF+LQT+Q+LD+NL+K+ SRLY+++G+P +  P+LF  WGV+ LTFE DIEPYA  RD+ + +LA    V V +  SHTL DP++ ++K  GK P T YQ    + SSLG  P  V         P   K   + D                         ++ VP+L ++G  + +  P L+PGGET AL R++  +    ++ TFEKPKT+PN+L PSTTVLSPYLK G LS R+FY+ L  V  K K  HT PPVSL+GQ+LWREFYY     T N+D MEGNP+C+QIPW  ++  L AW+EGRTGYPFIDA MTQLR+EGWIHHLARH++ACFLTRGDLW +WEEG +VFE YLLDADWSLN GNW+WLSASAFFHQYFRVYSP+ FG KTDK+G+ I+KYVP L K P  YIYEPWKAP  VQE AGC+VG+DYP P+VEH  + K  + RM  AY+A K E
Sbjct:    5 AIHWFRKGLRLHDNPALQAACKVADDVKPVFILDPWFANNANVGVNRWRFLLQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPYALTRDSEIKKLADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLT-YQRLQTVLSSLGSPPKPVDS-------PSECKTKTESDH----------------------DKKYGVPSLEDLGKSEKECGPLLFPGGETEALRRLESMMGKKNWVCTFEKPKTAPNSLEPSTTVLSPYLKFGCLSPRMFYYKLQEVYNKAK--HTSPPVSLLGQLLWREFYYCVAVDTPNFDKMEGNPVCKQIPWDTNESYLKAWKEGRTGYPFIDAVMTQLRQEGWIHHLARHSVACFLTRGDLWINWEEGMKVFEEYLLDADWSLNAGNWMWLSASAFFHQYFRVYSPIEFGKKTDKDGDNIRKYVPQLSKYPTAYIYEPWKAPLKVQEKAGCIVGKDYPKPIVEHDKIRKKNIERMAQAYNASKTE 488          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: PRW58875.1 (UVR3 3-like 6-4 DNA photolyase [Chlorella sorokiniana])

HSP 1 Score: 591.7 bits (1524), Expect = 2.700e-165
Identity = 289/517 (55.90%), Postives = 358/517 (69.25%), Query Frame = 0
Query:   53 ARAVVSIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGYPDTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNA-LRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDA 569
            A    SI WFRKGLR+HDNPA L A QGA H+ P+FILDP F +P+KIGV R +F+L+++ DLD + R  GSRL V++G+P E LP +F  WGVT+L FESD EPYAKQRD AV +LA A GV VH+  SHTL+DP+  +A+  GK PP   Q+F K+  ++GP P+  P  D    LPPL       D                            VP+L ++GYP     T + GGETAALARM  +LS+  ++  FEKPK +P   LRP+TTVLSPYLK G LS RLF+  L  + ++  G HTQPPVSL GQ+LWREF+ L G A  N+D MEGNPICRQIPW  D   + AWEE RTGYP+IDA M QLR +GW+HHLARH++ACFLTRGDLW SWE G  VF+ YL+DADWSLN  NW WLSASAFF QYFRVYSP++FG + DK G+YI+ ++P L+ MP KYIYEPW AP +VQ+AAGC++G+DYP P+V+H+VV K  M +MK AYDA
Sbjct:  101 AMGATSIIWFRKGLRIHDNPALLAAAQGADHLCPLFILDPWFLQPDKIGVNRVQFLLESLADLDASFRARGSRLLVLRGKPQEVLPPVFKEWGVTRLCFESDTEPYAKQRDAAVRQLAEAAGVEVHSSVSHTLYDPQLLLARNGGK-PPLTMQAFTKLADAVGPPPA--PAADPPEKLPPLAPQAASLDAAASG-----------------------VPSLADIGYPPA-GTTPFKGGETAALARMADYLSDKDWVCAFEKPKGNPALFLRPATTVLSPYLKFGCLSPRLFHAKLQQIYSERSGKHTQPPVSLRGQLLWREFFTLCGSAVPNFDRMEGNPICRQIPWADDPARIQAWEESRTGYPWIDAIMAQLRRQGWMHHLARHSVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQYFRVYSPISFGKQYDKNGDYIRHFLPALKDMPAKYIYEPWTAPLSVQQAAGCIIGKDYPRPIVDHAVVHKENMAKMKAAYDA 590          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: XP_020629231.1 (cryptochrome-1-like [Orbicella faveolata])

HSP 1 Score: 589.7 bits (1519), Expect = 1.000e-164
Identity = 281/512 (54.88%), Postives = 357/512 (69.73%), Query Frame = 0
Query:   58 SIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQD--EFRVPTLIEMG--YPDTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMA 566
            +IHWFRKGLRLHDN +  EAC+ +  + PV+ +DP + K   +G  R+RF++Q++ DLD+NL+ LGSRL+V+QG+P   LPRLF  W +T+LTFE D EP  +QRD+ +C LA+  G+ V T   H+L+D +K + K  G   P  Y+    + SS+GP    VP VD         + L+ G                     T V D  E+++PTL E+G   P+  +  L+PGGET AL R+D H+    ++  FEKP TSPN+L+PSTTVLSPY+  G LSARLFYH LS V ++ K  H+ PPVSL GQ+LWREF++   +AT N++ MEGNP+C Q+PW  + E + AW E RTGYPFIDA MTQLR EGWIHHLARHA+ACFLTRGDLW SWEEG +VFE YLLD DWSLN GNW+WLSASAFFH YFRVYSPVAFG KTD  G+YIKKY+PVL+K P KYIYEPW AP++VQ+AAGCV+G+DYP P+V+H VV K  + RMK A
Sbjct:   11 TIHWFRKGLRLHDNQSLREACETSLTLRPVYFIDPDYVKHGNMGFNRWRFLIQSLNDLDNNLKSLGSRLFVIQGKPELELPRLFKAWRITRLTFEVDHEPDGRQRDSKICELASEAGIEVETRVCHSLYDLDKVIEK-NGGAAPLTYKKLCSVVSSMGPPLKPVPAVD---------EQLFDG-------------------CSTPVDDENEYKLPTLEELGIEMPEESSTVLFPGGETEALRRLDEHMEKEDWVCKFEKPNTSPNSLQPSTTVLSPYVMFGCLSARLFYHRLSEVYSRAK-KHSSPPVSLHGQLLWREFFFTAAYATPNFNRMEGNPVCLQVPWDTNPEFVKAWSEARTGYPFIDAIMTQLRREGWIHHLARHAVACFLTRGDLWISWEEGLKVFEKYLLDHDWSLNAGNWMWLSASAFFHAYFRVYSPVAFGKKTDPNGDYIKKYIPVLKKYPPKYIYEPWTAPQSVQKAAGCVIGKDYPRPIVDHKVVVKTNITRMKKA 492          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: NP_001081421.1 (6-4 photolyase [Xenopus laevis] >BAA97126.1 6-4 photolyase [Xenopus laevis] >AAI69683.1 6-4 photolyase [Xenopus laevis] >AAI69685.1 6-4 photolyase [Xenopus laevis] >OCT72376.1 hypothetical protein XELAEV_18035355mg [Xenopus laevis])

HSP 1 Score: 589.0 bits (1517), Expect = 1.700e-164
Identity = 286/525 (54.48%), Postives = 363/525 (69.14%), Query Frame = 0
Query:   58 SIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGP------VPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGY-PDTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAY--DAGKAEG 574
            SIHWFRKGLRLHDNPA L A +    + P+FILDP F K  ++ V R+RF++  ++DLD+NL+K+ SRL+VV+G+P E  P LF +W VT+LTFE DIEPY++QRD  V +LAA   V V    S+TL+D ++ +A+  GK PP  Y  F  + + LGP       P++  M D            WK                      ++  +++ VPTL E+G  P    P LYPGGE+ AL+R+DLH+    ++  F+KP+T PN+L PSTTVLSPY+K G LSAR F+  ++ +    K  H+ PPVSL GQ+LWREFYY  G    N++ MEGNP+C Q+ W  +KE L AW EGRTGYPFIDA MTQLR EGWIHHLARHA+ACFLTRGDLW SWEEG +VFE  LLDADWSLN GNWLWLSASAFFHQ+FRVYSPVAFG KTDK G+YIKKY+P+L+K P +YIYEPWK+P+++QE AGC++G+DYP P+VEH+VVSK  + RMK AY   +G  EG
Sbjct:    5 SIHWFRKGLRLHDNPALLAAMKDCAELHPIFILDPWFPKNMQVSVNRWRFLIDALKDLDENLKKINSRLFVVRGKPAEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAAEHDVQVIQKVSNTLYDIDRIIAENNGK-PPLTYVRFQTVLAPLGPPKRPIKAPTLENMKDC--------HTPWK----------------------SSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGKK--HSDPPVSLHGQLLWREFYYTTGAGIPNFNKMEGNPVCVQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLWLSASAFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKSPRSLQERAGCIIGKDYPKPIVEHNVVSKQNIQRMKAAYARRSGSTEG 496          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: PSC67921.1 (cryptochrome-1-like isoform X1 [Micractinium conductrix])

HSP 1 Score: 588.2 bits (1515), Expect = 3.000e-164
Identity = 290/512 (56.64%), Postives = 356/512 (69.53%), Query Frame = 0
Query:   58 SIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQDEFRVPTLIEMGYPDTDAPTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNA-LRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDA 569
            SI WFRKGLRLHDNPA L A   A H+ P+FILDP F KP+++GV R +F+L+++ DLD + R  GSRL V++G+P E LPR F  WGVT L FESD EPYAK+RD AV +LA A GV V +  SHTL+DP+  +A+  GK PP   QSF K+  ++GP PS  P  D    LPPLP      D                            VPTL  +GYP     TL+ GGETAALARM  +LS+  ++  FEKPK +P A +RP+TTVLSPYLK G LS RLF+  L  + A+ KG HTQPPVSL GQ+LWREF+ L G A  N+D M+GNP C+QIPW  D E L AW++ RTGYP+IDA M QLR++GW+HHLARH++ACFLTRGDLW SWE G  VF+ YL+DADWSLN  NW WLSASAFF QYFRVYSPV FG + DK G+YI+ ++PVL+ MP KYIYEPW AP +VQ+AAGC++G+DYP P+V+H+  SK  M RMK AY+A
Sbjct:    6 SIIWFRKGLRLHDNPALLAAAADADHLCPLFILDPWFLKPDRVGVNRVQFLLESLADLDASFRARGSRLLVLRGKPAEVLPRAFKDWGVTHLCFESDTEPYAKERDAAVAQLAEAAGVEVASPVSHTLYDPQLLLARNAGK-PPLTMQSFTKLVDAVGPPPS--PAADPPEKLPPLPVKAAALDAAAAG-----------------------VPTLAGIGYPPA-GTTLFKGGETAALARMADYLSDKDWVCAFEKPKGNPAAFMRPATTVLSPYLKFGCLSPRLFHAKLQQIYAERKGKHTQPPVSLRGQLLWREFFTLCGAAIPNFDRMQGNPGCKQIPWVDDPERLQAWQDSRTGYPWIDAIMCQLRQQGWMHHLARHSVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQYFRVYSPVTFGKQYDKNGDYIRHFMPVLKDMPAKYIYEPWTAPLSVQQAAGCIIGKDYPRPIVDHATASKENMARMKAAYEA 490          
BLAST of NO16G02000 vs. NCBI_GenBank
Match: XP_013420209.1 (cryptochrome-1 isoform X1 [Lingula anatina])

HSP 1 Score: 587.4 bits (1513), Expect = 5.000e-164
Identity = 286/523 (54.68%), Postives = 356/523 (68.07%), Query Frame = 0
Query:   51 TAARAVVSIHWFRKGLRLHDNPAFLEAC-QGATHVFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEXXXXXXXXXXXXXXXXXXXTAVQD-EFRVPTLIEMGYPDTD-APTLYPGGETAALARMDLHLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLAKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQDKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTDKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEHSVVSKALMGRMKMAYDAGK 571
            +++R   ++HWFRKGLRLHDNPA L AC +      P+FILDP F K  ++GV R+RF+LQ ++DLDD+L+KL SRL+V++G+P E  P++F  WG+T+LTFE D EPYA+ RD  + +LA    V V    SHTL+D EK +A+  G  P T YQ F  + S LG  P     + +  +         KG                     TA  D E+ VPTL ++     D    ++PGGET AL RM+ +L    +I  FEKPKT PN+L PSTTVLSPYLK G LSARLF+H L  +  + K  H+QPPVSL GQ+LWREF+Y  G    N+D MEGNP+CRQIPW    E + AW   RTGYPFIDA MTQLR+EGWIHHLARHA+ACFLTRGDLW SWEEG +VFE  LLDADWSLN GNW WLSASAFFHQYFRVYSP+AFG KTD +GEYIKKY+P+L+K P +YIYEPWKAP+A+QE AGC++G+DYP P+V+H  +SK  + +M  AY   K
Sbjct:  133 SSSRTHKTLHWFRKGLRLHDNPALLAACTKDCAEFRPIFILDPWFVKNARVGVNRWRFLLQALKDLDDSLKKLNSRLFVLKGKPHEVFPKIFKEWGITRLTFEVDTEPYARVRDAEIIKLAKEHNVEVIQKISHTLYDTEKVIARNGGSAPLT-YQRFQTVLSQLGAPPRTAETLTSEHL---------KG----------------CITPVTADHDQEYGVPTLKDLKVDTADMGEVVFPGGETEALKRMERYLKKSNWICNFEKPKTEPNSLEPSTTVLSPYLKFGCLSARLFWHRLQEIYKQCK-KHSQPPVSLHGQLLWREFFYTAGLGVANFDRMEGNPVCRQIPWENKPEYIEAWTHARTGYPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQYFRVYSPIAFGKKTDPQGEYIKKYLPMLKKFPKEYIYEPWKAPRAMQEKAGCIIGKDYPKPIVDHGEISKVNIKKMAAAYALNK 628          
The following BLAST results are available for this feature:
BLAST of NO16G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852637.12.300e-24176.64cryptochrome [Nannochloropsis gaditana CCMP526] >E... [more]
EWM23893.14.300e-24072.266-4 photolyase [Nannochloropsis gaditana][more]
XP_011414696.14.400e-16856.09PREDICTED: cryptochrome-1 isoform X1 [Crassostrea ... [more]
XP_004995002.15.800e-16856.76DNA photolyase [Salpingoeca rosetta] >EGD83498.1 D... [more]
XP_011414697.11.700e-16756.01PREDICTED: cryptochrome-1 isoform X2 [Crassostrea ... [more]
PRW58875.12.700e-16555.90UVR3 3-like 6-4 DNA photolyase [Chlorella sorokini... [more]
XP_020629231.11.000e-16454.88cryptochrome-1-like [Orbicella faveolata][more]
NP_001081421.11.700e-16454.486-4 photolyase [Xenopus laevis] >BAA97126.1 6-4 ph... [more]
PSC67921.13.000e-16456.64cryptochrome-1-like isoform X1 [Micractinium condu... [more]
XP_013420209.15.000e-16454.68cryptochrome-1 isoform X1 [Lingula anatina][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL152nonsL152Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR033ngnoR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003238NSK003238Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02000.1NO16G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529956gene_6090Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100161g13gene6579Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02000.1NO16G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02000 ID=NO16G02000|Name=NO16G02000|organism=Nannochloropsis oceanica|type=gene|length=2346bp
CTTCAAGCCGATCGGTCCCTTAGATTACTTCCGTTGCTTGCCACCTCAGC
AAGCAACGTCCATTACTCAACAGCAGCACATTCGAACGAAGCCACGCTTT
CACCCTCATTAACATCCCTCCTGTACCCGATCTCTGCTTCAGGTCACTAG
CGTGCATGCTACGGGTCTGTACAACCATCGTGCTGCTTTTCTTTATCAGC
CTCCTACCCAGCGTTTTCTCGTTTACCCTCCCTTCCGGCCCTACCACGAC
TGCCATGACCACGACCGCCGTTGCTGCCAGCCCAGGCACAAAGTCAGCCG
CAGCCACTGCCGCCCGTGCTGTGGTCTCCATCCATTGGTTCCGCAAAGGC
CTACGTCTGCACGACAACCCTGCCTTCTTAGAGGCCTGTCAAGGCGCCAC
GCACGTCTTTCCCGTGTTCATCCTCGACCCGCACTTTGCCAAGCCCGAGA
AGATTGGCGTGTTGCGCTATCGGTTCATGCTTCAAACCATTCAAGACCTC
GATGACAACCTCCGGAAGCTCGGCTCACGGCTCTATGTCGTCCAAGGCCA
GCCTGTGGAAGCCCTCCCTCGCTTGTTTGCTCGCTGGGGCGTTACCAAAC
TAACATTCGAGAGCGACATCGAACCATACGCTAAGCAGCGAGACAATGCC
GTCTGTCGCCTAGCCGCAGCAAAAGGAGTGGCCGTCCACACCTTTGCCTC
CCACACGTTACATGACCCCGAAAAATACGTGGCGAAGTTACAGGGCAAAG
GCCCCCCGACTGTCTATCAATCTTTTTTGAAGATTTTTAGTTCCCTGGGG
CCAGTTCCATCGGTGGTGCCAATGGTGGATGCCTCGGTAATACTGCCCCC
ATTGCCAAAAGCGTTGTGGAAGGGTGATGAAGAGGGCGAAGGAGGAGGAG
GAGGAGGAGgtggaggaggaggaggaggaggaggaggaggaggaggagGG
GGAGATCAAGGAGAAGGAGAAGCAGTCACAGCAGTCCAGGATGAATTCCG
CGTCCCCACTCTCATCGAAATGGGTTACCCGGACACAGACGCCCCTACTC
TCTACCCAGGTGGGGAAACCGCCGCCTTGGCCCGCATGGACCTTCACTTG
TCCAACATCAAATACATCACCACCTTCGAAAAACCCAAGACCTCCCCCAA
TGCCCTGCGCCCTTCCACCACCGTCTTGTCGCCATATCTCAAGCACGGTG
CGCTCTCGGCCCGCCTGTTCTATCACTCCCTGTCCTCAGTCCTAGCGAAG
CACAAGGGCCCCCACACCCAGCCCCCTGTCTCCCTGGTCGGTCAGATGCT
TTGGCGTGAATTTTACTACCTCCATGGGCACGCCACCAAGAACTATGACA
TAATGGAGGGCAATCCCATATGTCGTCAGATCCCGTGGGGGCAGGACAAG
GAGTTATTAGCTGCATGGGAGGAGGGGAGGACGGGCTATCCCTTTATTGA
TGCCTGCATGACTCAGTTGAGGGAGGAGGGGTGGATCCATCACTTGGCAA
GGCATGCGCTGGCTTGCTTCTTGACCCGAGGAGATCTGTGGCAGAGCTGG
GAGGAGGGTGCGCGGGTGTTTGAGATATATTTACTGGACGCGGACTGGTC
GTTGAACACGGGCAACTGGTTGTGGTTGTCGGCGTCCGCATTTTTCCACC
AGTATTTCCGGGTTTATAGCCCCGTGGCGTTCGGGATGAAGACGGATAAG
GAGGGAGAGTACATTAAGAAATACGTGCCGGTTCTCAGGAAGATGCCTGT
TAAATACATTTATGAGCCTTGGAAGGCCCCAAAGGCTGTGCAGGAGGCGG
CCGGATGTGTGGTAGGGAGGGATTACCCTATGCCGGTGGTGGAGCATTCG
GTGGTGAGTAAGGCTTTGATGGGGAGGATGAAGATGGCATATGATGCGGG
AAAAGCGGAGGGAGGAGGGGAGGGAGGAGAAGATAAGGGAGGAGGCGTGA
AAAAGCGCGCGGCTGCATCAGCGGGAGCAGGAGATGGAGCGGTGGGTGGC
AAGTTGAAAAAGAGGGCCTGATCGGGGTGAGAAAAGGAAAGATGGAGAGA
GGATCGAGAGGAAGAAGTGTGTCCGAGAAAGCGAGAAAGATCGAAACAAA
CACATGCCGGATACGGTATAATGAAAAAGACTTGTTAATACCATGTACAT
CAAGTAAGCGCGGAAAAAACTTGAGAGATTTGCAGCAAATGCTTTCACGC
CAAGGAAATAAAATCTCATGCAGAAAAAAGAAAAAAATGTTGGGTCCGTA
CCTTGCACTCTAATGAAACAAGGCCTTTTGAGTCGCGAGCGAATGCCAGC
GTAGAAGCAAAGTCCTATCCAAAGGAATGATTAGAATCACCAGACA
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protein sequence of NO16G02000.1

>NO16G02000.1-protein ID=NO16G02000.1-protein|Name=NO16G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MLRVCTTIVLLFFISLLPSVFSFTLPSGPTTTAMTTTAVAASPGTKSAAA
TAARAVVSIHWFRKGLRLHDNPAFLEACQGATHVFPVFILDPHFAKPEKI
GVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQPVEALPRLFARWGVTKLT
FESDIEPYAKQRDNAVCRLAAAKGVAVHTFASHTLHDPEKYVAKLQGKGP
PTVYQSFLKIFSSLGPVPSVVPMVDASVILPPLPKALWKGDEEGEGGGGG
GGGDQGEGEAVTAVQDEFRVPTLIEMGYPDTDAPTLYPGGETAALARMDL
HLSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVL
AKHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDIMEGNPICRQIPWGQ
DKELLAAWEEGRTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQ
SWEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKT
DKEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVE
HSVVSKALMGRMKMAYDAGKAEGGGEGGEDKGGGVKKRAAASAGAGDGAV
GGKLKKRA*
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Synonyms
Publications