NO16G01980, NO16G01980 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G01980 vs. NCBI_GenBank
Match: XP_005852635.1 (rna-binding la domain protein, partial [Nannochloropsis gaditana CCMP526] >EKU23196.1 rna-binding la domain protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 231.5 bits (589), Expect = 7.500e-57 Identity = 108/131 (82.44%), Postives = 120/131 (91.60%), Query Frame = 0 Query: 335 QPQYLPPHVAHTVRTNLMKMSIQEAREYLASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLKQSP 466 QPQYLP H+ VR++LM M+ EAREYLASMAVQQIEYYFSVDNLCRDTYLR+HLDEEGWVPLALICNFPTVASFAA+Y EIVKTLQ++SSVL+YDE NET+RLKEKATAWL+PNG GGMGC RWLKQ+P Sbjct: 31 QPQYLPAHIGTAVRSSLMTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAP 161
BLAST of NO16G01980 vs. NCBI_GenBank
Match: EWM23888.1 (rna-binding la domain protein [Nannochloropsis gaditana]) HSP 1 Score: 209.5 bits (532), Expect = 3.100e-50 Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 0 Query: 352 MKMSIQEAREYLASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLKQSP 466 M M+ EAREYLASMAVQQIEYYFSVDNLCRDTYLR+HLDEEGWVPLALICNFPTVASFAA+Y EIVKTLQ++SSVL+YDE NET+RLKEKATAWL+PNG GGMGC RWLKQ+P Sbjct: 1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAP 114
BLAST of NO16G01980 vs. NCBI_GenBank
Match: CBN74522.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 110.2 bits (274), Expect = 2.500e-20 Identity = 51/122 (41.80%), Postives = 80/122 (65.57%), Query Frame = 0 Query: 345 HTVRTNLMKMSIQEAREYLASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPN-GMGGMGCARWLKQSP 466 + + N+ S +E + Y+ ++AV+QIE+YF+V+NLCRD ++RS++DEEG++P+A + NFP VA F E +I + +S L D ENET+R++E WL+PN G G R++K P Sbjct: 111 YPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGIL-ASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDP 231
BLAST of NO16G01980 vs. NCBI_GenBank
Match: GAY00182.1 (Hypothetical protein PINS_008017 [Pythium insidiosum]) HSP 1 Score: 93.6 bits (231), Expect = 2.400e-15 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLK 463 A A QIE+YFS +NL RD +LR H+D G+VPLA + +F V S +Y +++ ++DS ++ + DEENE +RL+E + WL PN GG G R++K Sbjct: 160 AQWAKSQIEFYFSPENLVRDIFLRQHMDVXGYVPLAXVGSFQAVFSVHQDYPSLLEAMKDSQTI-ELDEENEKIRLRENWSKWLWPNAEGGYGVPRYIK 257
BLAST of NO16G01980 vs. NCBI_GenBank
Match: ETI33428.1 (hypothetical protein F443_19885 [Phytophthora parasitica P1569]) HSP 1 Score: 90.1 bits (222), Expect = 2.700e-14 Identity = 41/99 (41.41%), Postives = 66/99 (66.67%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLK 463 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S +Y +++ +++S +V + DE+NE +RL++ W+ PN +GG G R++K Sbjct: 125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAVGGYGVPRYIK 222
BLAST of NO16G01980 vs. NCBI_GenBank
Match: OWZ06733.1 (hypothetical protein PHMEG_00020974 [Phytophthora megakarya]) HSP 1 Score: 90.1 bits (222), Expect = 2.700e-14 Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLK 463 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S +Y +++ ++ S SV + DE+NE +RL+E W+ PN GG G R++K Sbjct: 118 AEWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKHSDSV-ELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIK 215
BLAST of NO16G01980 vs. NCBI_GenBank
Match: XP_009527529.1 (hypothetical protein PHYSODRAFT_286082 [Phytophthora sojae] >EGZ18471.1 hypothetical protein PHYSODRAFT_286082 [Phytophthora sojae]) HSP 1 Score: 89.7 bits (221), Expect = 3.500e-14 Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLK 463 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S +Y +++ ++ S + L+ DE+NE +RL+E W+ PN GG G R++K Sbjct: 125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSET-LELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIK 222
BLAST of NO16G01980 vs. NCBI_GenBank
Match: XP_024579499.1 (RNA-binding protein LARP/SRO9 and related La domain proteins [Plasmopara halstedii] >CEG43130.1 RNA-binding protein LARP/SRO9 and related La domain proteins [Plasmopara halstedii]) HSP 1 Score: 89.7 bits (221), Expect = 3.500e-14 Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLKQS 465 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S +Y +++ ++ S ++ + DE+NE +RL+ W+ PN GG G R++KQ+ Sbjct: 126 AQWAKSQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKHSDTI-ELDEKNEKIRLRTDWQKWVWPNAKGGYGVPRYIKQT 225
BLAST of NO16G01980 vs. NCBI_GenBank
Match: POM60459.1 (La domain family [Phytophthora palmivora var. palmivora]) HSP 1 Score: 89.7 bits (221), Expect = 3.500e-14 Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLK 463 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S +Y +++ +++S ++ + DE+NE +RL+E W+ PN GG G R++K Sbjct: 118 AEWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETI-ELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIK 215
BLAST of NO16G01980 vs. NCBI_GenBank
Match: XP_008913939.1 (hypothetical protein PPTG_17732 [Phytophthora parasitica INRA-310] >ETK73754.1 hypothetical protein L915_19351 [Phytophthora parasitica] >ETL27191.1 hypothetical protein L916_19240 [Phytophthora parasitica] >ETL80441.1 hypothetical protein L917_19068 [Phytophthora parasitica] >ETM33656.1 hypothetical protein L914_19132 [Phytophthora parasitica] >ETN00762.1 hypothetical protein PPTG_17732 [Phytophthora parasitica INRA-310] >ETP03270.1 hypothetical protein F441_19754 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 89.0 bits (219), Expect = 6.000e-14 Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 0 Query: 364 ASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICNFPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLVPNGMGGMGCARWLK 463 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S +Y +++ +++S +V + DE+NE +RL++ W+ PN GG G R++K Sbjct: 125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIK 222 The following BLAST results are available for this feature:
BLAST of NO16G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01980 ID=NO16G01980|Name=NO16G01980|organism=Nannochloropsis oceanica|type=gene|length=3543bpback to top protein sequence of NO16G01980.1 >NO16G01980.1-protein ID=NO16G01980.1-protein|Name=NO16G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=652bpback to top Synonyms
Publications
|