NO16G01850, NO16G01850 (gene) Nannochloropsis oceanica

Overview
NameNO16G01850
Unique NameNO16G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length318
Alignment locationchr16:543949..544266 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:543949..544266 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO16G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01850.1NO16G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593648gene_6068Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01850.1NO16G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01850 ID=NO16G01850|Name=NO16G01850|organism=Nannochloropsis oceanica|type=gene|length=318bp
ATGAATTCGTTTGGCTATGGGGAGGCTACGAGCGGCGATGAGACGGGTTC
AGGGCTATGGGGGCTTGCCTCTTTCATGAATCACTCGGGCGCGCCCAATA
CCTTTCGATACCATTGCGGTGCCCACATGTTTATAAAGGCGGCCAAGGAA
CTGAAGCGAGGGAATGAGGTAACCACCACATATATTGCAGATGAAAACAT
GGACAAGACGAAGAGGGGGGAAACGCTACTGTGGACGTGGGGAATCATGG
ATGAGCAGGGGGGCAAGAATAAGAGTGCAGGGGGTGGGAAGAAGGCACAT
CAGAAGAAAGAAGAATGA
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protein sequence of NO16G01850.1

>NO16G01850.1-protein ID=NO16G01850.1-protein|Name=NO16G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MNSFGYGEATSGDETGSGLWGLASFMNHSGAPNTFRYHCGAHMFIKAAKE
LKRGNEVTTTYIADENMDKTKRGETLLWTWGIMDEQGGKNKSAGGGKKAH
QKKEE*
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Synonyms
Publications