NO16G01810, NO16G01810 (gene) Nannochloropsis oceanica

Overview
NameNO16G01810
Unique NameNO16G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1566
Alignment locationchr16:531856..533421 +

Link to JBrowse

Properties
Property NameValue
DescriptionDihydrouridine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:531856..533421 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
Homology
BLAST of NO16G01810 vs. NCBI_GenBank
Match: EWM23958.1 (dihydrouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 596.7 bits (1537), Expect = 7.100e-167
Identity = 295/397 (74.31%), Postives = 336/397 (84.63%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQRENRALASPEETMLGLKERLL 466
            G++LL RLGNPRWIAAPMVQQSDLAFRTLVRRYG+ LAYTQM HA NFA+VKV+R+ENWDG+GN PE AFDRPLIAQFAGD+AD+LVRAA  IQHEVDAVDLNLGCPQ+IA+RGHYGA+LLEER LVV LL+HMV+ L VPVT KIRLLPNERDTLEL KAIE  GVAL+TIHGRTREQNK+SVG ADWAAI K+K    IPVVANGGVET+EDA+ CQ  TGADAVMSSEGLLENPSLF PGSSLLV   GG+        RE EA+AL  RQL FA EYLELA ++WPREGVA++KGHLFKMLY +LE+P N+DLR+++GAKGN +K Y++VVQEL ETRY ++D A++LT GA+V+PVSWYRRHREGHALALQR  +   S   T  GLKERLL
Sbjct:  119 GHDLLLRLGNPRWIAAPMVQQSDLAFRTLVRRYGIDLAYTQMFHATNFANVKVYREENWDGLGNAPENAFDRPLIAQFAGDSADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHMVKHLAVPVTTKIRLLPNERDTLELVKAIEDAGVALLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEGLLENPSLFLPGSSLLV---GGERSRMQSCEREVEAFALAHRQLNFAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVVQELLETRYSSIDVAIVLTKGAIVSPVSWYRRHREGHALALQRVKQLCVSGNATNAGLKERLL 512          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: CBJ27785.1 (dihydrouridine synthase [Ectocarpus siliculosus])

HSP 1 Score: 308.1 bits (788), Expect = 5.100e-80
Identity = 170/319 (53.29%), Postives = 215/319 (67.40%), Query Frame = 0
Query:   74 KRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFA--HVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMG 391
            +++G P++IAAPMV+QS+ AFR LVRR+G GLAYTQMLHA  FA  + + FR+  +DGV    +   DRPLI QF G+N D +VRAA +++H  DAVDLNLGCPQKIA++G+YGA+LL   +L   ++A M R+L+VPVT KIR    E DTL+LA+ +EG G  L+T+HGRT    K   G+ADW  IRKVKE + IPVVANGG+ET  DA R  EETGADAVMSSEGLLENP+LF                S      E +   +  R L F  EY+EL  +Y     + SIKGHLFKMLY+LLE   +HDLR ++G
Sbjct:   89 EQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGV----DDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFD---------------SDLIPMEELQGLEVAHRILSFTTEYMELVKRY--PAPMISIKGHLFKMLYRLLE--CHHDLRARLG 384          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: OWZ18183.1 (TRNA-dihydrouridine synthase [Phytophthora megakarya])

HSP 1 Score: 277.3 bits (708), Expect = 9.600e-71
Identity = 157/385 (40.78%), Postives = 225/385 (58.44%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYKRVVQELQETRYPNVDTALILTGGA------VVAPVSWYRRHREGHALALQREN 448
            GY+  + +G+P+ I APMV QS+LAFR L R+ G    YT MLH+  FA    +R++ ++          DRPL+ QF G++   ++ AA+ +++  DAVDLNLGCPQ IAR+GHYG+FL+ +++ V  ++  +   L +PVT KIR+ P++ +TLE A  ++  G  L+T+HGRT+E NK +V   DW  IR++KE L+IPV+ANGG+ET+ED  RC E TG D VMSSEGLLENP+LF        E +      +SF              L  A +YLE A  Y P      ++ HLFKML+Q  +L V+ DLRD + A   + ++   +V EL E     +  A     G+        A  SWYRRHR+G     +R++
Sbjct:    6 GYDFYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFE------RHIQDRPLVVQFCGNDPKTVLAAAKMVENHCDAVDLNLGCPQGIARKGHYGSFLMHDKDTVKSIVETLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVDWDIIRRIKERLTIPVIANGGIETYEDVDRCLEATGCDGVMSSEGLLENPALF-------AETNNTPGDDTSF--------------LELAKQYLECATLY-PPASDKIVRAHLFKMLFQ--DLRVHSDLRDALAA-AKSQEEMVDIVDELAE----RLKAAESSNDGSEEEKVVYAAETSWYRRHRQGQEKLKRRDS 355          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: XP_002899255.1 (tRNA-dihydrouridine synthase, putative [Phytophthora infestans T30-4] >EEY62224.1 tRNA-dihydrouridine synthase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 274.2 bits (700), Expect = 8.100e-70
Identity = 156/383 (40.73%), Postives = 223/383 (58.22%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYKRVVQE----LQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQREN 448
            GY+  + +G+P+ I APMV QS+LAFR L R+ G    YT MLH+  FA    +R++ ++          DRPL+ QF G++   ++ AA+ ++   DAVDLNLGCPQ IAR+GHYG+FL+ ++E V   +  +   L +PVT KIR+ P++ +TLE A  ++  G  L+T+HGRT+E NK +V   +W  IR++KE L+IPV+ANGG+ET ED  RC E TG D VMSSEGLLENP+LF   ++   E        +SF              L  A +YLE A  Y P      ++ HLFK+L+Q  +L V+ DLRD + A   + ++   +V E    L+E    N    +     A  A  SWYRRHR+G     +R++
Sbjct:   14 GYDFYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFE------HHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNNTPGE-------DTSF--------------LELARQYLECATLY-PPASDKIVRAHLFKILFQ--DLRVHSDLRDALAA-AKSQQEMVEIVDELAVRLKEAESENAGPEIKKV--AYAAKASWYRRHRQGQEKLRRRDS 363          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: CCA22696.1 (tRNAdihydrouridine synthase putative [Albugo laibachii Nc14])

HSP 1 Score: 273.5 bits (698), Expect = 1.400e-69
Identity = 150/376 (39.89%), Postives = 222/376 (59.04%), Query Frame = 0
Query:   61 LSMARNEVGYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHR 437
            +S+ +   G++  + +G+P+ I APMV QS+LAFR L R +G  L YT M H+  FA  + +R   ++      +   DRPLI QF G++ D +V AA+Y++   DAVD+NLGCPQ IAR+G+YGAFL++E+  V  ++  +V ++ VPVT KIR+ P+E +T+E ++ +E  G  L+ IHGRT+E NK++VG  DW  I+++K  LSIPV+ANGG+ET +D V+C E T AD VMSSE +L NP+LF                   F  R +       R    A EY++ A  Y P   V  ++ HLFK+L++  +L  + DLR  + A+ NT  + K ++QEL++     +               SWYRRHR
Sbjct:    1 MSVMQKLRGHDFFRSIGSPQRIVAPMVDQSELAFRMLCRHHGAQLCYTPMFHSRLFAESQEYRTRMFE------QHVRDRPLIVQFCGNDGDTMVAAAKYVEGHCDAVDINLGCPQGIARKGNYGAFLMKEKTRVCEIVEKLVAEVAVPVTCKIRVFPDEAETIEFSRMLEKAGCDLLVIHGRTKEMNKVTVGQVDWEIIKRIKSTLSIPVIANGGIETADDIVKCLEATSADGVMSSEAILGNPALF----------------DEPF--RNDPLDPKGPRYFDLAKEYMDFATIY-PPGNVKIVRAHLFKLLFE--DLTHHIDLRSAL-ARANTFSEMKHLLQELEDRLNAPIPYKYTQEN-------SWYRRHR 341          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: XP_009829335.1 (hypothetical protein H257_05986 [Aphanomyces astaci] >ETV81477.1 hypothetical protein H257_05986 [Aphanomyces astaci])

HSP 1 Score: 273.5 bits (698), Expect = 1.400e-69
Identity = 158/376 (42.02%), Postives = 213/376 (56.65%), Query Frame = 0
Query:   67 EVGYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALA 443
            E G++L   L  P+ I APMV QS+LAFR L R+YG  L YT M HA  F     +R+  W         A DRPL  QF G+N D ++ AA Y++   DAVDLNLGCPQ IA++G YGAFL+ E ++V  +++ +   L+VPV  KIRLLP   DTL  A  +   G   + +HGRT+E NK  V   DW AI ++K+ L IPV ANGG+ET  D  RC +ET  + VMSSEG+LE P+LF                     + + + + +  RQ+  A+EYLELA QY P +    ++ HLFK+L+Q  EL V+ DLR+Q+G  G+T +    +  EL + R    D   I          SWYRRHR+   +A
Sbjct:   45 ERGWKLYNDLHQPKRIVAPMVDQSELAFRMLTRKYGADLCYTPMFHARMFHEDATYRETAWQ------VEATDRPLFVQFCGNNPDVVLNAARYVEGHCDAVDLNLGCPQGIAKKGRYGAFLMHEPDVVRAIVSKLSSNLSVPVACKIRLLPKYEDTLAFANMLIDAGCCWLVVHGRTKEMNKHLVRECDWNAIARLKKALPIPVFANGGIETDADVQRCLDETSVEGVMSSEGILERPALF---------------------ANDRDPHGVPLRQIDLAIEYLELAKQYPPPD--KFLRAHLFKILFQ--ELKVHTDLREQIGL-GHTHEALVAITAEL-KARLDAPDAEPI----PASVEASWYRRHRKQQEIA 383          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: ETM48419.1 (hypothetical protein L914_07046 [Phytophthora parasitica])

HSP 1 Score: 272.7 bits (696), Expect = 2.400e-69
Identity = 152/382 (39.79%), Postives = 219/382 (57.33%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGA---KGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQREN 448
            GY+  + +G+P+ I APMV QS+LAFR L R+ G    YT M H+  FA    +R++ ++          DRPL+ QF G++   ++ AA+ ++   DAVDLNLGCPQ IAR+GHYG+FL+ +++ V  ++  +   L +PVT KIR+ P++ +TLE A  ++  G  L+T+HGRT+E NK +V   DW  IR++KE L+IPV+ANGG+ET ED  RC E TG D VMSSEGLLENP+LF        E +      +SF              L  A +YLE A  Y P      ++ HLFK+L+Q  +L V+ DLRD + A   +   ++    +   L+E +  N             A  SWYRRHR+G     +R++
Sbjct:   14 GYDFYRAIGSPKHIVAPMVDQSELAFRMLCRKLGAECCYTPMFHSRLFAESAEYREKMFE------HHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQSIARKGHYGSFLMHDKDTVKAIVETLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVDWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALF-------AETNNTPGEDTSF--------------LELAKQYLECATLY-PPASDKIVRAHLFKILFQ--DLRVHSDLRDALAAAKSQDEMVEIVDELAMRLKEAQSENAGPEAKKV--TYAAETSWYRRHRQGQEKLRRRDS 363          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: ETI48754.1 (hypothetical protein F443_07263 [Phytophthora parasitica P1569] >ETK88651.1 hypothetical protein L915_07133 [Phytophthora parasitica] >ETL42044.1 hypothetical protein L916_07083 [Phytophthora parasitica] >ETL95195.1 hypothetical protein L917_06972 [Phytophthora parasitica] >ETP18523.1 hypothetical protein F441_07272 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 271.9 bits (694), Expect = 4.000e-69
Identity = 152/382 (39.79%), Postives = 219/382 (57.33%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGA---KGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQREN 448
            GY+  + +G+P+ I APMV QS+LAFR L R+ G    YT M H+  FA    +R++ ++          DRPL+ QF G++   ++ AA+ ++   DAVDLNLGCPQ IAR+GHYG+FL+ +++ V  ++  +   L +PVT KIR+ P++ +TLE A  ++  G  L+T+HGRT+E NK +V   DW  IR++KE L+IPV+ANGG+ET ED  RC E TG D VMSSEGLLENP+LF        E +      +SF              L  A +YLE A  Y P      ++ HLFK+L+Q  +L V+ DLRD + A   +   ++    +   L+E +  N             A  SWYRRHR+G     +R++
Sbjct:   14 GYDFYRAIGSPKHIVAPMVDQSELAFRMLCRKLGAECCYTPMFHSRLFAESAEYREKMFE------HHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKDTVKAIVETLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVDWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALF-------AETNNTPGEDTSF--------------LELAKQYLECATLY-PPASDKIVRAHLFKILFQ--DLRVHSDLRDALAAAKSQDEMVEIVDELAMRLKEAQSENAGPEAKKV--TYAAETSWYRRHRQGQEKLRRRDS 363          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: ETO77461.1 (hypothetical protein F444_07334 [Phytophthora parasitica P1976] >ETP46425.1 hypothetical protein F442_07329 [Phytophthora parasitica P10297])

HSP 1 Score: 271.9 bits (694), Expect = 4.000e-69
Identity = 152/382 (39.79%), Postives = 219/382 (57.33%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGA---KGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQREN 448
            GY+  + +G+P+ I APMV QS+LAFR L R+ G    YT M H+  FA    +R++ ++          DRPL+ QF G++   ++ AA+ ++   DAVDLNLGCPQ IAR+GHYG+FL+ +++ V  ++  +   L +PVT KIR+ P++ +TLE A  ++  G  L+T+HGRT+E NK +V   DW  IR++KE L+IPV+ANGG+ET ED  RC E TG D VMSSEGLLENP+LF        E +      +SF              L  A +YLE A  Y P      ++ HLFK+L+Q  +L V+ DLRD + A   +   ++    +   L+E +  N             A  SWYRRHR+G     +R++
Sbjct:   14 GYDFYRAIGSPKHIVAPMVDQSELAFRMLCRKLGAECCYTPMFHSRLFAESAEYREKMFE------HHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKDTVKAIVETLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVDWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALF-------AETNNTPGEDTSF--------------LELAKQYLECATLY-PPASDKIVRAHLFKILFQ--DLRVHSDLRDALAAAKSQDEMVEIVDELTMRLKEAQSENAGPEAKKV--TYAAETSWYRRHRQGQEKLRRRDS 363          
BLAST of NO16G01810 vs. NCBI_GenBank
Match: XP_009537691.1 (hypothetical protein PHYSODRAFT_289018 [Phytophthora sojae] >EGZ06927.1 hypothetical protein PHYSODRAFT_289018 [Phytophthora sojae])

HSP 1 Score: 271.2 bits (692), Expect = 6.900e-69
Identity = 154/385 (40.00%), Postives = 223/385 (57.92%), Query Frame = 0
Query:   69 GYELLKRLGNPRWIAAPMVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYKRVVQEL------QETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQREN 448
            GY+  + +G+P+ I APMV QS+LAFR L R+ G    YT MLH+  FA    +R++ ++          DRPL+ QF G++   ++ AA+ ++   DAVDLNLGCPQ IAR+G+YG+FL+ +++ V  ++  +   L VPVT KIR+ P++ +TLE A  ++  G  L+T+HGRT+E NK +V   DW  IR++KE L+IPV+ANGG+ET ED  RC E TG D VMSSEGLLENP+LF        + +      +SF              L  A +YLE A  Y P      ++ HLFK+L+Q  +L V+ DLRD + A   +  +   +V+EL       E+     +T  +       A  SWYRRHR+G     +R++
Sbjct:    6 GYDFYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFE------RHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHDKDTVQAIVETLSANLNVPVTVKIRVFPDDNETLEFADMLQKAGCDLLTVHGRTKEMNKTAVREVDWDIIRRIKERLTIPVIANGGIETHEDIARCMEATGCDGVMSSEGLLENPALF-------ADTNNKPGEDTSF--------------LALARQYLECATLY-PPASDKIVRAHLFKILFQ--DLRVHSDLRDAL-ANAKSQDEMVDIVEELAVRLKEAESGNAGPETKKV----EYAAETSWYRRHRQGQEKLRRRDS 355          
The following BLAST results are available for this feature:
BLAST of NO16G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23958.17.100e-16774.31dihydrouridine synthase [Nannochloropsis gaditana][more]
CBJ27785.15.100e-8053.29dihydrouridine synthase [Ectocarpus siliculosus][more]
OWZ18183.19.600e-7140.78TRNA-dihydrouridine synthase [Phytophthora megakar... [more]
XP_002899255.18.100e-7040.73tRNA-dihydrouridine synthase, putative [Phytophtho... [more]
CCA22696.11.400e-6939.89tRNAdihydrouridine synthase putative [Albugo laiba... [more]
XP_009829335.11.400e-6942.02hypothetical protein H257_05986 [Aphanomyces astac... [more]
ETM48419.12.400e-6939.79hypothetical protein L914_07046 [Phytophthora para... [more]
ETI48754.14.000e-6939.79hypothetical protein F443_07263 [Phytophthora para... [more]
ETO77461.14.000e-6939.79hypothetical protein F444_07334 [Phytophthora para... [more]
XP_009537691.16.900e-6940.00hypothetical protein PHYSODRAFT_289018 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003165NSK003165Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01810.1NO16G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529704gene_6063Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g53gene6520Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01810.1NO16G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01810 ID=NO16G01810|Name=NO16G01810|organism=Nannochloropsis oceanica|type=gene|length=1566bp
ATGATTCCAAGATCACGCTGGTGGGTGCCGCGCTTGGACAAGCAGAAGCC
TTCGTCACTCCTCCTTGCAAGCCTCCTCTTCCTCACGATGACGATGGCCC
GGAGGGTCTCCTCTTTTTGCTTTGTCCACAACTGCCGTCACCAGATGCCA
CTACGGCCGCCAGCATCACGTTTGCGTCGCCTGTCTATGGCCCGTAATGA
GGTTGGCTATGAGCTGCTGAAAAGGCTAGGTAACCCGCGATGGATTGCAG
CGCCCATGGTCCAGCAGTCCGACTTGGCCTTCCGGACATTGGTACGGCGC
TATGGCGTTGGTCTGGCGTACACACAGATGTTACACGCGTGGAACTTTGC
GCATGTAAAAGTCTTCCGTCAGGAAAATTGGGATGGCGTTGGGAACGGAC
CCGAGGGTGCCTTTGACCGCCCACTGATTGCTCAATTCGCTGGGGACAAT
GCTGATGACCTTGTGCGTGCGGCGGAATACATTCAACACGAAGTCGACGC
CGTCGATTTGAATTTGGGTTGTCCACAGAAAATAGCGCGCCGCGGGCACT
ACGGTGCATTTTTGCTGGAAGAGCGAGAGCTGGTTGTGGGCCTCCTCGCT
CACATGGTTCGGAAACTTACGGTGCCCGTCACAGCCAAAATTCGTTTATT
ACCCAACGAGCGTGACACCTTGGAATTAGCCAAAGCCATAGAGGGGACGG
GTGTGGCGCTCGTGACTATTCATGGGAGGACGCGCGAACAAAATAAGATC
TCGGTGGGTAGTGCTGACTGGGCCGCCATCCGAAAAGTGAAGGAAGGCTT
AAGCATTCCCGTGGTGGCGAATGGAGGGGTAGAGACCTTTGAAGATGCGG
TGCGATGCCAAGAAGAGACGGGAGCTGACGCTGTCATGTCTTCCGAAGGG
TTGCTTGAAAATCCCTCCTTGTTTCGGCCGGGCTCATCCTTGCTAGTGGA
AGGAAGTGGCGGGCAATCCCTGAGCTCCTCGTTTGGATCGAGGGAAGAGG
AGGCTTATGCTTTGACGCAGCGACAGTTGGGTTTCGCGATGGAATACCTG
GAGCTCGCAGGACAATATTGGCCACGGGAAGGAGTAGCATCAATCAAGGG
ACATTTGTTCAAAATGCTCTATCAGTTGCTAGAGCTGCCAGTGAACCATG
ATCTGAGAGACCAGATGGGAGCCAAGGGGAACACGTTGAAGGACTACAAA
CGCGTAGTGCAGGAATTGCAGGAGACAAGGTACCCAAATGTGGACACCGC
ACTGATCTTGACGGGGGGGGCTGTGGTTGCGCCTGTGAGTTGGTATCGCC
GGCATAGGGAAGGACATGCCTTGGCTCTACAGAGAGAGAATCGCGCTCTC
GCCTCGCCAGAAGAGACGATGTTGGGGCTCAAGGAACGCTTGCTTCAGAA
ACGTGCCGCGCGTGAATTGGCCGCGGCAGGAGTGGCAGCAGCAGCCGCAG
CAGCAGCGGCAGTAGCAGCGACAGCAGACGCAGGAGCAGCTGGGGGGCAG
GCTGTCAGTGGTAGTAGGGTAGGTGTCAGCGAAAGAGAGACCGCGCCAGC
TGAAGCATTGGCATAA
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protein sequence of NO16G01810.1

>NO16G01810.1-protein ID=NO16G01810.1-protein|Name=NO16G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MIPRSRWWVPRLDKQKPSSLLLASLLFLTMTMARRVSSFCFVHNCRHQMP
LRPPASRLRRLSMARNEVGYELLKRLGNPRWIAAPMVQQSDLAFRTLVRR
YGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPEGAFDRPLIAQFAGDN
ADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYGAFLLEERELVVGLLA
HMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGVALVTIHGRTREQNKI
SVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVRCQEETGADAVMSSEG
LLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEAYALTQRQLGFAMEYL
ELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDLRDQMGAKGNTLKDYK
RVVQELQETRYPNVDTALILTGGAVVAPVSWYRRHREGHALALQRENRAL
ASPEETMLGLKERLLQKRAARELAAAGVAAAAAAAAAVAATADAGAAGGQ
AVSGSRVGVSERETAPAEALA*
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Synonyms
Publications