NO16G01800, NO16G01800 (gene) Nannochloropsis oceanica

Overview
NameNO16G01800
Unique NameNO16G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length568
Alignment locationchr16:531126..531693 -

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:531126..531693 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: EWM23955.1 (peptidyl-prolyl cis-trans isomerase 10 [Nannochloropsis gaditana])

HSP 1 Score: 314.3 bits (804), Expect = 2.200e-82
Identity = 142/161 (88.20%), Postives = 156/161 (96.89%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFADS 162
            MAVTLHTSLG+IKLELYCDLVPR C+NFLALAASGTY+NTLFHRNIR+FMVQGGDPTGTGKGGESIWGGYL DEFHP+L+HDRRGIVSMANRGPGTNGCQFFITYGEHKHLNN+YTIFAR+IDGMDVLDA+EK PVGKK+RPV D+ IK+V+IHANPFAD+
Sbjct:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFADA 161
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: XP_002909348.1 (peptidyl-prolyl cis-trans isomerase 10 [Phytophthora infestans T30-4] >EEY58162.1 peptidyl-prolyl cis-trans isomerase 10 [Phytophthora infestans T30-4])

HSP 1 Score: 244.2 bits (622), Expect = 2.800e-61
Identity = 111/160 (69.38%), Postives = 130/160 (81.25%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            M+VTLHT+LG+IK+E+ CD  PRA ENFLAL ASG Y+ T FHRN++ FMVQGGDPTGTGKGG+SIWGG + DEFHP  RH+ RGIVSMAN GP TN  QFFITYG+  HLNN YT+F ++IDGMD LDA+EK PV  KNRP+ +I IK+V IHANP AD
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRASENFLALCASGAYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYGKQPHLNNVYTVFGKIIDGMDTLDAIEKTPVDAKNRPLKEIAIKSVTIHANPIAD 160
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: XP_009529179.1 (hypothetical protein PHYSODRAFT_315734 [Phytophthora sojae] >EGZ15430.1 hypothetical protein PHYSODRAFT_315734 [Phytophthora sojae])

HSP 1 Score: 242.3 bits (617), Expect = 1.100e-60
Identity = 110/160 (68.75%), Postives = 128/160 (80.00%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            M+VTLHT+LG+IK+E+ CD  PR  ENFLAL ASG Y+ T FHRN++ FMVQGGDPTGTGKGG+SIWGG + DEFHP  RH+ RGIVSMAN GP TN  QFF+TY +  HLNN YT+F +VIDGMD LDAMEK PV  KNRP+ +I IK+V IHANP AD
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRTAENFLALCASGAYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFVTYAKQPHLNNVYTVFGKVIDGMDTLDAMEKTPVDAKNRPLKEIVIKSVTIHANPIAD 160
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: GAX95617.1 (peptidyl-prolyl cis-trans isomerase-like 3 [Pythium insidiosum])

HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60
Identity = 108/160 (67.50%), Postives = 129/160 (80.62%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            ++VTLHT+LG++K+E++CD  PR  ENFLAL ASG Y+ T  HRNIR FM+QGGDPTGTGKGGE+IWGG + DEFHP  RH+ RGIVSMAN GP TN  QFFITY + +HLNN YT+F +VIDGM+VLDAMEK PV  KNRP+ DI I+ V IHANP A+
Sbjct:  631 ISVTLHTTLGDLKIEVFCDTAPRTAENFLALCASGGYDGTRLHRNIRGFMIQGGDPTGTGKGGETIWGGKMDDEFHPQNRHNCRGIVSMANNGPNTNRQQFFITYAKQQHLNNVYTVFGKVIDGMEVLDAMEKAPVNAKNRPLKDIVIERVTIHANPIAE 790
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: OQR89794.1 (peptidyl-prolyl cis-trans isomerase 10 [Thraustotheca clavata])

HSP 1 Score: 239.6 bits (610), Expect = 6.900e-60
Identity = 108/159 (67.92%), Postives = 127/159 (79.87%), Query Frame = 0 
Query:    2 AVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            +VTLHTSLG+IK+E++CD VP   ENFLAL AS  Y+ T+FHRNI+ FM+QGGDPTGTGKGGESIWGG   DEFHP  RH+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F +VIDG +VLDAMEK PV +K+RP+ DI + +V IHANP AD
Sbjct:    4 SVTLHTSLGDIKIEVFCDTVPTTAENFLALCASNAYDKTIFHRNIKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNVRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFEVLDAMEKTPVNEKHRPMKDIVLNSVTIHANPLAD 162
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: XP_008914416.1 (peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica INRA-310] >ETK72678.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >ETL26130.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >ETL79342.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >ETM32601.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >ETN00210.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica INRA-310] >ETO61035.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica P1976] >ETP02151.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica CJ01A1] >ETP30329.1 peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica P10297])

HSP 1 Score: 238.8 bits (608), Expect = 1.200e-59
Identity = 109/160 (68.12%), Postives = 127/160 (79.38%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            M+VTLHT+LG+IK+E+ CD  PR  ENFLAL ASG Y  T FHRN++ FMVQGGDPTGTGKGG+SIWGG + DEFHP  RH+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F +VIDG+D LDA+EK PV  KNRP+ +I IK+V IHANP AD
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRTSENFLALCASGAYSGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGLDTLDAIEKTPVDAKNRPLKEIVIKSVTIHANPIAD 160
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: XP_008868473.1 (peptidyl-prolyl cis-trans isomerase-like 3 [Aphanomyces invadans] >ETW03089.1 peptidyl-prolyl cis-trans isomerase-like 3 [Aphanomyces invadans])

HSP 1 Score: 238.4 bits (607), Expect = 1.500e-59
Identity = 108/160 (67.50%), Postives = 127/160 (79.38%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            M+VTLHTSLG+IK+E++CD  PR  ENFLAL AS +Y+NT+FHRN++ FM+QGGDPTGTGKGGESIWGG + DEFHP  RH+ RGIVSMAN G  TN  QFFITY +  HLNN YT+F +VIDG DVLDAMEK  V  K+RP+ DI +  V IHANP AD
Sbjct:    1 MSVTLHTSLGDIKMEVFCDTAPRTAENFLALCASNSYDNTVFHRNMKGFMIQGGDPTGTGKGGESIWGGAIDDEFHPQNRHNVRGIVSMANSGANTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKAQVDSKHRPLKDIVLNNVTIHANPIAD 160
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: CBJ25554.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 238.0 bits (606), Expect = 2.000e-59
Identity = 109/160 (68.12%), Postives = 127/160 (79.38%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            M+VTL TSLG+IK+E++CD VPR  ENFLA  ASG Y+ T FHRNI+ FMVQGGDP GTGKGGESIWGG   DEFHP  +HDRRG+VSMA++GP TN  QFFITY    HLNN YT+F +VIDG+DVLD +EK PVGKK RP+ +I IK V IHANP A+
Sbjct:    1 MSVTLETSLGDIKIEVFCDTVPRTAENFLAHCASGYYDGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGMVSMASKGPNTNKSQFFITYTRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPLTEIIIKHVTIHANPVAE 160
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: XP_008607304.1 (peptidyl-prolyl cis-trans isomerase-like 3 [Saprolegnia diclina VS20] >EQC39243.1 peptidyl-prolyl cis-trans isomerase-like 3 [Saprolegnia diclina VS20])

HSP 1 Score: 236.5 bits (602), Expect = 5.900e-59
Identity = 106/160 (66.25%), Postives = 126/160 (78.75%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKTVEIHANPFAD 161
            M+VTLHTSLG+IK+E++CD VP   ENFLAL AS  Y+ T FHRN++ FM+QGGDPTGTGKGGESIWGG   DEFHP  RH+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F +VIDG DVLDAMEK PV  K+RP+ +I + ++ IHANP A+
Sbjct:    1 MSVTLHTSLGDIKIEVFCDTVPTTAENFLALCASNAYDKTTFHRNMKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNARGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKTPVDAKSRPLKEIVLDSIAIHANPLAE 160
[Close]
BLAST of NO16G01800 vs. NCBI_GenBank
Match: ORY43428.1 (cyclophilin-like protein, partial [Rhizoclosmatium globosum])

HSP 1 Score: 236.5 bits (602), Expect = 5.900e-59
Identity = 108/160 (67.50%), Postives = 131/160 (81.88%), Query Frame = 0 
Query:    1 MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFMVQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPV-GKKNRPVNDITIKTVEIHANPFA 160
            M+VTLHT LG++K+EL+C+ VPR  ENFLALAASG Y N LFHRNI+ FM+Q GDPTGTGKGG+SIWG   ADE   +L+H+ RGIVSMAN+GP TN  QFFITYG+H HL+++YT+F +VIDGMD LDA+EKVPV G  NRP+ DI IK++ IHANP A
Sbjct:    1 MSVTLHTDLGDLKIELFCEAVPRTAENFLALAASGYYNNNLFHRNIKGFMIQTGDPTGTGKGGQSIWGAPFADEIKSTLKHNTRGIVSMANKGPDTNKSQFFITYGKHAHLDSKYTVFGKVIDGMDTLDALEKVPVEGGSNRPLQDIRIKSITIHANPLA 160
The following BLAST results are available for this feature:
BLAST of NO16G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23955.12.200e-8288.20peptidyl-prolyl cis-trans isomerase 10 [Nannochlor... [more]
XP_002909348.12.800e-6169.38peptidyl-prolyl cis-trans isomerase 10 [Phytophtho... [more]
XP_009529179.11.100e-6068.75hypothetical protein PHYSODRAFT_315734 [Phytophtho... [more]
GAX95617.14.100e-6067.50peptidyl-prolyl cis-trans isomerase-like 3 [Pythiu... [more]
OQR89794.16.900e-6067.92peptidyl-prolyl cis-trans isomerase 10 [Thraustoth... [more]
XP_008914416.11.200e-5968.13peptidyl-prolyl cis-trans isomerase-like 3 [Phytop... [more]
XP_008868473.11.500e-5967.50peptidyl-prolyl cis-trans isomerase-like 3 [Aphano... [more]
CBJ25554.12.000e-5968.13conserved unknown protein [Ectocarpus siliculosus][more]
XP_008607304.15.900e-5966.25peptidyl-prolyl cis-trans isomerase-like 3 [Saprol... [more]
ORY43428.15.900e-5967.50cyclophilin-like protein, partial [Rhizoclosmatium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003164NSK003164Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01800.1NO16G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593632gene_6062Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g52gene6519Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01800.1NO16G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01800 ID=NO16G01800|Name=NO16G01800|organism=Nannochloropsis oceanica|type=gene|length=568bp
ATGGCCGTCACGCTACACACAAGTCTCGGCAACATTAAGCTAGAGCTCTA
CTGCGACTTGGTGCCCCGAGCATGCGAGgtaagcctttgctaagtgtctc
atgccaaataaacggagcccacagtgttcaccctcccttcctcatcccca
ctagAACTTCTTGGCGCTGGCCGCGTCGGGCACCTACGAGAATACTCTTT
TCCACCGCAATATTCGTGAATTCATGGTGCAGGGGGGGGACCCCACGGGC
ACGGGCAAGGGCGGCGAAAGTATTTGGGGCGGCTACTTGGCAGACGAATT
CCACCCGTCTCTCAGGCACGACCGGCGCGGCATTGTGTCCATGGCCAACC
GCGGCCCTGGCACGAATGGCTGCCAGTTTTTTATAACGTACGGCGAGCAT
AAGCATCTGAACAACCAGTACACCATCTTTGCGCGGGTCATCGATGGGAT
GGACGTGCTAGACGCTATGGAGAAGGTGCCGGTGGGTAAGAAGAATCGGC
CTGTCAACGACATCACTATTAAGACGGTCGAGATCCACGCCAACCCATTT
GCTGATTCTAGTTCTTAG
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protein sequence of NO16G01800.1

>NO16G01800.1-protein ID=NO16G01800.1-protein|Name=NO16G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFM
VQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQ
FFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKT
VEIHANPFADSSS*
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Synonyms
Publications