NO16G01790, NO16G01790 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G01790 vs. NCBI_GenBank
Match: EWM23965.1 (katanin p80 wd40 repeat-containing subunit b1 -like protein [Nannochloropsis gaditana]) HSP 1 Score: 354.4 bits (908), Expect = 8.000e-94 Identity = 306/682 (44.87%), Postives = 387/682 (56.74%), Query Frame = 0 Query: 5 LTSPKRLHEFVAHTVQVNAVTI-APSHRLVATGGDDNVVNVWRVDNASNIASLAGHTSPVMCLTIDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSFELETKQGKPSPILHFNFHPALPMLATSTGDRSLRLFHTDNFKLLASSSFP--GETSPASAMAFDGHGHLCTATTNRLRVLKGDTLEVMGDAGAGAIDAPWGNKVAMLSCHDGQLLAMGVRHNVVSLYTTQMDSPAAAETAV----PAAAGSTARAALAAMEEETPLPQDMAFTPSRITRSVTRRASLLSPPPALSADTGAVSASVAISAVAPAEEIGGGRLAPSQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLDPQARLSRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEGGRVFKRSSPVHMAVEKAQRELTGFL 680 L PK++ EFVAH QVNAVT+ H LVATGGDDN++NVWR+DNA+N+ASL G +SPV CL DP GM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YSFELET QG+ SPILHF+FHP LAT T D +RLF+TD+F+LLAS E AM FDG G L T+T++R+++L TLE G IDAPW N + LS DG++L +N+VSLY+ + +PA + T V + +TA AL+ P + T VT ASL S + ++VA+ +V AE+ RL+PS +P+D AR RAD EII GTMLHRKVLM ALS RL +LQRL +LW+ G+V ETF LL+RLH+ATPEDQGRLTVL+DFL+ +DL+ CA E GP++LE + PLLPVL SLL+LDFEG VLAG+KT+ +LL L G V+++LR P+ +G+DL+REERVE+CR F+ A+ + +R++++ FK +SP ++AVE+A R L +L Sbjct: 8 LAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQ-----GTIDAPWTN-LQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALS--------PASASLRLKNSTSPVTSLASLRS----------SHLSAVALPSVT-AEQCARKRLSPS-------------PALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPL-SGLDLTREERVERCRKFNEAISYSFKRLEEI---RTSNTFKAASPAYLAVERAGRRLESYL 647
BLAST of NO16G01790 vs. NCBI_GenBank
Match: CBN74909.1 (katanin p80 subunit [Ectocarpus siliculosus]) HSP 1 Score: 94.0 bits (232), Expect = 2.000e-15 Identity = 66/168 (39.29%), Postives = 89/168 (52.98%), Query Frame = 0 Query: 487 DDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRL-HEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAG-VDLSREERVEKCRVFHLAMQEAQERVQKLGGK 653 DDE+IA T+L R LS RLTHL+ LR W G V T L RL AT D TV+ADFL + L + VTL+ L+P+L L LD V A + + S++ GG +R+ L APV AG VDL+RE+R+ +CR H A +++ G+ Sbjct: 786 DDEVIAKTLLSRATATSTLSNRLTHLRMLRYGWADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPL-----DGTRVTLDHCLELMPLLEGLWKLDAGSCVAAATRCLESIVRRFGGFIRDTLAAPVAAGRVDLAREDRIARCREAHRAFIRGYHHLERSEGE 948
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_010696578.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Beta vulgaris subsp. vulgaris] >KMS96765.1 hypothetical protein BVRB_8g199500 isoform B [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-10 Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 0 Query: 483 LSRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEG 655 L AD +I M + +VL+ L +RLT LQ +R LW++ VK+ + L +L P+ + V++ F+ +++I +++ + +LPVL LL E H L + L+ G +R + AP GVDL +EER+ C+ + +Q+ Q + L + G Sbjct: 645 LDSADASVIEALMGNHEVLLSTLRSRLTKLQMVRHLWERNDVKDAIIALRKL----PDHSVQADVVSVFMEKMEII---------NMDLFSCMLPVLVGLLDSKMERHAKMALDMLLKLVAAFGPTIRSTISAPPAVGVDLHQEERIACCKQCFVQLQQIQGLLSALARRGG 803
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_010696579.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Beta vulgaris subsp. vulgaris] >KMS96764.1 hypothetical protein BVRB_8g199500 isoform A [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-10 Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 0 Query: 483 LSRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEG 655 L AD +I M + +VL+ L +RLT LQ +R LW++ VK+ + L +L P+ + V++ F+ +++I +++ + +LPVL LL E H L + L+ G +R + AP GVDL +EER+ C+ + +Q+ Q + L + G Sbjct: 644 LDSADASVIEALMGNHEVLLSTLRSRLTKLQMVRHLWERNDVKDAIIALRKL----PDHSVQADVVSVFMEKMEII---------NMDLFSCMLPVLVGLLDSKMERHAKMALDMLLKLVAAFGPTIRSTISAPPAVGVDLHQEERIACCKQCFVQLQQIQGLLSALARRGG 802
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_010696580.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-10 Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 0 Query: 483 LSRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEG 655 L AD +I M + +VL+ L +RLT LQ +R LW++ VK+ + L +L P+ + V++ F+ +++I +++ + +LPVL LL E H L + L+ G +R + AP GVDL +EER+ C+ + +Q+ Q + L + G Sbjct: 644 LDSADASVIEALMGNHEVLLSTLRSRLTKLQMVRHLWERNDVKDAIIALRKL----PDHSVQADVVSVFMEKMEII---------NMDLFSCMLPVLVGLLDSKMERHAKMALDMLLKLVAAFGPTIRSTISAPPAVGVDLHQEERIACCKQCFVQLQQIQGLLSALARRGG 802
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_019102735.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X4 [Beta vulgaris subsp. vulgaris] >KMS96766.1 hypothetical protein BVRB_8g199500 isoform C [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-10 Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 0 Query: 483 LSRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEG 655 L AD +I M + +VL+ L +RLT LQ +R LW++ VK+ + L +L P+ + V++ F+ +++I +++ + +LPVL LL E H L + L+ G +R + AP GVDL +EER+ C+ + +Q+ Q + L + G Sbjct: 643 LDSADASVIEALMGNHEVLLSTLRSRLTKLQMVRHLWERNDVKDAIIALRKL----PDHSVQADVVSVFMEKMEII---------NMDLFSCMLPVLVGLLDSKMERHAKMALDMLLKLVAAFGPTIRSTISAPPAVGVDLHQEERIACCKQCFVQLQQIQGLLSALARRGG 801
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_016715729.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Gossypium hirsutum]) HSP 1 Score: 76.3 bits (186), Expect = 4.200e-10 Identity = 51/187 (27.27%), Postives = 97/187 (51.87%), Query Frame = 0 Query: 484 SRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEGGRVFKRSSPVHMAVEK 671 S D++ +A M +G++ +RL LQ + LW++ VK + ++ D G VLAD + + ++ VTLE+ T LLP+L+ LL D + H+ L + L+ + G + L A AGVD+ E+R E+C + ++ +++ ++ + L + GG V K + +++A+++ Sbjct: 675 SATDEDAVADVMEQHDQFIGSMQSRLAKLQVVHRLWERNDVKGAISAMEKM-----SDHG---VLADVMSIV-----TEKIDIVTLEICTSLLPLLSGLLGSDMDRHLSICLDMLLKLVRIFGSMIYSTLSALAPAGVDIEAEQRFERCNLCYIELEKVKQCLPTL-TRRGGSVAKSAQELNLALQE 847
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_016715730.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Gossypium hirsutum]) HSP 1 Score: 75.5 bits (184), Expect = 7.200e-10 Identity = 51/187 (27.27%), Postives = 96/187 (51.34%), Query Frame = 0 Query: 484 SRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEGGRVFKRSSPVHMAVEK 671 S D++ +A M +G++ +RL LQ + LW++ VK + ++ D G VLAD + + ++ VTLE+ T LLP+L+ LL D + H+ L + L+ + G + L A AGVD+ E+R E+C + ++ +++ ++ + L GG V K + +++A+++ Sbjct: 675 SATDEDAVADVMEQHDQFIGSMQSRLAKLQVVHRLWERNDVKGAISAMEKM-----SDHG---VLADVMSIV-----TEKIDIVTLEICTSLLPLLSGLLGSDMDRHLSICLDMLLKLVRIFGSMIYSTLSALAPAGVDIEAEQRFERCNLCYIELEKVKQCLPTL--TRGGSVAKSAQELNLALQE 846
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_017642557.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Gossypium arboreum] >XP_017642558.1 PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Gossypium arboreum] >KHG00735.1 hypothetical protein F383_07474 [Gossypium arboreum]) HSP 1 Score: 73.9 bits (180), Expect = 2.100e-9 Identity = 50/187 (26.74%), Postives = 96/187 (51.34%), Query Frame = 0 Query: 484 SRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEGGRVFKRSSPVHMAVEK 671 S D++ +A M +G++ +RL LQ + LW++ +K + ++ D G VLAD + + ++ VTLE+ T LLP+L+ LL D + H+ L + L+ + G + L A AGVD+ E+R E+C + + +++ ++ + L + GG V K + +++A+++ Sbjct: 672 SATDEDAVADVMEQHDQFIGSMQSRLAKLQVVHRLWERNDIKGAIGAMEKM-----SDHG---VLADVMSIV-----TEKIDIVTLEICTSLLPLLSGLLGSDMDRHLSICLDMLLKLVRIFGSMIYSTLSALAPAGVDIEAEQRFERCNLCFIELEKVKQCLPTL-TRRGGSVAKSAQELNLALQE 844
BLAST of NO16G01790 vs. NCBI_GenBank
Match: XP_010688600.1 (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Beta vulgaris subsp. vulgaris] >KMT02539.1 hypothetical protein BVRB_9g202260 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 73.9 bits (180), Expect = 2.100e-9 Identity = 53/188 (28.19%), Postives = 92/188 (48.94%), Query Frame = 0 Query: 484 SRADDEIIAGTMLHRKVLMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLADFLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTSLLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLGGKEGGRVFKRSSPVHMAVEKA 672 S ADD+II+ +G+L +RL LQ +R W + VK A E +V+AD + + ++ VTLE+ LLP+LASLL D + H+ L + L+ + G + + A GVD+ E+R+E+C + ++ ++ + + L + GG V K + +++A+ A Sbjct: 623 SIADDDIISQISGRHGQFLGSLQSRLGKLQAVRRFWDRNDVKGAI--------AAMEKMADHSVIADVVSIL-----TEKTDIVTLEICACLLPLLASLLESDMDRHLCISLDMLVKLVRVFGSVIYSTVSASSSVGVDIEAEQRLERCNLCYIELERVKLCLPAL-MRRGGSVAKSAQELNLAISGA 796 The following BLAST results are available for this feature:
BLAST of NO16G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01790 ID=NO16G01790|Name=NO16G01790|organism=Nannochloropsis oceanica|type=gene|length=2046bpback to top protein sequence of NO16G01790.1 >NO16G01790.1-protein ID=NO16G01790.1-protein|Name=NO16G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bpback to top Synonyms
Publications
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