NO16G01770, NO16G01770 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G01770 vs. NCBI_GenBank
Match: EWM23982.1 (holliday junction resolvase [Nannochloropsis gaditana] >EWM23983.1 holliday junction resolvase [Nannochloropsis gaditana]) HSP 1 Score: 300.1 bits (767), Expect = 8.800e-78 Identity = 164/288 (56.94%), Postives = 196/288 (68.06%), Query Frame = 0
Query: 15 LLLFLVLTLLLAIL-PSNAFFSFSVCRPHLHKPLLAIDTIWSPPSSPLSSPRP-TQNLSAALPDLLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHSSNDIDSQAACLVLEDFYQQKGYKAEIVWPDAA----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASMTYDEWRRVESERYGR 297
L +FLV L +++ P F+ R H+ L + +W P S P + +NLS A+ DLLGSRTLGLDWG KKIGVALTAGFSQRPLGTI N AG S NA+RHRPTID LLGIL+AEGA+R+V+G+PLFRDGTLSPQANATK+FAR++ADRAL+ ++AS PFVYLWDERLTSQAAKVNIKTKSFLHSS+D+DSQAACL+LEDFY+ KGYKAE+VWP+ + RA+ +YDEWRR E RYGR
Sbjct: 8 LHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGR 295
BLAST of NO16G01770 vs. NCBI_GenBank
Match: XP_005537039.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81003.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 90.9 bits (224), Expect = 8.100e-15 Identity = 60/187 (32.09%), Postives = 99/187 (52.94%), Query Frame = 0
Query: 70 LSAALPDLLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCS--------LNASRHR----------PTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKT---KSFLHSSNDIDSQAACLVLEDFYQQKGYKAEIV 236
LSA +G R+LG+D+G +++GVA++ GF+ RPLG + N + + +R+R I+ +L + E ++VVG PL DG S Q+ T++FA E +A A V VYLWDE ++Q A+ ++ +S ID+++AC++L +FY+ +G AE+V
Sbjct: 22 LSAENIAQIGRRSLGIDYGFRRVGVAVSVGFAPRPLGCLPNAHRVATGPQNKVKIEGNRNRGQGRKSTVPDRLIEDVLDLALQEAVDQIVVGLPLHSDGLESDQSRETRVFA----------EKLAKATVLPVYLWDECFSTQEARAVLEANAIRSRRRIERQIDAESACVILREFYEYRGACAELV 198
BLAST of NO16G01770 vs. NCBI_GenBank
Match: EJK61293.1 (hypothetical protein THAOC_18252 [Thalassiosira oceanica]) HSP 1 Score: 88.2 bits (217), Expect = 5.200e-14 Identity = 68/227 (29.96%), Postives = 115/227 (50.66%), Query Frame = 0
Query: 20 VLTLLLAILPSNAFFSFSVCRPHLHKPLLAIDTIWSPPSSPLSSP---RPTQNLSAALPDLLGSRTLGLDWGSKKIGVALT-AGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHS---------SNDIDSQAACLVLEDFYQQKGYKAE 234
VL+LLL +P+ F S SV H P + I SS L +P + T + + RTLG+D+G + GVA+T G+ RPL ++ L + +DY +++E A +V+G PL ++GT+S Q+ T+ F R + ++ +P + LWDER TS+ A I ++ + + ++D++AAC++LED+Y++ G +E
Sbjct: 6 VLSLLLPAIPTICFTSGSVAVHRHHPP--STSAIRDISSSTLGAPGLRQQTTSEDELVERFASLRTLGVDYGLTRTGVAVTFGGYRPRPLAILSGLNNTELATA----LVDY----VQSEQATNIVLGLPLNKNGTVSKQSLITRDFGRALLS---EVRSRCGPGIP-IQLWDERYTSKEAASRITAEAMARNQRIPSASDLATELDAEAACIILEDYYKELGQDSE 218
BLAST of NO16G01770 vs. NCBI_GenBank
Match: XP_002178136.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50950.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13 Identity = 53/158 (33.54%), Postives = 91/158 (57.59%), Query Frame = 0
Query: 77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKS-FLHSSNDIDSQAACLVLEDFYQQKGYKAE 234
LLG +++G+D+G + GVA+T G+ +PL + + LNA+ D ++ ++ E A R+VVG PL ++GT++ Q N T +F +A ++LQ E+ V L+DER TS+AA +++ +D+ AAC++LE++Y G A+
Sbjct: 15 LLGVKSIGVDYGLVRTGVAVTVGYDPKPLTILKD-----LNATE---VCDAVIRCVRLEQASRIVVGLPLHKNGTIAEQTNLTLVFVAELAQKSLQ-ELGPGVKVE---LFDERYTSKAAAARAHSRNPHQPLYGTLDADAACIILENYYNDNGLGAQ 160
BLAST of NO16G01770 vs. NCBI_GenBank
Match: GAX12231.1 (putative holliday junction resolvase [Fistulifera solaris]) HSP 1 Score: 81.3 bits (199), Expect = 6.400e-12 Identity = 56/166 (33.73%), Postives = 96/166 (57.83%), Query Frame = 0
Query: 77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAA-KVNIKTKSFLHSSNDIDSQAACLVLEDFYQQK-GYKAEIVWPDAA 241
LLG++++G+D+G K GVA+T G+ +P+ + + LN ++ + ++ I + E A ++VVG PL ++GT++ Q N T F +A L+ VP V LWDER TS+AA + +KS L+ + +D AAC++L+ +Y+ + A++V D A
Sbjct: 86 LLGTKSIGVDYGLVKTGVAMTVGYEPKPITILRD-----LNRTQ---VVQNIVRIAQLERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAACVLR---ELGPQVPIV-LWDERYTSKAALALGGGSKSSLYGT--LDDSAACIILDCYYKSEYSEDAQVVQLDPA 237
BLAST of NO16G01770 vs. NCBI_GenBank
Match: GAX21325.1 (putative holliday junction resolvase [Fistulifera solaris]) HSP 1 Score: 77.4 bits (189), Expect = 9.200e-11 Identity = 50/153 (32.68%), Postives = 90/153 (58.82%), Query Frame = 0
Query: 77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAA-KVNIKTKSFLHSSNDIDSQAACLVLEDFYQQK 229
LLG++++G+D+G K GVA+T G+ +P+ + + +N ++ + ++ I + E A ++VVG PL ++GT++ Q N T F +A L+ VP V LWDER TS+AA + +K+ L+ + +D AAC++L+ +Y+ +
Sbjct: 74 LLGTKSIGVDYGLVKTGVAMTVGYEPKPVTILRD-----MNRTQ---VVQNIVRIAELERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAVCVLR---ELGPQVPIV-LWDERYTSKAALALGGGSKTSLYGT--LDDSAACIILDCYYKSE 212
BLAST of NO16G01770 vs. NCBI_GenBank
Match: KPL89549.1 (hypothetical protein SE16_03780 [Ardenticatena maritima]) HSP 1 Score: 75.9 bits (185), Expect = 2.700e-10 Identity = 50/157 (31.85%), Postives = 83/157 (52.87%), Query Frame = 0
Query: 83 LGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHSS--NDIDSQAACLVLEDFYQQKGYKAEIVWP 238
L +D+G +++GVA G + RP+ + + + SL I L+ + +AE A +++VG PL DG+ QA + FA ++A A D+P VYLWDER TS+ A+ + + +D+ AA ++LE +++ +G AE V P
Sbjct: 7 LAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLESL--------IARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAEVLA---------AQTDIP-VYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIP 145
BLAST of NO16G01770 vs. NCBI_GenBank
Match: WP_082374282.1 (Holliday junction resolvase RuvX [Ardenticatena maritima]) HSP 1 Score: 75.9 bits (185), Expect = 2.700e-10 Identity = 50/157 (31.85%), Postives = 83/157 (52.87%), Query Frame = 0
Query: 83 LGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHSS--NDIDSQAACLVLEDFYQQKGYKAEIVWP 238
L +D+G +++GVA G + RP+ + + + SL I L+ + +AE A +++VG PL DG+ QA + FA ++A A D+P VYLWDER TS+ A+ + + +D+ AA ++LE +++ +G AE V P
Sbjct: 34 LAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLESL--------IARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAEVLA---------AQTDIP-VYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIP 172
BLAST of NO16G01770 vs. NCBI_GenBank
Match: OEU13726.1 (ribonuclease H-like protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 75.5 bits (184), Expect = 3.500e-10 Identity = 47/158 (29.75%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEI-VASADVPFVYLWDERLTSQAAKVNIKTKSFLHSSND------IDSQAACLVLEDFYQQ 228
LLG +++G+D+G + G+A+T GF+ + L I L R ++ + + E R+VVG PL ++GT +A+ TK+ + D +L + + DVP ++LWDER TS+ A I++++ + N +D+++A ++LE +Y++
Sbjct: 1 LLGIKSIGVDYGLVRTGIAVTIGFTPQALEVIEEE---RLEKQRSE-VATRVVELARREKVDRIVVGLPLHKNGT---EADQTKLTRKFAYDHLAKLSLRILGPDVP-IFLWDERYTSKEAAARIRSRASDNGGNSGDLYGCLDAESAIIILEHYYEE 150
BLAST of NO16G01770 vs. NCBI_GenBank
Match: CBN77768.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.1 bits (183), Expect = 4.600e-10 Identity = 55/182 (30.22%), Postives = 91/182 (50.00%), Query Frame = 0
Query: 49 AIDTIWSPPSSPLSSPRPTQNLSAALPDLLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTS-QAAKVNIKTKSFLHSSNDIDSQAACLVLEDFYQQKG 230
++ ++ P S ++ + T S RTL +D+G++++G+A+ G S R + + N G L +R +L + EG +VVG PL R+GT + + FA ++AD AS V+LWDER +S QAA + + S +IDS AA L+L+ F+++ G
Sbjct: 47 SVSWLYPPKPSSTTAVKTTDTRSQETKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTN-VGSDLEVARQ------VLVRARGEGIRDIVVGLPLERNGTETEMCEIVRGFASVLADVG-----AASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSKVEIDSLAASLILKHFFEEGG 216 The following BLAST results are available for this feature:
BLAST of NO16G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01770 ID=NO16G01770|Name=NO16G01770|organism=Nannochloropsis oceanica|type=gene|length=996bpback to top protein sequence of NO16G01770.1 >NO16G01770.1-protein ID=NO16G01770.1-protein|Name=NO16G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bpback to top Synonyms
Publications
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