NO16G01770, NO16G01770 (gene) Nannochloropsis oceanica

Overview
NameNO16G01770
Unique NameNO16G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr16:524870..525865 +

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Properties
Property NameValue
DescriptionHolliday junction resolvase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:524870..525865 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
Homology
BLAST of NO16G01770 vs. NCBI_GenBank
Match: EWM23982.1 (holliday junction resolvase [Nannochloropsis gaditana] >EWM23983.1 holliday junction resolvase [Nannochloropsis gaditana])

HSP 1 Score: 300.1 bits (767), Expect = 8.800e-78
Identity = 164/288 (56.94%), Postives = 196/288 (68.06%), Query Frame = 0
Query:   15 LLLFLVLTLLLAIL-PSNAFFSFSVCRPHLHKPLLAIDTIWSPPSSPLSSPRP-TQNLSAALPDLLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHSSNDIDSQAACLVLEDFYQQKGYKAEIVWPDAA----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASMTYDEWRRVESERYGR 297
            L +FLV  L  +++ P   F+     R   H+  L  + +W P S P  +     +NLS A+ DLLGSRTLGLDWG KKIGVALTAGFSQRPLGTI N AG S NA+RHRPTID LLGIL+AEGA+R+V+G+PLFRDGTLSPQANATK+FAR++ADRAL+  ++AS   PFVYLWDERLTSQAAKVNIKTKSFLHSS+D+DSQAACL+LEDFY+ KGYKAE+VWP+ +                                         RA+ +YDEWRR E  RYGR
Sbjct:    8 LHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGR 295          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: XP_005537039.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81003.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 90.9 bits (224), Expect = 8.100e-15
Identity = 60/187 (32.09%), Postives = 99/187 (52.94%), Query Frame = 0
Query:   70 LSAALPDLLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCS--------LNASRHR----------PTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKT---KSFLHSSNDIDSQAACLVLEDFYQQKGYKAEIV 236
            LSA     +G R+LG+D+G +++GVA++ GF+ RPLG + N    +        +  +R+R            I+ +L +   E   ++VVG PL  DG  S Q+  T++FA          E +A A V  VYLWDE  ++Q A+  ++    +S       ID+++AC++L +FY+ +G  AE+V
Sbjct:   22 LSAENIAQIGRRSLGIDYGFRRVGVAVSVGFAPRPLGCLPNAHRVATGPQNKVKIEGNRNRGQGRKSTVPDRLIEDVLDLALQEAVDQIVVGLPLHSDGLESDQSRETRVFA----------EKLAKATVLPVYLWDECFSTQEARAVLEANAIRSRRRIERQIDAESACVILREFYEYRGACAELV 198          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: EJK61293.1 (hypothetical protein THAOC_18252 [Thalassiosira oceanica])

HSP 1 Score: 88.2 bits (217), Expect = 5.200e-14
Identity = 68/227 (29.96%), Postives = 115/227 (50.66%), Query Frame = 0
Query:   20 VLTLLLAILPSNAFFSFSVCRPHLHKPLLAIDTIWSPPSSPLSSP---RPTQNLSAALPDLLGSRTLGLDWGSKKIGVALT-AGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHS---------SNDIDSQAACLVLEDFYQQKGYKAE 234
            VL+LLL  +P+  F S SV     H P  +   I    SS L +P   + T +    +      RTLG+D+G  + GVA+T  G+  RPL  ++      L  +     +DY    +++E A  +V+G PL ++GT+S Q+  T+ F R +     ++       +P + LWDER TS+ A   I  ++   +         + ++D++AAC++LED+Y++ G  +E
Sbjct:    6 VLSLLLPAIPTICFTSGSVAVHRHHPP--STSAIRDISSSTLGAPGLRQQTTSEDELVERFASLRTLGVDYGLTRTGVAVTFGGYRPRPLAILSGLNNTELATA----LVDY----VQSEQATNIVLGLPLNKNGTVSKQSLITRDFGRALLS---EVRSRCGPGIP-IQLWDERYTSKEAASRITAEAMARNQRIPSASDLATELDAEAACIILEDYYKELGQDSE 218          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: XP_002178136.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50950.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13
Identity = 53/158 (33.54%), Postives = 91/158 (57.59%), Query Frame = 0
Query:   77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKS-FLHSSNDIDSQAACLVLEDFYQQKGYKAE 234
            LLG +++G+D+G  + GVA+T G+  +PL  + +     LNA+      D ++  ++ E A R+VVG PL ++GT++ Q N T +F   +A ++LQ E+     V    L+DER TS+AA     +++        +D+ AAC++LE++Y   G  A+
Sbjct:   15 LLGVKSIGVDYGLVRTGVAVTVGYDPKPLTILKD-----LNATE---VCDAVIRCVRLEQASRIVVGLPLHKNGTIAEQTNLTLVFVAELAQKSLQ-ELGPGVKVE---LFDERYTSKAAAARAHSRNPHQPLYGTLDADAACIILENYYNDNGLGAQ 160          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: GAX12231.1 (putative holliday junction resolvase [Fistulifera solaris])

HSP 1 Score: 81.3 bits (199), Expect = 6.400e-12
Identity = 56/166 (33.73%), Postives = 96/166 (57.83%), Query Frame = 0
Query:   77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAA-KVNIKTKSFLHSSNDIDSQAACLVLEDFYQQK-GYKAEIVWPDAA 241
            LLG++++G+D+G  K GVA+T G+  +P+  + +     LN ++    +  ++ I + E A ++VVG PL ++GT++ Q N T  F   +A   L+        VP V LWDER TS+AA  +   +KS L+ +  +D  AAC++L+ +Y+ +    A++V  D A
Sbjct:   86 LLGTKSIGVDYGLVKTGVAMTVGYEPKPITILRD-----LNRTQ---VVQNIVRIAQLERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAACVLR---ELGPQVPIV-LWDERYTSKAALALGGGSKSSLYGT--LDDSAACIILDCYYKSEYSEDAQVVQLDPA 237          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: GAX21325.1 (putative holliday junction resolvase [Fistulifera solaris])

HSP 1 Score: 77.4 bits (189), Expect = 9.200e-11
Identity = 50/153 (32.68%), Postives = 90/153 (58.82%), Query Frame = 0
Query:   77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAA-KVNIKTKSFLHSSNDIDSQAACLVLEDFYQQK 229
            LLG++++G+D+G  K GVA+T G+  +P+  + +     +N ++    +  ++ I + E A ++VVG PL ++GT++ Q N T  F   +A   L+        VP V LWDER TS+AA  +   +K+ L+ +  +D  AAC++L+ +Y+ +
Sbjct:   74 LLGTKSIGVDYGLVKTGVAMTVGYEPKPVTILRD-----MNRTQ---VVQNIVRIAELERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAVCVLR---ELGPQVPIV-LWDERYTSKAALALGGGSKTSLYGT--LDDSAACIILDCYYKSE 212          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: KPL89549.1 (hypothetical protein SE16_03780 [Ardenticatena maritima])

HSP 1 Score: 75.9 bits (185), Expect = 2.700e-10
Identity = 50/157 (31.85%), Postives = 83/157 (52.87%), Query Frame = 0
Query:   83 LGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHSS--NDIDSQAACLVLEDFYQQKGYKAEIVWP 238
            L +D+G +++GVA   G + RP+  + + +  SL        I  L+ + +AE A +++VG PL  DG+   QA   + FA ++A         A  D+P VYLWDER TS+ A+  +        +    +D+ AA ++LE +++ +G  AE V P
Sbjct:    7 LAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLESL--------IARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAEVLA---------AQTDIP-VYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIP 145          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: WP_082374282.1 (Holliday junction resolvase RuvX [Ardenticatena maritima])

HSP 1 Score: 75.9 bits (185), Expect = 2.700e-10
Identity = 50/157 (31.85%), Postives = 83/157 (52.87%), Query Frame = 0
Query:   83 LGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNIKTKSFLHSS--NDIDSQAACLVLEDFYQQKGYKAEIVWP 238
            L +D+G +++GVA   G + RP+  + + +  SL        I  L+ + +AE A +++VG PL  DG+   QA   + FA ++A         A  D+P VYLWDER TS+ A+  +        +    +D+ AA ++LE +++ +G  AE V P
Sbjct:   34 LAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLESL--------IARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAEVLA---------AQTDIP-VYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIP 172          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: OEU13726.1 (ribonuclease H-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.5 bits (184), Expect = 3.500e-10
Identity = 47/158 (29.75%), Postives = 88/158 (55.70%), Query Frame = 0
Query:   77 LLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEI-VASADVPFVYLWDERLTSQAAKVNIKTKSFLHSSND------IDSQAACLVLEDFYQQ 228
            LLG +++G+D+G  + G+A+T GF+ + L  I       L   R       ++ + + E   R+VVG PL ++GT   +A+ TK+  +   D   +L + +   DVP ++LWDER TS+ A   I++++  +  N       +D+++A ++LE +Y++
Sbjct:    1 LLGIKSIGVDYGLVRTGIAVTIGFTPQALEVIEEE---RLEKQRSE-VATRVVELARREKVDRIVVGLPLHKNGT---EADQTKLTRKFAYDHLAKLSLRILGPDVP-IFLWDERYTSKEAAARIRSRASDNGGNSGDLYGCLDAESAIIILEHYYEE 150          
BLAST of NO16G01770 vs. NCBI_GenBank
Match: CBN77768.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.1 bits (183), Expect = 4.600e-10
Identity = 55/182 (30.22%), Postives = 91/182 (50.00%), Query Frame = 0
Query:   49 AIDTIWSPPSSPLSSPRPTQNLSAALPDLLGSRTLGLDWGSKKIGVALTAGFSQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDGTLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTS-QAAKVNIKTKSFLHSSNDIDSQAACLVLEDFYQQKG 230
            ++  ++ P  S  ++ + T   S         RTL +D+G++++G+A+  G S R +  + N  G  L  +R       +L   + EG   +VVG PL R+GT +      + FA ++AD        AS     V+LWDER +S QAA +       + S  +IDS AA L+L+ F+++ G
Sbjct:   47 SVSWLYPPKPSSTTAVKTTDTRSQETKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTN-VGSDLEVARQ------VLVRARGEGIRDIVVGLPLERNGTETEMCEIVRGFASVLADVG-----AASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSKVEIDSLAASLILKHFFEEGG 216          
The following BLAST results are available for this feature:
BLAST of NO16G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23982.18.800e-7856.94holliday junction resolvase [Nannochloropsis gadit... [more]
XP_005537039.18.100e-1532.09hypothetical protein, conserved [Cyanidioschyzon m... [more]
EJK61293.15.200e-1429.96hypothetical protein THAOC_18252 [Thalassiosira oc... [more]
XP_002178136.11.500e-1333.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX12231.16.400e-1233.73putative holliday junction resolvase [Fistulifera ... [more]
GAX21325.19.200e-1132.68putative holliday junction resolvase [Fistulifera ... [more]
KPL89549.12.700e-1031.85hypothetical protein SE16_03780 [Ardenticatena mar... [more]
WP_082374282.12.700e-1031.85Holliday junction resolvase RuvX [Ardenticatena ma... [more]
OEU13726.13.500e-1029.75ribonuclease H-like protein, partial [Fragilariops... [more]
CBN77768.14.600e-1030.22conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003161NSK003161Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01770.1NO16G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593624gene_6059Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g49gene6517Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01770.1NO16G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01770 ID=NO16G01770|Name=NO16G01770|organism=Nannochloropsis oceanica|type=gene|length=996bp
ATGGCTTCCTCCTTCCAGTGTCGTTACCGCCGACCCCTTCCCCTTCTCCT
CTTCCTCGTCCTGACTCTCCTTCTGGCCATTCTCCCTAGCAATGCCTTTT
TCAGCTTCTCTGTGTGTCGTCCGCACCTCCACAAGCCACTGTTAGCGATT
GATACGATATGGAGTCCACCCTCATCCCCGCTGTCCTCGCCAAGGCCCAC
TCAAAATCTAAGTGCGGCCTTGCCTGACTTGCTAGGCAGCCGCACACTGG
GGTTGGACTGGGGTAGTAAAAAGATTGGCGTCGCTCTTACCGCAGGCTTC
AGCCAACGCCCTCTTGGCACTATCAACAACCCAGCAGGATGTAGTTTGAA
TGCTTCTCGACATCGCCCGACGATTGATTATCTTTTGGGCATCCTGAAAG
CGGAGGGCGCAGTAAGGGTAGTGGTAGGCCACCCTCTATTCCGCGACGGA
ACGCTCAGCCCGCAAGCCAACGCCACGAAGATCTTCGCCCGTTTGATCGC
AGATCGTGCGCTGCAGTTGGAAATTGTGGCTTCCGCGGATGTGCCCTTTG
TGTATCTGTGGGACGAACGTTTGACTTCGCAGGCTGCCAAGGTTAATATC
AAGACTAAGTCTTTCTTGCACAGCTCTAATGATATTGACTCTCAAGCAGC
ATGTTTGGTACTTGAAGATTTCTACCAACAAAAAGGATACAAGGCCGAAA
TTGTGTGGCCTGATGCTGCTGCGGTGGCGGAAGCAGCAACAGCCATGGCA
GGAGCAACGCTGGCCTCGGCAAGCGAAGGAAACAAAAACTCAAATGCCGC
TGCTCCTACTGCCACGGCTTCTCCTCCACCGCGAGCCAGTATGACATACG
ATGAGTGGCGCCGGGTAGAGTCGGAACGCTACGGTCGTGGCACGTCGGCT
GCCTTGCCCGGTGCAGGCAACACAGCTGGAGATGGTGGTGGCGATGATGC
GGGTTCCACGAAGAAAAAGAAGAAAAAGAAAAAGAAAAACAAGTAG
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protein sequence of NO16G01770.1

>NO16G01770.1-protein ID=NO16G01770.1-protein|Name=NO16G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MASSFQCRYRRPLPLLLFLVLTLLLAILPSNAFFSFSVCRPHLHKPLLAI
DTIWSPPSSPLSSPRPTQNLSAALPDLLGSRTLGLDWGSKKIGVALTAGF
SQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDG
TLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNI
KTKSFLHSSNDIDSQAACLVLEDFYQQKGYKAEIVWPDAAAVAEAATAMA
GATLASASEGNKNSNAAAPTATASPPPRASMTYDEWRRVESERYGRGTSA
ALPGAGNTAGDGGGDDAGSTKKKKKKKKKNK*
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Synonyms
Publications