NO16G01730, NO16G01730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G01730 vs. NCBI_GenBank
Match: KHG08244.1 (ATP-dependent DNA helicase Q1 [Gossypium arboreum]) HSP 1 Score: 426.8 bits (1096), Expect = 1.500e-115 Identity = 252/626 (40.26%), Postives = 363/626 (57.99%), Query Frame = 0 Query: 13 ADELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETVEAQDVAADV----------DWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWMEVEISS 628 A+EL+ +E ++ +VE Q+R L ++ L R+ L+ +E + V DWS SF W +AE I+ VFGI++ +RP+Q+EIINA +S D V+M GGGKSLC+QLPA+L +G++LV+SPL+SLI DQ ML S+E+ + + ++ L+L+YVTPEKV SK MS LEK + A RL +DEAHCCS G+DFRP+Y+ L IL+ FP+VP++A+TATAT +V D+ ++L + K F S NRPNLFY V+ K + V + +++ +P ++SGIVYC S+KECE VA++L GI+ YHA +D +++V RW+ +KLQ++V T+AFGMGINKPDVRFVIH S+ KS+E Y QESGRAGRDG S CLL +R++D+ RQ+S+V HE GLQ L +V+Y Q S R CRR R E P + C G CD C+ K + + + LI L+R + K++R T QL D + + +E +E L+ QL+++ +L E++ TAY+ N+YV VG RA V +G+ + M+V +S Sbjct: 7 AEELQNIEFEIHDVEEQIRELIKKQEKLYERRSELQVLLETCPIDVKVGSAPTNVQAEDWSR-SFDWDSQAEDIRFNVFGISS-YRPNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAIL-RQGIALVVSPLLSLIQDQVMGLVASGIPAH-MLTSTTSKEDEKFIYKALEKGEEDLKLLYVTPEKVSKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATMKVQNDLIEMLHIPKCVKFVSTVNRPNLFYMVREKSSVGKIVVDEIAKYIKESYPNKESGIVYCFSRKECEQVASELCERGISADYYHADMDVNAREKVHMRWSKNKLQIIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLFFRSADMPRQSSMVFHENSGLQNLYDIVQYCQ-SKRQCRRSAFFRHFAE----PLQECNGMCDSCAFSSEIKEVDASGHSKLLISLVREMQEKDQRVTMLQLVDRVKNKQKQLDFEL----------------------------------------KREEMEQLVVQLILDRVLKEEFQHTAYATNSYVTVGPRANQVLQGKKIIKMDVTSTS 583
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_017623568.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 34 [Gossypium arboreum]) HSP 1 Score: 426.8 bits (1096), Expect = 1.500e-115 Identity = 252/626 (40.26%), Postives = 363/626 (57.99%), Query Frame = 0 Query: 13 ADELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETVEAQDVAADV----------DWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWMEVEISS 628 A+EL+ +E ++ +VE Q+R L ++ L R+ L+ +E + V DWS SF W +AE I+ VFGI++ +RP+Q+EIINA +S D V+M GGGKSLC+QLPA+L +G++LV+SPL+SLI DQ ML S+E+ + + ++ L+L+YVTPEKV SK MS LEK + A RL +DEAHCCS G+DFRP+Y+ L IL+ FP+VP++A+TATAT +V D+ ++L + K F S NRPNLFY V+ K + V + +++ +P ++SGIVYC S+KECE VA++L GI+ YHA +D +++V RW+ +KLQ++V T+AFGMGINKPDVRFVIH S+ KS+E Y QESGRAGRDG S CLL +R++D+ RQ+S+V HE GLQ L +V+Y Q S R CRR R E P + C G CD C+ K + + + LI L+R + K++R T QL D + + +E +E L+ QL+++ +L E++ TAY+ N+YV VG RA V +G+ + M+V +S Sbjct: 7 AEELQNIEFEIHDVEEQIRELIKKQEKLYERRSELQVLLETCPIDVKVGSAPTNVQAEDWSR-SFDWDSQAEDIRFNVFGISS-YRPNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAIL-RQGIALVVSPLLSLIQDQVMGLVASGIPAH-MLTSTTSKEDEKFIYKALEKGEEDLKLLYVTPEKVSKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATMKVQNDLIEMLHIPKCVKFVSTVNRPNLFYMVREKSSVGKIVVDEIAKYIKESYPNKESGIVYCFSRKECEQVASELCERGISADYYHADMDVNAREKVHMRWSKNKLQIIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLFFRSADMPRQSSMVFHENSGLQNLYDIVQYCQ-SKRQCRRSAFFRHFAE----PLQECNGMCDSCAFSSEIKEVDASGHSKLLISLVREMQEKDQRVTMLQLVDRVKNKQKQLDFEL----------------------------------------KREEMEQLVVQLILDRVLKEEFQHTAYATNSYVTVGPRANQVLQGKKIIKMDVTSTS 583
BLAST of NO16G01730 vs. NCBI_GenBank
Match: GAQ81432.1 (Helicase conserved C-terminal domain containing protein [Klebsormidium nitens]) HSP 1 Score: 421.4 bits (1082), Expect = 6.400e-114 Identity = 252/622 (40.51%), Postives = 356/622 (57.23%), Query Frame = 0 Query: 19 VESKLSEVERQLRALKDERSTLLSRKVVL---KETVEAQDVAAD------VDWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHPRQ--SGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVC--SGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWMEVEISS 628 +E++++ + R+L+ ++D +L R+ L KE +E + +AA V + + W + ++K +FG+AA +R Q+E IN LS D FV+M +GGGKSLC+QLP ++ G++LV+SPL+SLI DQ ML + +EE V + ++ LR VYVTPEKV SK MS LEK ++A RL +DEAHCCS G+DFRP+Y L IL+K FP VP++A+TATAT +V DV ++L + F S NRPNL+Y V+ K AG V + +F++ +P Q SGIVYC S+KECE VA++L+ GI+ G YHA ++ + V + W+ + LQVVVAT+AFGMGINKPDVRFV+H S+ KS+E Y QESGRAGRDG S C+L YR +DV RQ+ +V E GL+ L +V Y Q S + CRR I R GE P + C G CD C +G VRK ++T L+ LLR LA KEKR T QL + W +A KE E + QL+++ +L E++ TA++ N+Y+ G ++E G ++V++EV SS Sbjct: 24 LEAEIAGINRELKTIEDSVGRMLERQAHLAKQKEKLEVKVLAAQKVLSYPVQGWAGKYSWDDDIADLRKNLFGLAA-FRKHQRETINCVLSGSDCFVIMPSGGGKSLCYQLPTMVLQAGVTLVVSPLLSLIQDQ-VMGLSVMGIEAAMLTSQIDKEEETRVYKALEHGGQDLRFVYVTPEKVAKSKRFMSKLEKCDKAGRLALIAIDEAHCCSQWGHDFRPDYHHLGILKKQFPKVPMMALTATATQRVQDDVQEMLGIQGCPKFVSSVNRPNLYYEVREKLAGATAVVDDMVAFIQEHYPSQQDSGIVYCFSRKECEQVASELSQRGISAGYYHADMNPRQRHEVHQNWSCNYLQVVVATVAFGMGINKPDVRFVLHHSLSKSVETYYQESGRAGRDGLPSRCVLYYRPTDVTRQSCMVFAEASGLENLYAMVAYCQ-SRQKCRREAIFRHFGE----PLQPCNGMCDNCGDAGTVRK--LDITDKAEALVALLRALAGKEKRATLLQLCEQWKDKA----------------------------------------------VGKEDKERAVVQLLLDGVLAEEFGHTAFATNSYITRGPSLPLLEHGHLKVFLEVSDSS 590
BLAST of NO16G01730 vs. NCBI_GenBank
Match: PPR85652.1 (hypothetical protein GOBAR_AA35046 [Gossypium barbadense]) HSP 1 Score: 418.7 bits (1075), Expect = 4.200e-113 Identity = 239/568 (42.08%), Postives = 336/568 (59.15%), Query Frame = 0 Query: 61 DWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWMEVEISS 628 DWS SF W +AE I+ VFGI++ +RP+Q+EIINA +S D V+M GGGKSLC+QLPA+L +G++LV+SPL+SLI DQ ML S+E+ + + ++ L+L+YVTPEKV SK MS LEK + A RL +DEAHCCS G+DFRP+Y+ L IL+ FP+VP++A+TATAT +V D+ ++L + K F S NRPNLFY VQ K + V + +++ +P ++SGIVYC S+KECE VA++L GI+ YHA +D +++V RW+ +KLQ++V T+AFGMGINKPDVRFVIH S+ KS+E Y QESGRAGRDG S CLL +R++D+ RQ+S+V HE GLQ L +V+Y Q S R CRR R E P + C G CD C+ K + + + LI L+R + K++R T QL D + + +E +E L+ QL+++ +L E++ TAY+ N+YV VG RA V +G+ + M+V +S Sbjct: 65 DWSR-SFDWDSQAEDIRFNVFGISS-YRPNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAIL-RQGIALVVSPLLSLIQDQVMGLVASGIPAH-MLTSTTSKEDEKFIYKALEKGEEDLKLLYVTPEKVSKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATMKVQNDLIEMLHIPKCVKFVSTVNRPNLFYMVQEKSSVGKIVVDEIAKYIKESYPNKESGIVYCFSRKECEQVASELCERGISADYYHADMDVNAREKVHMRWSKNKLQIIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLFFRSADMPRQSSMVFHENSGLQNLYDIVQYCQ-SKRQCRRSAFFRHFAE----PLQECNGMCDSCAFSSEIKEVDASGHSKLLISLVREMQEKDQRVTMLQLVDRVKNKQKQLGSSISSYTTSNKYDFEL---------------------------KREEMEQLVVQLILDRVLKEEFQHTAYATNSYVTVGPRANQVLQGKKIIKMDVSSTS 596
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_013088760.1 (PREDICTED: ATP-dependent DNA helicase Q1-like, partial [Biomphalaria glabrata]) HSP 1 Score: 417.9 bits (1073), Expect = 7.100e-113 Identity = 247/611 (40.43%), Postives = 345/611 (56.46%), Query Frame = 0 Query: 14 DELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETVEAQDV----AADVDWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHPRQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCS-GEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQV 620 +EL VES+LS +E +L+ L + +S+L++R+ LK +E ++ + W FPW+ E + K VF + R Q++ +NATL++ D ++M TGGGKSLCFQLPA++ KGL+LVISPL+SL+ DQ + A S+EE+ + M + + L+L+YVTPEK+ SK M+ LEK L R V+DE HCCS G+DFRP+Y+ L IL++ FP+ PIL +TATAT VL DV IL + + F++ FNRPNLFY VQ KPA + + ++ + + QSGI+YC S+K+ E VA L GI G YHA + A+ + V R+W + +QVVVAT+AFGMGI+KPDVRFVIH SI KSIEN QESGRAGRDGQ S C++LYR +DV RQ+S+V E+ GL L +V+Y + CRR I+R GE + C CD C + + K +VT LI +L AA ++R T +L D W K+ E ++ QLVVE L ED+H TAYS Y++ G +A ++ G ++V Sbjct: 3 NELCKVESELSLLEVELQELLERQSSLVNRRAELKLILEQSELDNQQNKHIKWEGTDFPWTAELDNKLKSVFKL-NELRSMQRQTMNATLAKEDCLLIMPTGGGKSLCFQLPAVI-SKGLTLVISPLVSLMEDQQMALELLKIPSAI-FTSATSKEEAKHIQEDMVNTKGHLKLLYVTPEKLAKSKRFMNRLEKSYAINHLTRIVIDEVHCCSQWGHDFRPDYKFLGILKRQFPNAPILGLTATATINVLEDVKKILNIPRALLFRASFNRPNLFYEVQEKPATQKDTMDKIFHLINKRFRGQSGIIYCFSRKDSEEVATDLKSRGIKAGCYHADMTAQSRSAVHRKWLSGDVQVVVATVAFGMGIDKPDVRFVIHHSISKSIENLYQESGRAGRDGQRSDCIVLYRLADVTRQSSMVFTEQTGLPNLYGIVQYC-IDVAKCRRSLIARHFGE--VWESAQCDKMCDHCDRAQCQVKVKDVTHYCKDLISILDAAAATQQRVTSAKLLDAWYGRGPAGVKVKSIAAPSLA---------------------------------KDQAERIVAQLVVEGYLREDFHFTAYSTICYIIPGPKAKLLRNGGVKV 574
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_024537020.1 (mediator of RNA polymerase II transcription subunit 34 isoform X4 [Selaginella moellendorffii]) HSP 1 Score: 416.8 bits (1070), Expect = 1.600e-112 Identity = 247/623 (39.65%), Postives = 350/623 (56.18%), Query Frame = 0 Query: 8 SKRAAADELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETV------EAQDV-AADVDWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWME 623 ++ A L V+++L EV+ Q+ L D ++ LL + L++ + E D+ + DWS +F W EA + VFGI+ +R +Q+EI+NA +S + VVM GGGKSLC+QLPALL G++LV+SPL+SLI DQ ML S+EE ++ R ++ LR++YVTPEK+ SK MS LEK N A RL +DEAHCCS G+DFRP+Y+ L IL+K FP VP++A+TATAT +V RD+ ++LQ+ E F S NRPNLFY V+ K + + + F++ +P +SGIVYC S+KECE VA L I+ YHA +D+ L+ V RRW++++LQV+V T+AFGMGINKPDVRFVIH ++ KS+E Y QESGRAGRDG S C+L +R +DV RQ+ +V E GLQ L + Y Q R CRR + E + C G CD C+ E +VT L++ + +A +K+ T QL DLW + R K+ E ++ QL+++ L ED+ TAY+ NAYV G A ++ +G+ +V +E Sbjct: 2 AEEEVALRLEAVDAELQEVQAQIAVLCDRQARLLEEQAELRQLIDCCRASEEDDIQIIEQDWSG-NFEWDNEASNLLLNVFGIST-YRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALL-RPGIALVVSPLLSLIQDQ-VMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEKCNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQEMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRFVIHHTLSKSLETYYQESGRAGRDGLPSRCVLFFRPADVPRQSCMVFSENTGLQNLYAMARYCQSKQR-CRRAAFFQYFAE----QVQECNGMCDTCAFENDVVEKDVTEYGKSLVQSVMDVAESDKKTTLLQLVDLWRSQLRQAGDKE---------------------------------------MSKDDAEQIILQLILDGTLREDFQHTAYATNAYVKAGSAARLILQGKRKVILE 576
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_024537018.1 (mediator of RNA polymerase II transcription subunit 34 isoform X2 [Selaginella moellendorffii]) HSP 1 Score: 416.8 bits (1070), Expect = 1.600e-112 Identity = 247/623 (39.65%), Postives = 350/623 (56.18%), Query Frame = 0 Query: 8 SKRAAADELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETV------EAQDV-AADVDWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWME 623 ++ A L V+++L EV+ Q+ L D ++ LL + L++ + E D+ + DWS +F W EA + VFGI+ +R +Q+EI+NA +S + VVM GGGKSLC+QLPALL G++LV+SPL+SLI DQ ML S+EE ++ R ++ LR++YVTPEK+ SK MS LEK N A RL +DEAHCCS G+DFRP+Y+ L IL+K FP VP++A+TATAT +V RD+ ++LQ+ E F S NRPNLFY V+ K + + + F++ +P +SGIVYC S+KECE VA L I+ YHA +D+ L+ V RRW++++LQV+V T+AFGMGINKPDVRFVIH ++ KS+E Y QESGRAGRDG S C+L +R +DV RQ+ +V E GLQ L + Y Q R CRR + E + C G CD C+ E +VT L++ + +A +K+ T QL DLW + R K+ E ++ QL+++ L ED+ TAY+ NAYV G A ++ +G+ +V +E Sbjct: 2 AEEEVALRLEAVDAELQEVQAQIAVLCDRQARLLEEQAELRQLIDCCRASEEDDIQIIEQDWSG-NFEWDNEASNLLLNVFGIST-YRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALL-RPGIALVVSPLLSLIQDQ-VMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEKCNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQEMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRFVIHHTLSKSLETYYQESGRAGRDGLPSRCVLFFRPADVPRQSCMVFSENTGLQNLYAMARYCQSKQR-CRRAAFFQYFAE----QVQECNGMCDTCAFENDVVEKDVTEYGKSLVQSVMDVAESDKKTTLLQLVDLWRSQLRQAGNHISGVYGHILQSQTGDKE-----------------------MSKDDAEQIILQLILDGTLREDFQHTAYATNAYVKAGSAARLILQGKRKVILE 592
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_012476949.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 34 [Gossypium raimondii] >KJB26895.1 hypothetical protein B456_004G265100 [Gossypium raimondii]) HSP 1 Score: 413.7 bits (1062), Expect = 1.300e-111 Identity = 238/568 (41.90%), Postives = 335/568 (58.98%), Query Frame = 0 Query: 61 DWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWMEVEISS 628 DWS SF W +AE I+ VFGI++ +RP+Q+EIINA +S D V+M GGGKSLC+QLPA+L +G++LV+SPL+SLI DQ ML S+E+ + + ++ L+L+YVTPEKV SK MS LEK + A RL +DEAHCCS G+DFRP+Y+ L IL+ FP+VP++A+TATAT +V D+ ++L + K F S NRPNLFY V+ K + V + +++ +P ++SGIVYC S+KECE VA++L GI+ YHA +D +++V RW+ +KLQV+V T+AFGMGINKPDVRFVIH S+ KS+E Y QESGRAGRDG S CLL +R++D+ RQ+++V HE GLQ L +V+Y Q S R CRR R E P + C G CD C+ K + + + LI L+R + K++R T QL D + + +E +E L+ QL+++ +L E++ TAY+ N+YV VG RA V G+ + M+V +S Sbjct: 65 DWSR-SFDWDSQAEDIRFNVFGISS-YRPNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAIL-RQGIALVVSPLLSLIQDQVMGLVASGIPAR-MLTSTTSKEDEKFIYKALEKGEEGLKLLYVTPEKVSKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATMKVQNDLIEMLHIPKCVKFVSTVNRPNLFYMVREKSSVGKIVVDEIAKYIKESYPNKESGIVYCFSRKECEQVASELCERGISADYYHADMDVNAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLFFRSADMPRQSTMVFHENSGLQNLYDMVQYCQ-SKRQCRRSAFFRHFAE----PLQECNGMCDNCAFSSEIKEVDASGHSKLLISLVREMQEKDQRVTMLQLVDRVKNKQKQLDFEL----------------------------------------KREEMEQLVVQLILDRVLKEEFQHTAYATNSYVTVGPRANQVMLGKKIIKMDVTSTS 583
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_024516913.1 (mediator of RNA polymerase II transcription subunit 34 isoform X2 [Selaginella moellendorffii]) HSP 1 Score: 413.3 bits (1061), Expect = 1.800e-111 Identity = 246/623 (39.49%), Postives = 349/623 (56.02%), Query Frame = 0 Query: 8 SKRAAADELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETV------EAQDV-AADVDWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWME 623 ++ A L V+++L V+ Q+ L D ++ LL + L++ + E D+ + DWS +F W EA + VFGI+ +R +Q+EI+NA +S + VVM GGGKSLC+QLPALL G++LV+SPL+SLI DQ ML S+EE ++ R ++ LR++YVTPEK+ SK MS LEK N A RL +DEAHCCS G+DFRP+Y+ L IL+K FP VP++A+TATAT +V RD+ ++LQ+ E F S NRPNLFY V+ K + + + F++ +P +SGIVYC S+KECE VA L I+ YHA +D+ L+ V RRW++++LQV+V T+AFGMGINKPDVRFVIH ++ KS+E Y QESGRAGRDG S C+L +R +DV RQ+ +V E GLQ L + Y Q R CRR + E + C G CD C+ E +VT L++ + +A +K+ T QL DLW + R K+ E ++ QL+++ L ED+ TAY+ NAYV G A ++ +G+ +V +E Sbjct: 2 AEEEVALRLEAVDAELQGVQAQIAVLCDRQARLLEEQAELRQLIDCCRASEEDDIQIIEQDWSG-NFEWDNEASNLLLNVFGIST-FRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALL-RPGIALVVSPLLSLIQDQ-VMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEKCNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQEMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRFVIHHTLSKSLETYYQESGRAGRDGLPSRCVLYFRPADVPRQSCMVFSENTGLQNLYAMARYCQSKQR-CRRAAFFQYFAE----QVQECNGMCDTCAFENDVVEKDVTEYGKSLVQSVMDVAESDKKTTLLQLVDLWRSQLRQAGNHMSGVYGHILQSQTGDKE-----------------------MSKDDAEQIILQLILDGTLREDFQHTAYATNAYVKAGSAARLILQGKRKVILE 592
BLAST of NO16G01730 vs. NCBI_GenBank
Match: XP_024516916.1 (mediator of RNA polymerase II transcription subunit 34 isoform X4 [Selaginella moellendorffii]) HSP 1 Score: 413.3 bits (1061), Expect = 1.800e-111 Identity = 246/623 (39.49%), Postives = 349/623 (56.02%), Query Frame = 0 Query: 8 SKRAAADELRLVESKLSEVERQLRALKDERSTLLSRKVVLKETV------EAQDV-AADVDWSSDSFPWSGEAERIKKEVFGIAAPWRPDQKEIINATLSEMDTFVVMRTGGGKSLCFQLPALLPDKGLSLVISPLISLISDQXXXXXXXXXXXXVMLAGAMSREESNDVLRRMKDPRSPLRLVYVTPEKVLTSKLLMSTLEKLNEAQRLDRFVVDEAHCCSSMGNDFRPEYQKLSILRKLFPHVPILAVTATATPQVLRDVTDILQMSKVEFFKSPFNRPNLFYRVQPKPAGMDEAVAAVWSFLRAQHP-RQSGIVYCLSQKECETVAAKLALLGIATGVYHAGLDAELKDRVLRRWTADKLQVVVATIAFGMGINKPDVRFVIHFSIPKSIENYLQESGRAGRDGQISTCLLLYRASDVVRQASLVIHERVGLQKLRTVVEYAQLSGRVCRRIPISRALGEGGLVPQEACQGHCDVCSGEVRKKTANVTRATVGLIKLLRGLAAKEKRCTHRQLADLWLKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVLQDKETVELLLNQLVVESILGEDYHATAYSINAYVVVGYRAAVVERGEIQVWME 623 ++ A L V+++L V+ Q+ L D ++ LL + L++ + E D+ + DWS +F W EA + VFGI+ +R +Q+EI+NA +S + VVM GGGKSLC+QLPALL G++LV+SPL+SLI DQ ML S+EE ++ R ++ LR++YVTPEK+ SK MS LEK N A RL +DEAHCCS G+DFRP+Y+ L IL+K FP VP++A+TATAT +V RD+ ++LQ+ E F S NRPNLFY V+ K + + + F++ +P +SGIVYC S+KECE VA L I+ YHA +D+ L+ V RRW++++LQV+V T+AFGMGINKPDVRFVIH ++ KS+E Y QESGRAGRDG S C+L +R +DV RQ+ +V E GLQ L + Y Q R CRR + E + C G CD C+ E +VT L++ + +A +K+ T QL DLW + R K+ E ++ QL+++ L ED+ TAY+ NAYV G A ++ +G+ +V +E Sbjct: 2 AEEEVALRLEAVDAELQGVQAQIAVLCDRQARLLEEQAELRQLIDCCRASEEDDIQIIEQDWSG-NFEWDNEASNLLLNVFGIST-FRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALL-RPGIALVVSPLLSLIQDQ-VMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEKCNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQEMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRFVIHHTLSKSLETYYQESGRAGRDGLPSRCVLYFRPADVPRQSCMVFSENTGLQNLYAMARYCQSKQR-CRRAAFFQYFAE----QVQECNGMCDTCAFENDVVEKDVTEYGKSLVQSVMDVAESDKKTTLLQLVDLWRSQLRQAGDKE---------------------------------------MSKDDAEQIILQLILDGTLREDFQHTAYATNAYVKAGSAARLILQGKRKVILE 576 The following BLAST results are available for this feature:
BLAST of NO16G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01730 ID=NO16G01730|Name=NO16G01730|organism=Nannochloropsis oceanica|type=gene|length=2894bpback to top protein sequence of NO16G01730.1 >NO16G01730.1-protein ID=NO16G01730.1-protein|Name=NO16G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=821bpback to top Synonyms
Publications
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