NO16G01700, NO16G01700 (gene) Nannochloropsis oceanica

Overview
NameNO16G01700
Unique NameNO16G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr16:508509..509423 +

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Properties
Property NameValue
DescriptionProteasome a type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:508509..509423 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR035144Proteasome_alpha1
IPR001353Proteasome_sua/b
IPR000426Proteasome_asu_N
Homology
BLAST of NO16G01700 vs. NCBI_GenBank
Match: EWM23962.1 (proteasome a type [Nannochloropsis gaditana])

HSP 1 Score: 312.8 bits (800), Expect = 1.200e-81
Identity = 162/278 (58.27%), Postives = 204/278 (73.38%), Query Frame = 0
Query:   19 YDAFSTRIYDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDVYDTERHRIVPYALDLLVAGYD------SQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYLLGRLGEPQASXXXXXXXXLRRLATMVLRALLMTIVEEEGRGGEGRDREEEHQSVEEDISMVVIGKEISYTPLIVAWDPHRRRMEVRIPAALAAVLEDEE 291
            YDAFSTRIYDPKGRVLQLEYALEA++KGGA VGAV GD  +LASW PR+SRRQ P  +Q ALGLW  D ++A+AGTGLATD++AL ++AR+EC AHRY+H+SPLRVGRL   LA++++DTERHRI+PYA+DLLVAGYD       +G P LFK+ PAGVI+SFRACAVGR AE   AYL  +L +   +        LR  AT+VL+AL+ ++  E+     GR  +E    +EED+S+ V+GK + YT L V+WDP  RRM+V IP ALA   E +E
Sbjct:   39 YDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKL-QVSLAGDGNDGKSLREHATVVLQALVRSMTGED----SGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE 311          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_023271329.1 (proteasome subunit alpha type-1-like, partial [Seriola lalandi dorsalis])

HSP 1 Score: 109.4 bits (272), Expect = 2.000e-20
Identity = 64/166 (38.55%), Postives = 96/166 (57.83%), Query Frame = 0
Query:   27 YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLA-QDVYDTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            + P GR+ Q+EYA+EA   G AA+G   G  AV+A     T +R A         +++ D ++ +A  GL  D   L +  R EC+ HRYV++ P++VGRLV ++A +    T+R    PY + LLVAG D+Q GP L++  P+GV   +   A+G R++ GR YL
Sbjct:    1 WSPAGRIHQIEYAMEAVNVGSAAIGLRSGKYAVVA-----TLKRSASELSSYQKKIFKVDDNIGIAIAGLVADARVLAKFMRTECINHRYVYDEPMQVGRLVLKVADKSQVGTQRIGQRPYGVGLLVAGADAQ-GPHLYETKPSGVYFEYVGMAIGARSQAGRTYL 160          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_004367445.1 (20S proteasome alpha subunit F, putative [Acanthamoeba castellanii str. Neff] >ELR20420.1 20S proteasome alpha subunit F, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 107.1 bits (266), Expect = 1.000e-19
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = 0
Query:   19 YDAFSTRIYDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLA-QDVYDTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            YD+  T  + P+GR+ Q+E+A+EA K+G A VG      AVL   T + S  Q  + Q+    +++ D H+A+A  GL +D   L    + E L H+YV+ESP++VGRLV R+A +   +T+R+   PY + LLVAGYD Q G  L++  P+G    ++A A+G RA+  R YL
Sbjct:    6 YDSDIT-TWSPQGRLYQIEFAMEAVKQGSACVGLRSKTHAVLV--TLKRSSGQLASYQKK---IFKIDDHMAIAIAGLTSDARVLCRYMQTEALNHKYVYESPVQVGRLVLRVADKSQKNTQRYGSRPYGVGLLVAGYD-QTGAHLYETCPSGNYFEYKAQAIGARAQSARTYL 172          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_002947343.1 (20S proteasome alpha subunit F [Volvox carteri f. nagariensis] >EFJ51391.1 20S proteasome alpha subunit F [Volvox carteri f. nagariensis])

HSP 1 Score: 106.3 bits (264), Expect = 1.700e-19
Identity = 81/250 (32.40%), Postives = 128/250 (51.20%), Query Frame = 0
Query:   17 VFYDAFSTRI--YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDV-YDTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYLLGRLGEPQASXXXXXXXXLRRLATMVLRALLMTIVEEEGRGGEGRDREEEHQSVEEDISMVVIGKEISYTPL 264
            +F + + T +  + P+GR+ Q+EYA+EA K+G   VG       VLA  T + S+ +  + Q+    +++ D H+ +A  GL  D  +L +  R+EC+ HRYV+ES + VGRLV  +A      T+R    PY + LLVAG DSQ GP L+   P+G    ++A A+G R++  + YL       +          L  L    LRAL  ++ E E                + + S+ V+GK++S+T L
Sbjct:    1 MFRNQYDTDVTTWSPQGRLFQVEYAMEAVKQGSCTVGLKSDTHVVLA--TLKRSQSELSSFQRK---VFKIDDHLGIAIAGLTGDGRSLCKYMRNECINHRYVYESSMPVGRLVRLVADKAQVCTQRSWKRPYGVGLLVAGVDSQ-GPHLYSTCPSGNYYEYKAMAIGSRSQAAKTYL-------EKHFETFPGANLDELVQHSLRALQASLSEGE--------------LTDANCSVAVVGKDLSFTVL 223          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: PRP83361.1 (hypothetical protein PROFUN_09389 [Planoprotostelium fungivorum])

HSP 1 Score: 105.5 bits (262), Expect = 2.900e-19
Identity = 63/167 (37.72%), Postives = 99/167 (59.28%), Query Frame = 0
Query:   26 IYDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLA-QDVYDTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            I+ P+GR+ Q+EYA+EA K+G A+VG      AV+A+   R S       Q+    ++R D H+A++ +GL  D   L +  R+ECL H++V+E P+ V +LV +LA +    T++    PY + LLV GYD + GP L++  P+G    ++A A+G R +  R YL
Sbjct:   12 IWSPQGRIHQIEYAMEAVKQGSASVGLKSKTHAVVAA-VKRASSELGSNQQK----VFRIDDHLAISMSGLTADGRVLTKYLRNECLNHKFVYEQPMPVSKLVVQLADKSQVHTQQSGRRPYGVGLLVIGYD-ENGPHLYETSPSGNYYDYKAQAIGNRFQSARTYL 172          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: PSC76956.1 (20S proteasome alpha subunit F [Micractinium conductrix])

HSP 1 Score: 105.1 bits (261), Expect = 3.800e-19
Identity = 63/179 (35.20%), Postives = 105/179 (58.66%), Query Frame = 0
Query:   16 SVFYDAFSTRI--YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDVY-DTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            ++F + + T +  + P+GR+ Q+EYA+EA K+G AAVG   G+ AVLA     T +R           +++ D H+ +A +GL  D   L    R+ECL HR+V++SP+ +GR+V ++A      T+R    PY + L+VAG+D + GP +F   P+G    ++A A+G R++  + Y+
Sbjct:  225 AMFRNQYDTDVTTWSPQGRIFQIEYAMEAVKQGSAAVGLKSGEHAVLA-----TLKRAPSDLSAYQRKIFKIDDHMGIAISGLTADGRILCRYMRNECLNHRFVYDSPMPLGRMVRQVADRAQAGTQRSWKRPYGVGLIVAGHD-ESGPRIFYNCPSGNYYDYKAFAMGARSQAAKTYM 397          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_002770938.1 (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >EER02754.1 proteasome A type subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 104.8 bits (260), Expect = 5.000e-19
Identity = 62/168 (36.90%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   27 YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDVYDTERHRIV---PYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            + P+GR+ Q+EYA+EA K+G A V   G   A+L ++     RRQ+  A      ++R D H+ VA +GL  D   +    R ECL+H++ +++P+ VGRLV ++   V   E+ ++    PY + LLVAGYD + GP +++  P+G I  + A A+G R++  R YL
Sbjct:   13 WSPQGRIFQIEYAMEAVKQGTAVVALRGKKHAILCAF----RRRQSDLASYQQ-KIFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIG--VESQEKTQVASKRPYGVGLLVAGYD-ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYL 172          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_002778255.1 (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >EER10050.1 proteasome A type subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 104.8 bits (260), Expect = 5.000e-19
Identity = 62/168 (36.90%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   27 YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDVYDTERHRIV---PYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            + P+GR+ Q+EYA+EA K+G A V   G   A+L ++     RRQ+  A      ++R D H+ VA +GL  D   +    R ECL+H++ +++P+ VGRLV ++   V   E+ ++    PY + LLVAGYD + GP +++  P+G I  + A A+G R++  R YL
Sbjct:   13 WSPQGRIFQIEYAMEAVKQGTAVVALRGKKHAILCAF----RRRQSDLASYQQ-KIFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIG--VESQEKTQVASKRPYGVGLLVAGYD-ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYL 172          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_002786174.1 (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >EER17970.1 proteasome A type subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 104.8 bits (260), Expect = 5.000e-19
Identity = 62/168 (36.90%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   27 YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDVYDTERHRIV---PYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            + P+GR+ Q+EYA+EA K+G A V   G   A+L ++     RRQ+  A      ++R D H+ VA +GL  D   +    R ECL+H++ +++P+ VGRLV ++   V   E+ ++    PY + LLVAGYD + GP +++  P+G I  + A A+G R++  R YL
Sbjct:   13 WSPQGRIFQIEYAMEAVKQGTAVVALRGEKHAILCAF----RRRQSDLASYQQ-KIFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIG--VESQEKTQVASKRPYGVGLLVAGYD-ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYL 172          
BLAST of NO16G01700 vs. NCBI_GenBank
Match: XP_011396562.1 (Proteasome subunit alpha type-1-A [Auxenochlorella protothecoides] >KFM23688.1 Proteasome subunit alpha type-1-A [Auxenochlorella protothecoides])

HSP 1 Score: 104.8 bits (260), Expect = 5.000e-19
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 0
Query:   27 YDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESPLRVGRLVTRLAQDV-YDTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYL 192
            + P+GR+ Q+EYA+EA K+G AAVG    D+AV+A     T +R           +++ D H+ +A +GL  D   L    R+ECL HR+V +SP+ +GRLV +LA      T+R    PY + L+VAG D + GP +F   P+G    +RA A+G R++  + Y+
Sbjct:  506 WSPQGRIFQIEYAMEAVKQGSAAVGLKSKDVAVMA-----TLKRAPSELSSYQRKVFKIDDHMGIAISGLTADGRILCRYMRNECLNHRFVFDSPMPLGRLVRQLADKAQVGTQRSWKRPYGVGLIVAGVD-ESGPHIFYNCPSGNYYDYRAFAMGARSQAAKTYM 665          
The following BLAST results are available for this feature:
BLAST of NO16G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23962.11.200e-8158.27proteasome a type [Nannochloropsis gaditana][more]
XP_023271329.12.000e-2038.55proteasome subunit alpha type-1-like, partial [Ser... [more]
XP_004367445.11.000e-1940.2320S proteasome alpha subunit F, putative [Acantham... [more]
XP_002947343.11.700e-1932.4020S proteasome alpha subunit F [Volvox carteri f. ... [more]
PRP83361.12.900e-1937.72hypothetical protein PROFUN_09389 [Planoprotosteli... [more]
PSC76956.13.800e-1935.2020S proteasome alpha subunit F [Micractinium condu... [more]
XP_002770938.15.000e-1936.90proteasome A type subunit, putative [Perkinsus mar... [more]
XP_002778255.15.000e-1936.90proteasome A type subunit, putative [Perkinsus mar... [more]
XP_002786174.15.000e-1936.90proteasome A type subunit, putative [Perkinsus mar... [more]
XP_011396562.15.000e-1937.95Proteasome subunit alpha type-1-A [Auxenochlorella... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003155NSK003155Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01700.1NO16G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593603gene_6052Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g40gene6510Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01700.1NO16G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01700 ID=NO16G01700|Name=NO16G01700|organism=Nannochloropsis oceanica|type=gene|length=915bp
ATGGCTTCCCTCACGGCACCGAGCGGCCCTGCTGGCCCGGCACCCAGTGT
CTTTTATGACGCCTTTTCTACGCGCATTTACGACCCCAAAGGTCGAGTCC
TCCAGCTGGAGTACGCCCTCGAGGCTTCGAAGAAAGGTGGTGCGGCAGTC
GGGGCTGTGGGAGGAGATTTGGCCGTGCTGGCCAGCTGGACTCCACGGAC
GTCGCGACGACAGGCACCCGCAGCGCAGCAAGCCGCTTTAGGGCTCTGGC
GCGGGGACGCCCACGTAGCTGTGGCTGGAACAGGCTTGGCTACTGATATA
CTGGCTCTGGTGGAAGTTGCGCGGCATGAGTGTTTGGCGCATAGATACGT
GCATGAGTCTCCTTTGCGCGTGGGCCGGCTGGTGACGCGGCTTGCGCAAG
ATGTATACGACACAGAGCGACATCGCATCGTGCCGTACGCGTTGGATTTG
CTTGTGGCAGGGTATGACTCTCAAGGAGGGCCTTCTTTGTTCAAAGTGGG
TCCTGCAGGTGTAATTGAATCTTTTCGCGCCTGTGCAGTTGGCCGCCGTG
CGGAACAGGGACGTGCTTACCTGTTGGGGCGTTTGGGGGAGCCGCAAGCC
AGTGAGCCAGGCGCCAGCCATCCGGGCTTGCGACGACTTGCTACCATGGT
ACTGCGTGCACTCTTAATGACTATTGTCGAAGAAGAGGGGAGGGGGGGTG
AGGGCCGCGATCGAGAGGAGGAGCATCAGAGCGTGGAGGAAGACATTTCG
ATGGTGGTGATTGGAAAGGAGATTTCTTACACGCCACTCATTGTTGCTTG
GGACCCGCACCGACGGCGAATGGAAGTGCGCATCCCAGCCGCCCTTGCTG
CTGTTCTTGAAGATGAAGAATGGAGGAGTATAGACCAGGCGGACGGTTCC
ACGCCACCGCGGTGA
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protein sequence of NO16G01700.1

>NO16G01700.1-protein ID=NO16G01700.1-protein|Name=NO16G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MASLTAPSGPAGPAPSVFYDAFSTRIYDPKGRVLQLEYALEASKKGGAAV
GAVGGDLAVLASWTPRTSRRQAPAAQQAALGLWRGDAHVAVAGTGLATDI
LALVEVARHECLAHRYVHESPLRVGRLVTRLAQDVYDTERHRIVPYALDL
LVAGYDSQGGPSLFKVGPAGVIESFRACAVGRRAEQGRAYLLGRLGEPQA
SEPGASHPGLRRLATMVLRALLMTIVEEEGRGGEGRDREEEHQSVEEDIS
MVVIGKEISYTPLIVAWDPHRRRMEVRIPAALAAVLEDEEWRSIDQADGS
TPPR*
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Synonyms
Publications