NO16G01680, NO16G01680 (gene) Nannochloropsis oceanica

Overview
NameNO16G01680
Unique NameNO16G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1530
Alignment locationchr16:497820..499349 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:497820..499349 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01680 vs. NCBI_GenBank
Match: EWM23987.1 (hypothetical protein Naga_100027g38 [Nannochloropsis gaditana])

HSP 1 Score: 334.3 bits (856), Expect = 4.800e-88
Identity = 191/390 (48.97%), Postives = 243/390 (62.31%), Query Frame = 0 
Query:    4 EVVAQTSVHTSLDTHEELLSTTNAILQSAKSRRW--FRGGGNEKELCLIAAAQYEAQAKELRVAISLLGPSSINNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRASLLLGAVKGFLFRRLIDGNLDDALQSVKDIQTLADCLKTQAELDVGHWTTGGGYVKPEELELLYLIRQIILCEGEKARYYEKHPTLDRHDESELKGESVDVCKRLLRYKSLFHIRSSRWFSVYCDDYQVAADPHFPQSKPNSFHVQCFFDGTIREEDVANNTMGARIRAAQKKRRFRLPSPFRDSTSRWGT--TTSKHQ------FSFQGFLTQMTSSFFVLSQMLTPTFFFHRLIQRGPKGLAVCAMDEESKEADAYV 384
            E +A     + +D HEELLS T+ IL+ AKSR W  F   G EK+LCL  AAQYEAQAKELR AI+LL  +S N+                                                     +  +++L  +K FLF+R+IDG+L+DA ++ + I+ LA CLKTQ+ELD+ HW TGGGYVKPEE++LLYL+RQII+CEGEK R+++KHP L+RH+ESEL+GESVD+ KRLLRYKSLFHI++  WF+VY +DYQVAADPHFP+S+ N FHVQCFFDGTIREED+  N++  RI+ A+ KRR  L S  R  T  WG+  T+S+        FS QGF +QMTSSFF L QM  P+ FF     R  K L V     E K +D  V
Sbjct:    6 EALAHAFKPSLVDVHEELLSKTDHILEVAKSRGWGIFGSQGTEKDLCLYEAAQYEAQAKELRAAIALLSSTSNNDS--------MAGAKSKKLIPTSETVLENGDLKLTATEQRQEEVDTPITNVTAQSSTNIILKQIKRFLFKRIIDGDLEDAHRTAERIEVLAKCLKTQSELDLAHWKTGGGYVKPEEVQLLYLVRQIIICEGEKERFHDKHPNLNRHNESELQGESVDISKRLLRYKSLFHIQTGSWFTVYDNDYQVAADPHFPESRANPFHVQCFFDGTIREEDLQRNSIRERIQEAENKRR-PLFSGLRSVT--WGSKFTSSRSMDGDDSVFSLQGFWSQMTSSFFFLGQMFIPSSFF-----RSIKKLEVDLSRTEGKSSDLQV 379
The following BLAST results are available for this feature:
BLAST of NO16G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23987.14.800e-8848.97hypothetical protein Naga_100027g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003153NSK003153Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01680.1NO16G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593598gene_6050Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g38gene6508Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01680.1NO16G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01680 ID=NO16G01680|Name=NO16G01680|organism=Nannochloropsis oceanica|type=gene|length=1530bp
AAGCGAGCGCCCACCCATCAGAATATTCACGTCAGAAGGCCTGAGCACGA
TCACGGCATCGACCACACCCTCGTCCAGCAGCGACTATGGCGACGGAGGT
GGTTGCCCAAACCTCTGTGCACACGAGCCTTGACACCCACGAAGAGTTGC
TGAGCACGACCAATGCCATCCTCCAAAGTGCGAAGTCCCGACGATGGTTT
CGTGGAGGCGGGAACGAGAAGGAGCTGTGTTTGATCGCAGCCGCCCAATA
TGAAGCGCAGGCAAAAGAGCTTCGCGTCGCAATCAGTCTCTTGGGACCCT
CGAGTATTAACAACGGCATCAGCAGTGGTAGCAACAGTAACAGTAGCATG
AACAGCAAGGTACCTACAGTGGACACGATCCCCTCGTCGGAGGAGCAGGG
ACGGAAAACGGATGAAGCATTGGAGGAGGGACAAGAAAGAGAGCAAGAAC
AGGCCACGGCCCAGGCGGCTCCTACGCGGGCGAGTCTCCTTCTCGGCGCC
GTCAAAGGCTTCTTGTTCCGCCGCCTCATCGACGGTAATTTGGACGATGC
CTTGCAAAGTGTGAAAGACATTCAAACCCTTGCGGACTGTCTCAAGACTC
AAGCGGAGCTGGACGTGGGGCATTGGACGACTGGAGGGGGCTACGTGAAA
CCCGAGGAGTTGGAATTGCTCTATTTGATCCGACAGATAATTTTGTGCGA
GGGAGAAAAGGCCCGATACTACGAGAAGCACCCGACGTTGGACCGGCACG
ATGAGAGCGAGCTCAAGGGAGAGTCCGTCGACGTGTGCAAGCGCCTTCTG
CGGTATAAGTCGCTTTTTCATATTCGCAGCAGCCGTTGGTTCAGCGTTTA
TTGTGACGACTACCAGGTGGCGGCCGATCCCCATTTTCCCCAGTCCAAGC
CCAATTCATTTCATGTGCAATGCTTCTTTGACGGCACTATTCGGGAGGAA
GACGTGGCGAACAACACGATGGGCGCACGGATCCGAGCGGCACAGAAAAA
GCGCCGATTCCGTCTTCCCTCCCCCTTTCGCGACAGCACCAGTCGGTGGG
GGACTACCACCAGCAAACACCAATTCTCGTTCCAAGGGTTCTTGACGCAA
ATGACTTCCTCCTTCTTTGTCTTGAGCCAGATGTTGACGCCAACATTCTT
TTTCCATCGCTTAATCCAGCGCGGCCCGAAGGGGTTGGCTGTGTGCGCGA
TGGACGAAGAGAGCAAGGAGGCGGACGCTTATGTGTAAGGAGCGCTGTTT
GAAGAGGGAGAGGAGGGAGATAATTGTCCTCGAGCCAAATAAAACGGCGC
ACAGTGAAATTCAGCAAGGAAATGAAGAAGAGATGGGTACACTTAATTGA
TAAAGTGCAAAAATATGCCCACGAGTATGTGTGGATTGAATGACAGACTG
TCCTAAAGGCCAAGAAGGAAGAAGGAAACATGACAGGGATGGTGAGAGAG
AAAGAGAAAAGTTAAGCATGGAGTGAAAATGCCCTCACAATTTCCGAAAG
CAAAGCACTAATAGCACCACACCAGCGTGA
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protein sequence of NO16G01680.1

>NO16G01680.1-protein ID=NO16G01680.1-protein|Name=NO16G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MATEVVAQTSVHTSLDTHEELLSTTNAILQSAKSRRWFRGGGNEKELCLI
AAAQYEAQAKELRVAISLLGPSSINNGISSGSNSNSSMNSKVPTVDTIPS
SEEQGRKTDEALEEGQEREQEQATAQAAPTRASLLLGAVKGFLFRRLIDG
NLDDALQSVKDIQTLADCLKTQAELDVGHWTTGGGYVKPEELELLYLIRQ
IILCEGEKARYYEKHPTLDRHDESELKGESVDVCKRLLRYKSLFHIRSSR
WFSVYCDDYQVAADPHFPQSKPNSFHVQCFFDGTIREEDVANNTMGARIR
AAQKKRRFRLPSPFRDSTSRWGTTTSKHQFSFQGFLTQMTSSFFVLSQML
TPTFFFHRLIQRGPKGLAVCAMDEESKEADAYV*
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Synonyms
Publications