NO16G01650, NO16G01650 (gene) Nannochloropsis oceanica

Overview
NameNO16G01650
Unique NameNO16G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr16:492274..494043 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:492274..494043 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01650 vs. NCBI_GenBank
Match: EWM23949.1 (hypothetical protein Naga_100027g35 [Nannochloropsis gaditana])

HSP 1 Score: 772.7 bits (1994), Expect = 8.200e-220
Identity = 402/590 (68.14%), Postives = 467/590 (79.15%), Query Frame = 0 
Query:    1 MPAAGDDDGGALI-LRHASRVGAYVARELANDAGLLVLELGAGLAGVVGLGLCEGALVFKQGVGGGPVVPPQPLRYALWTTLPSMAGRPLPSDAVLRSLLNLPPLSAANASTRSASHEAASTCTSALKVRNIQAGRHVVALATVVGVTLQIGASIQRGRQQYQAQVHEGREPPLAPPQAVRISHRPPACTGTAPAFHVGIVSGAHDRVPSWAGEGRVFGTIPQRWWTRAEWIQDPREWAQLLPSPTVTSFHYSKTAPLFLEAEVAASERPRGLSLELALESLRAGGRASSSSRR---GGMEGVVRILLAGGEVLRGPIRRGVEESGAVDLLVDGEAAVAVAVLAWMEKTPYASAWSALAAQRTREEEAKISARREGNALLWKGYESVNAWVERVPVSRSVERPWRWLAHTWESVGRRLRWLIKGGVTARDALEEYKVVVLVHDADSARLGQRMKMKELLQGAGWDVWGPGTSASRLVRDKDALVPVLVFCQDDATTLERARFLVRAGRPSQLTCALLEDPESACPWLGKGGR---NEGGGDD--RPTVLSIADVHDSLFAFVRARVREGRGIGEIQRELDASTRLCPASS 582
            M  AG D+ G +    H  RVGAY+ RELANDA L+  ELGAG A +VGLG+ EG LV +QG+ GG +   QPLRYALWT LP  AG  LPS AVLR+L+ +P  +    S  S+  E+A+     LKVRN+QAGRHVV LAT++G TLQ+GASIQRGRQ Y+AQV +GREPPLAPP AVRISHRPPA  G APAFHV +++ A D++P W   GRV   +P RWWTRA+WI DPREW  LLPSP + S  Y+   PLFLEAEV+AS RPRGLSL LALESLRAGGRA S   R   GG EGVVR+L+A GE LR P RR VEESGAVDL+VDGEAAVA+A LAWME+TPYASAWSALAAQRTREEEAKISARREG++ +WKG E  NAW ER+PVS +V RPWRWLA TWE++GRR+RWL+KGGVTARDALEEYKVVVLVHDAD+ RL QR+K+KELLQ AGWDVWGPGTSASRLV D+DALVPVLV+CQDDATTLERARFLVRAGRP QLTCAL+EDPESACPWL  GGR   ++ G D   +PT+LS++DVHD +FAF+R RV+EG+ I E+Q ELD ST L P+S+
Sbjct:   17 MTNAGVDEKGVVASFWHTYRVGAYITRELANDASLIAFELGAGFAAIVGLGVYEGTLVSRQGMDGGAIKMSQPLRYALWTALPCAAGHILPSGAVLRNLMKVP--ATTTPSLISSISESAAAGPGMLKVRNLQAGRHVVGLATLIGTTLQVGASIQRGRQFYRAQVLDGREPPLAPPDAVRISHRPPASAGDAPAFHVVLMADAQDKLPWWGEGGRVSRAMPHRWWTRAQWITDPREWMGLLPSPNIASLRYTDMRPLFLEAEVSASSRPRGLSLNLALESLRAGGRAGSRGPRVVGGGEEGVVRVLMASGECLRSPTRRMVEESGAVDLMVDGEAAVALAALAWMEETPYASAWSALAAQRTREEEAKISARREGSS-VWKGLEQWNAWAERLPVSEAVGRPWRWLAGTWETMGRRVRWLLKGGVTARDALEEYKVVVLVHDADAPRLSQRLKLKELLQAAGWDVWGPGTSASRLVGDRDALVPVLVYCQDDATTLERARFLVRAGRPPQLTCALVEDPESACPWLA-GGRPIVDDRGSDTEAKPTILSVSDVHDKIFAFIRGRVKEGKSIAEVQSELDDSTGLMPSST 602
The following BLAST results are available for this feature:
BLAST of NO16G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23949.18.200e-22068.14hypothetical protein Naga_100027g35 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003150NSK003150Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01650.1NO16G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593590gene_6047Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g35gene6505Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01650.1NO16G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01650 ID=NO16G01650|Name=NO16G01650|organism=Nannochloropsis oceanica|type=gene|length=1770bp
ATGCCTGCGGCAGGCGACGACGACGGCGGAGCGCTGATACTGCGGCATGC
ATCACGGGTGGGCGCGTACGTCGCCCGGGAGCTGGCCAACGACGCGGGTC
TGTTGGTGTTAGAGCTTGGCGCGGGCCTGGCAGGGGTGGTCGGCCTAGGC
CTTTGCGAAGGCGCGCTTGTCTTTAAGCAAGGCGTTGGCGGGGGTCCCGT
GGTACCACCTCAACCTTTGCGCTATGCATTGTGGACGACGTTACCAAGTA
TGGCTGGTCGACCACTGCCATCAGACGCCGTGCTTCGAAGTCTACTGAAT
CTGCCTCCTTTGTCGGCTGCCAACGCGTCAACCAGGAGCGCAAGCCACGA
GGCCGCTTCAACATGCACAAGTGCCTTAAAAGTGCGCAACATTCAGGCAG
GCCGGCACGTGGTGGCGCTCGCAACGGTAGTGGGCGTGACGTTGCAAATC
GGAGCAAGCATTCAACGCGGCCGTCAGCAATACCAGGCCCAAGTCCATGA
AGGACGCGAGCCTCCTCTAGCACCACCACAAGCCGTGCGTATCTCACACC
GCCCCCCAGCATGTACTGGTACGGCGCCTGCTTTTCACGTGGGTATCGTG
AGCGGGGCCCACGATAGAGTACCGTCGTGGGCGGGGGAGGGACGGGTGTT
TGGAACAATTCCTCAGCGATGGTGGACTCGAGCAGAGTGGATCCAGGACC
CTCGGGAATGGGCTCAATTACTGCCTTCGCCCACGGTTACCTCCTTTCAT
TATAGCAAGACAGCTCCTTTGTTCTTGGAGGCAGAGGTGGCAGCTTCGGA
GCGACCGAGGGGGCTGTCGTTGGAGTTAGCTTTGGAGAGCTTGAGGGCGG
GAGGGAGGGCAAGCAGCAGCAGCAGAAGGGGTGGGATGGAGGGTGTGGTG
AGAATACTTCTGGCGGGGGGAGAGGTGTTGCGAGGGCCGATACGGAGAGG
GGTGGAGGAGAGTGGGGCCGTGGACTTGCTTGTGGATGGGGAGGCTGCAG
TAGCGGTTGCTGTGCTTGCATGGATGGAAAAAACGCCCTACGCCTCGGCG
TGGTCGGCCTTGGCGGCTCAGAGGACGAGGGAGGAGGAGGCAAAGATAAG
CGCGAGAAGGGAAGGAAATGCATTGTTGTGGAAGGGATACGAGAGTGTGA
ACGCGTGGGTGGAGCGGGTGCCAGTGTCGAGAAGTGTGGAGAGGCCGTGG
CGGTGGTTGGCCCACACGTGGGAGAGTGTCGGAAGGCGACTACGATGGTT
AATCAAGGGGGGTGTGACAGCCAGGGATGCCCTGGAGGAGTATAAGGTTG
TGGTACTCGTGCACGACGCAGATTCGGCAAGACTGGGACAAAGAATGAAA
ATGAAGGAGCTACTGCAGGGGGCGGGATGGGATGTGTGGGGTCCAGGAAC
GTCTGCTTCGAGGTTGGTAAGGGATAAGGATGCCCTTGTGCCTGTATTAG
TATTTTGCCAGGATGATGCAACGACCTTGGAGAGGGCGAGGTTCCTGGTC
CGGGCTGGAAGGCCCTCACAGTTGACGTGTGCGTTGCTGGAGGATCCTGA
GAGTGCTTGTCCGTGGTTGGGGAAGGGAGGGAGGAATGAAGGGGGAGGCG
ATGACCGACCGACTGTGTTGAGTATTGCGGACGTGCATGATAGTTTGTTT
GCCTTTGTGAGAGCGAGGGTGAGGGAAGGCAGAGGAATCGGGGAGATTCA
GAGAGAGTTGGATGCGTCGACGCGCCTGTGTCCGGCTTCGTCTTCGTCAG
CTTCTCCGACTTACAGGTAG
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protein sequence of NO16G01650.1

>NO16G01650.1-protein ID=NO16G01650.1-protein|Name=NO16G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MPAAGDDDGGALILRHASRVGAYVARELANDAGLLVLELGAGLAGVVGLG
LCEGALVFKQGVGGGPVVPPQPLRYALWTTLPSMAGRPLPSDAVLRSLLN
LPPLSAANASTRSASHEAASTCTSALKVRNIQAGRHVVALATVVGVTLQI
GASIQRGRQQYQAQVHEGREPPLAPPQAVRISHRPPACTGTAPAFHVGIV
SGAHDRVPSWAGEGRVFGTIPQRWWTRAEWIQDPREWAQLLPSPTVTSFH
YSKTAPLFLEAEVAASERPRGLSLELALESLRAGGRASSSSRRGGMEGVV
RILLAGGEVLRGPIRRGVEESGAVDLLVDGEAAVAVAVLAWMEKTPYASA
WSALAAQRTREEEAKISARREGNALLWKGYESVNAWVERVPVSRSVERPW
RWLAHTWESVGRRLRWLIKGGVTARDALEEYKVVVLVHDADSARLGQRMK
MKELLQGAGWDVWGPGTSASRLVRDKDALVPVLVFCQDDATTLERARFLV
RAGRPSQLTCALLEDPESACPWLGKGGRNEGGGDDRPTVLSIADVHDSLF
AFVRARVREGRGIGEIQRELDASTRLCPASSSSASPTYR*
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Synonyms
Publications