NO16G01610, NO16G01610 (gene) Nannochloropsis oceanica

Overview
NameNO16G01610
Unique NameNO16G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1189
Alignment locationchr16:485294..486482 -

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Properties
Property NameValue
DescriptionCytochrome c oxidase polypeptide vib
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:485294..486482 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR036549Cyt_c_oxidase_su6B_sf
IPR003213Cyt_c_oxidase_su6B
Homology
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: EWM23976.1 (cytochrome c oxidase polypeptide vib [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 4.700e-39
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0 
Query:    1 MSTLEVSDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQVDDA 85
            MSTLEV+DLPVPAKDERFP++NQALNCWNKYNEWVLCLK NEKDE+KCFLPRFNMRELCP EWVEKWDADR   KFAGLQ DDA
Sbjct:    1 MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDA 84
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BLAST of NO16G01610 vs. NCBI_GenBank
Match: OQR91544.1 (hypothetical protein THRCLA_22451 [Thraustotheca clavata])

HSP 1 Score: 95.5 bits (236), Expect = 8.600e-17
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:    8 DLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQ 81
            DL     D RFPT NQ  +CW +YNEW LCLK N+ DE  C   R   + LCPG W+EKWD +RD   F+G+Q
Sbjct:    6 DLKTTPVDPRFPTQNQTQHCWTRYNEWALCLKKNDDDEDVCKSARSYAKSLCPGSWIEKWDGERDEGNFSGVQ 78
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BLAST of NO16G01610 vs. NCBI_GenBank
Match: XP_008616217.1 (hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] >XP_012198803.1 hypothetical protein SPRG_04489 [Saprolegnia parasitica CBS 223.65] >EQC30364.1 hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] >KDO30588.1 hypothetical protein SPRG_04489 [Saprolegnia parasitica CBS 223.65] >OQR92755.1 hypothetical protein ACHHYP_03234 [Achlya hypogyna])

HSP 1 Score: 94.0 bits (232), Expect = 2.500e-16
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:    8 DLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQ 81
            DL     D RFPT NQ  +CW +YNEW LCLK N+ DE  C   R   + +CPG W+EKWD +RD   F+G+Q
Sbjct:    6 DLKTTPVDPRFPTQNQTQHCWTRYNEWALCLKKNDDDEDACKQTRQYAKAICPGSWMEKWDTERDDGNFSGVQ 78
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: CBN78909.1 (cytochrome c oxidase subunit 6b [Ectocarpus siliculosus])

HSP 1 Score: 93.2 bits (230), Expect = 4.300e-16
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0 
Query:   15 DERFPTINQALNCWNKYNEWVLCLKNNEK---DEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQ 81
            D RFPT+NQA +CWN YNEWVLC K  E+   D  KC+  R N   LCP EW EKWD DRD   +AG++
Sbjct:   14 DSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKKCYRKRHNALALCPDEWTEKWDEDRDEGTYAGIK 82
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: XP_009833035.1 (hypothetical protein H257_08705 [Aphanomyces astaci] >ETV77248.1 hypothetical protein H257_08705 [Aphanomyces astaci])

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-15
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:    7 SDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGL 80
            +DL     D RFPT NQ  +CW +YNEW LCLK N+ DE  C   R   + LCPG W+EKWD +RD   F+G+
Sbjct:    5 ADLKTTPVDPRFPTQNQTQHCWVRYNEWALCLKKNDDDEDACKHKRQYAKSLCPGSWLEKWDTERDEGNFSGV 77
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: XP_008877324.1 (hypothetical protein H310_12132 [Aphanomyces invadans] >ETV94121.1 hypothetical protein H310_12132 [Aphanomyces invadans])

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-15
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:    7 SDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGL 80
            +DL     D RFPT NQ  +CW +YNEW LCLK N+ DE  C   R   + LCPG W+EKWD +RD   F+G+
Sbjct:    5 ADLKTTPVDPRFPTQNQTQHCWVRYNEWALCLKKNDDDEDACKKHRQYAKSLCPGSWLEKWDTERDEGNFSGV 77
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: XP_008894179.1 (hypothetical protein PPTG_03256 [Phytophthora parasitica INRA-310] >ETI41546.1 hypothetical protein F443_13223 [Phytophthora parasitica P1569] >ETK81590.1 hypothetical protein L915_12915 [Phytophthora parasitica] >ETL34996.1 hypothetical protein L916_12824 [Phytophthora parasitica] >ETL88237.1 hypothetical protein L917_12666 [Phytophthora parasitica] >ETM41503.1 hypothetical protein L914_12724 [Phytophthora parasitica] >ETN20202.1 hypothetical protein PPTG_03256 [Phytophthora parasitica INRA-310] >ETO70191.1 hypothetical protein F444_13302 [Phytophthora parasitica P1976] >ETP11293.1 hypothetical protein F441_13174 [Phytophthora parasitica CJ01A1] >ETP32138.1 hypothetical protein F442_19095 [Phytophthora parasitica P10297] >ETP39440.1 hypothetical protein F442_13094 [Phytophthora parasitica P10297] >KUF94924.1 hypothetical protein AM588_10005010 [Phytophthora nicotianae] >KUG01709.1 Cytochrome c oxidase subunit 6b-1 [Phytophthora nicotianae])

HSP 1 Score: 84.0 bits (206), Expect = 2.600e-13
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 0 
Query:    7 SDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQ 81
            S L     D RFP  NQA +CW +YNE+VLCLKNN+ DE  C     N   +CP  WVE+WD  R+   F G+Q
Sbjct:    6 SKLKTTPLDPRFPNQNQAQHCWTRYNEFVLCLKNNDGDEDTCKKYFQNAASICPSSWVERWDEQREEGTFQGVQ 79
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: XP_002901479.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59006.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 84.0 bits (206), Expect = 2.600e-13
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 0 
Query:    5 EVSDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQ 81
            E S L     D RFP  NQA +CW +YNE+VLCLKNN+ DE  C     N   +CP  W+E+WD  R+   F G+Q
Sbjct:    4 EDSKLKTTPLDPRFPNQNQAQHCWTRYNEFVLCLKNNDGDEDTCKKYFQNAASICPSSWMERWDEQREEGSFQGVQ 79
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: GBG34144.1 (Cytochrome c oxidase subunit 6B [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 82.8 bits (203), Expect = 5.800e-13
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:    1 MSTLEVSDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQVDDAE 86
            MS  +VS L    +D RFP  NQ  +CW +YNEW+LCLK   +DE  C   R     LCP E +E WD  R+ + F GL ++D E
Sbjct:    1 MSDADVS-LKTTPRDPRFPNTNQYQHCWTRYNEWILCLKRTGEDEDACKQARKFASSLCPNETMENWDEMRENNNFPGLTLNDDE 84
[Close]
BLAST of NO16G01610 vs. NCBI_GenBank
Match: XP_024574168.1 (protein [Plasmopara halstedii] >CEG37799.1 protein [Plasmopara halstedii])

HSP 1 Score: 81.6 bits (200), Expect = 1.300e-12
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:   15 DERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFLPRFNMRELCPGEWVEKWDADRDGDKFAGLQV 82
            D RFP  NQA +CW +YNE+VLCLKNN+ DE  C     N   LCP  WVE+W+  R+   F G  V
Sbjct:   11 DPRFPNTNQAQHCWTRYNEFVLCLKNNDGDEDACKTYYQNALSLCPNSWVERWNEQREEGTFQGKSV 77
The following BLAST results are available for this feature:
BLAST of NO16G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23976.14.700e-3988.10cytochrome c oxidase polypeptide vib [Nannochlorop... [more]
OQR91544.18.600e-1752.05hypothetical protein THRCLA_22451 [Thraustotheca c... [more]
XP_008616217.12.500e-1650.68hypothetical protein SDRG_11941 [Saprolegnia dicli... [more]
CBN78909.14.300e-1656.52cytochrome c oxidase subunit 6b [Ectocarpus silicu... [more]
XP_009833035.11.200e-1550.68hypothetical protein H257_08705 [Aphanomyces astac... [more]
XP_008877324.11.200e-1550.68hypothetical protein H310_12132 [Aphanomyces invad... [more]
XP_008894179.12.600e-1348.65hypothetical protein PPTG_03256 [Phytophthora para... [more]
XP_002901479.12.600e-1347.37conserved hypothetical protein [Phytophthora infes... [more]
GBG34144.15.800e-1344.71Cytochrome c oxidase subunit 6B [Aurantiochytrium ... [more]
XP_024574168.11.300e-1250.75protein [Plasmopara halstedii] >CEG37799.1 protein... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01610.1NO16G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593578gene_6043Nannochloropsis oceanica (N. oceanica CCMP1779)gene
COX6bgene6501Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01610.1NO16G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01610 ID=NO16G01610|Name=NO16G01610|organism=Nannochloropsis oceanica|type=gene|length=1189bp
CAAAACGCGAGGTCGCCAGAGAGCATCTTATATGCGCTCATGTGTTAGGT
GCATCGCGTCCACCACCCACCTAATAGACACATGCTGGACGGCATCGACG
AGCCCTGCGTGGGCAACACATGTTCCTTGTTGCAAGACGTGCGTGCGCAT
GGCCGCTGGATCAGAGCCAATTGGGTGCATTGGCAGGCAACGCGGGTGTT
TTGGGGCCTGCAAGAAGCGATGGCCTCACTAATGCAACTGCTCCGTCTAT
ACTTTCATACAAACCACACTTAGACCCCTCCTAACTTAGCTATGTCGACG
CTTGAGGTCAGCGACCTGCCTGTGCCCGCCAAGGATGAGCGCTTCCCGAC
CATTAACCAGGCCCTGAACTGCTGgtaagtgtaaatgtggagagccaagg
ggaagagcaggggatttgccttgcgttgggcacgtcatatctgcccagtg
tacttcgtggcagggaaagactcgcccgctttccgcatgtacaaatgctc
tccagttgtctatctcttcttggtgctctcatttattttctctttgcggt
aacagtgccagtgtatgacccatctggactcacacctctccttttctctc
tcacgtccagGAACAAATACAACGAGTGGGTGCTGTGCCTAAAGAACAAC
GAGAAGGATGAGGCCAAATGCTTTTTACCTCGTTTTAATATGCGTGAGCT
TTGTCCAGGGGAGTGGGTGGAGAAATGGGATGCGGATCGCGACGGAGACA
AGTTCGCCGGTCTCCAGGTGGACGATGCTGAGCATTAAGCGTCTCGGGTG
TGGTAGCGCTAGATAGAGAATATTCGTGCGTTATTTCTCAGCTTGGTCCT
TGTATTTCCTATTTAGCGATGGACTGGTGGGGTCGTGATGCATGAGTATT
AGCGACGTGGATGTTTTTTTGTAGGAAGGAAGAAGCGAGGGGAAAGACAT
GGGGCGAGGCTACAAGGACGAGTACAGGGAATATGGGACACTTGCCTCCT
ACTTTCGTCGTACGGCTATGTGTATGGGTTGGTTCTGTTGATATGCCGCG
CTGCATTAGGGTGGGTATCCCTGGGAACGGCTCTTCGTCCGTGCGTTCTT
TGTGTCGCGTTGTCAAGCAGGAAAAAGAAAAGGTACCAAAAAAGGCATTG
ATGAAATGCAAAAACCACCATTCAGCTCGTCATTTGTCG
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protein sequence of NO16G01610.1

>NO16G01610.1-protein ID=NO16G01610.1-protein|Name=NO16G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSTLEVSDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFL
PRFNMRELCPGEWVEKWDADRDGDKFAGLQVDDAEH*
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Synonyms
Publications